RchiOBHm_Chr2g0167711

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000363
Physical Location & Seq
Reverse (-)
82121648 .. 82123377
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53547

Sequence Viewer

Length: 360 bp
ATGGAAGATATAATAGTGGACATTGATTGGGCAGGAGGACGAGCATGTAACAATCCTCGGAACTCAATGATGAGAATCCAGAGCTGCTTCTTTGGCCTTCAATACATAATGGTAAACGCATGTGCAGATCTCAAGGACTTGTCACAGCTCTGTTTTGTTCCAAATCTCCAATTTGTTTTAGTGTTAAGATGCTCTAGAATGGAGACAATAATCAATTTGAGTAAACTGGGTGGAGATGCAAATGTGGCAAAAGAATTTAACCTGTTTGCGAAACTGAAGCGTCTTGATTTGGCATTTCTACCAGCGTTGGAGAGCGTATACAAGACTGCCTTGCCCTTACCATGTCTAAAGCAGCACTGA

Protein Analysis

119

Amino Acids

13.41

Weight (kDa)

8.25

Isoelectric Point (pI)

43.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 25 - 109 8.9e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 318
AcsI RAATTY 1 cut(s) 254
AcuI CTGAAG 1 cut(s) 296
AgsI TTSAA 1 cut(s) 101
AluBI AGCT 2 cut(s) 84, 148
AluI AGCT 2 cut(s) 84, 148
Alw26I GTCTC 1 cut(s) 197
AoxI GGCC 1 cut(s) 94
ApeKI GCWGC 2 cut(s) 84, 352
ApoI RAATTY 1 cut(s) 254
BbvI GCAGC 1 cut(s) 71
BcoDI GTCTC 1 cut(s) 197
BfaI CTAG 1 cut(s) 195
BglII AGATCT 1 cut(s) 127
BisI GCNGC 2 cut(s) 85, 353
BlsI GCNGC 2 cut(s) 86, 354
BmrI ACTGGG 1 cut(s) 236
BmsI GCATC 2 cut(s) 179, 226
BmuI ACTGGG 1 cut(s) 236
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 1 cut(s) 74
BsaJI CCNNGG 1 cut(s) 56
Bse1I ACTGG 1 cut(s) 231
Bse8I GATNNNNATC 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 56
BseJI GATNNNNATC 1 cut(s) 74
BseNI ACTGG 1 cut(s) 231
BseXI GCAGC 1 cut(s) 71
BsgI GTGCAG 1 cut(s) 144
BshFI GGCC 1 cut(s) 96
BsmAI GTCTC 1 cut(s) 197
BsnI GGCC 1 cut(s) 96
Bsp143I GATC 1 cut(s) 127
BspANI GGCC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 231
BssECI CCNNGG 1 cut(s) 56
BssMI GATC 1 cut(s) 127
BssNAI GTATAC 1 cut(s) 319
Bst1107I GTATAC 1 cut(s) 319
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 1 cut(s) 197
BstMBI GATC 1 cut(s) 127
BstMWI GCNNNNNNNGC 2 cut(s) 93, 245
BstNSI RCATGY 2 cut(s) 48, 123
BstV1I GCAGC 1 cut(s) 71
BstX2I RGATCY 1 cut(s) 127
BstYI RGATCY 1 cut(s) 127
BstZ17I GTATAC 1 cut(s) 319
BsuRI GGCC 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 355
CseI GACGC 1 cut(s) 269
CviAII CATG 3 cut(s) 45, 120, 342
CviJI RGCY 3 cut(s) 84, 96, 148
CviKI_1 RGCY 3 cut(s) 84, 96, 148
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
Eco57I CTGAAG 1 cut(s) 296
FaeI CATG 3 cut(s) 48, 123, 345
FaiI YATR 6 cut(s) 11, 46, 107, 121, 319, 343
FalI AAGNNNNNCTT 2 cut(s) 314, 346
FatI CATG 3 cut(s) 44, 119, 341
FblI GTMKAC 1 cut(s) 318
Fnu4HI GCNGC 2 cut(s) 85, 353
Fsp4HI GCNGC 2 cut(s) 85, 353
FspBI CTAG 1 cut(s) 195
GluI GCNGC 2 cut(s) 85, 353
HaeIII GGCC 1 cut(s) 96
HgaI GACGC 1 cut(s) 269
Hin1II CATG 3 cut(s) 48, 123, 345
HinfI GANTC 1 cut(s) 75
Hpy166II GTNNAC 4 cut(s) 19, 115, 224, 319
Hpy188I TCNGA 1 cut(s) 60
Hpy188III TCNNGA 3 cut(s) 79, 195, 284
Hpy8I GTNNAC 4 cut(s) 19, 115, 224, 319
HpyAV CCTTC 1 cut(s) 107
HpyCH4V TGCA 2 cut(s) 125, 239
HpyF10VI GCNNNNNNNGC 2 cut(s) 93, 245
Hsp92II CATG 3 cut(s) 48, 123, 345
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 5 cut(s) 18, 92, 212, 275, 315
Lsp1109I GCAGC 1 cut(s) 71
LweI GCATC 2 cut(s) 179, 226
MaeI CTAG 1 cut(s) 195
MaeIII GTNAC 2 cut(s) 47, 141
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MboII GAAGA 1 cut(s) 17
MflI RGATCY 1 cut(s) 127
MluCI AATT 3 cut(s) 170, 214, 254
MmeI TCCRAC 1 cut(s) 288
MnlI CCTC 2 cut(s) 29, 66
MseI TTAA 2 cut(s) 185, 258
MwoI GCNNNNNNNGC 2 cut(s) 93, 245
NdeII GATC 1 cut(s) 127
NlaIII CATG 3 cut(s) 48, 123, 345
NmuCI GTSAC 1 cut(s) 141
NspI RCATGY 2 cut(s) 48, 123
PfeI GAWTC 1 cut(s) 75
PkrI GCNGC 2 cut(s) 86, 354
PsuI RGATCY 1 cut(s) 127
SaqAI TTAA 2 cut(s) 185, 258
SatI GCNGC 2 cut(s) 85, 353
Sau3AI GATC 1 cut(s) 127
SetI ASST 3 cut(s) 86, 150, 264
SfaNI GCATC 2 cut(s) 179, 226
SmlI CTYRAG 1 cut(s) 131
SmoI CTYRAG 1 cut(s) 131
Sse9I AATT 3 cut(s) 170, 214, 254
SspMI CTAG 1 cut(s) 195
TasI AATT 3 cut(s) 170, 214, 254
TfiI GAWTC 1 cut(s) 75
Tru1I TTAA 2 cut(s) 185, 258
Tru9I TTAA 2 cut(s) 185, 258
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 2 cut(s) 84, 352
Tsp45I GTSAC 1 cut(s) 141
XapI RAATTY 1 cut(s) 254
XbaI TCTAGA 1 cut(s) 194
XceI RCATGY 2 cut(s) 48, 123
XmiI GTMKAC 1 cut(s) 318
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.