Rroxscaffold_2G00116680

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000363
Physical Location & Seq
Reverse (-)
43962003 .. 43966956
4954 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00116680.1

Sequence Viewer

Length: 420 bp
ATGGGAGCTCAAAAGAAGATTAGAGTGGAAATCTTGGACCGATACAAAGCTTTGGACTTGTTTCAAGAGAAAGTTGGAAAAGAAACACACTCTATTCATCCGTATATCCCAAAACTTGCTGAATTTGTGCCAAGAAAGTGTGGGTTTGACGGTTCTCCGTTTGCTACAACATTGTGCTCGTCCGGCTACGCCTCAACGTTTGGGTGGCCTCCAGCCTCCCCACCTTCATGGGGTTGCTGTCGGACGGGAGATCAATATCTACCGCCCATAGGATTTTGTCGAAGGAGTTGTGATCCTGGTTTGGTCAGTTTCGGTTCGGCTTGGCTCGTGGTGGAGGATAATATCATGCTGTTACAAGTCGGTAACCAGTCCCTGCGATGGGTCTCTCGGATCGCCGGCGCCGCCTGGAGTTTCAATTGA

Protein Analysis

139

Amino Acids

15.39

Weight (kDa)

8.81

Isoelectric Point (pI)

55.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 398
AciI CCGC 2 cut(s) 263, 402
AclI AACGTT 1 cut(s) 197
AclWI GGATC 2 cut(s) 287, 398
AcsI RAATTY 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 399
AfiI CCNNNNNNNGG 4 cut(s) 230, 269, 378, 379
AgsI TTSAA 2 cut(s) 65, 415
AjnI CCWGG 2 cut(s) 295, 404
AluBI AGCT 2 cut(s) 8, 50
AluI AGCT 2 cut(s) 8, 50
Alw21I GWGCWC 2 cut(s) 10, 179
Alw26I GTCTC 1 cut(s) 388
AlwI GGATC 2 cut(s) 287, 398
AlwNI CAGNNNCTG 1 cut(s) 373
AoxI GGCC 1 cut(s) 206
ApoI RAATTY 1 cut(s) 122
AspLEI GCGC 1 cut(s) 401
AspS9I GGNCC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 37
BanI GGYRCC 1 cut(s) 398
BanII GRGCYC 1 cut(s) 10
BauI CACGAG 1 cut(s) 326
Bbv12I GWGCWC 2 cut(s) 10, 179
BccI CCATC 1 cut(s) 372
BciT130I CCWGG 2 cut(s) 297, 406
BcoDI GTCTC 1 cut(s) 388
BfoI RGCGCY 1 cut(s) 402
BisI GCNGC 1 cut(s) 402
BlsI GCNGC 1 cut(s) 403
Bme1390I CCNGG 2 cut(s) 297, 406
Bme18I GGWCC 1 cut(s) 37
BmgT120I GGNCC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 400
BmrFI CCNGG 2 cut(s) 297, 406
BpmI CTGGAG 1 cut(s) 195
BsaBI GATNNNNATC 1 cut(s) 255
BsaHI GRCGYC 1 cut(s) 399
BsaI GGTCTC 1 cut(s) 388
Bsc4I CCNNNNNNNGG 4 cut(s) 230, 269, 378, 379
Bse118I RCCGGY 1 cut(s) 395
Bse1I ACTGG 1 cut(s) 367
Bse8I GATNNNNATC 1 cut(s) 255
BseBI CCWGG 2 cut(s) 297, 406
BseGI GGATG 1 cut(s) 97
BseJI GATNNNNATC 1 cut(s) 255
BseLI CCNNNNNNNGG 4 cut(s) 230, 269, 378, 379
BseNI ACTGG 1 cut(s) 367
BshFI GGCC 1 cut(s) 208
BshNI GGYRCC 1 cut(s) 398
BsiHKAI GWGCWC 2 cut(s) 10, 179
BsiSI CCGG 2 cut(s) 183, 396
BslFI GGGAC 1 cut(s) 355
BslI CCNNNNNNNGG 4 cut(s) 230, 269, 378, 379
BsmAI GTCTC 1 cut(s) 388
BsmFI GGGAC 1 cut(s) 355
BsnI GGCC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 388
Bsp1286I GDGCHC 2 cut(s) 10, 179
Bsp143I GATC 3 cut(s) 250, 292, 390
BspACI CCGC 2 cut(s) 263, 402
BspANI GGCC 1 cut(s) 208
BspLI GGNNCC 1 cut(s) 400
BspPI GGATC 2 cut(s) 287, 398
BspT107I GGYRCC 1 cut(s) 398
BspTNI GGTCTC 1 cut(s) 388
BsrFI RCCGGY 1 cut(s) 395
BsrI ACTGG 1 cut(s) 367
BssAI RCCGGY 1 cut(s) 395
BssMI GATC 3 cut(s) 250, 292, 390
BssNI GRCGYC 1 cut(s) 399
BssSI CACGAG 1 cut(s) 326
Bst2BI CACGAG 1 cut(s) 326
Bst2UI CCWGG 2 cut(s) 297, 406
Bst4CI ACNGT 1 cut(s) 152
BstACI GRCGYC 1 cut(s) 399
BstC8I GCNNGC 1 cut(s) 397
BstEII GGTNACC 1 cut(s) 362
BstF5I GGATG 1 cut(s) 97
BstH2I RGCGCY 1 cut(s) 402
BstHHI GCGC 1 cut(s) 401
BstKTI GATC 3 cut(s) 253, 295, 393
BstMAI GTCTC 1 cut(s) 388
BstMBI GATC 3 cut(s) 250, 292, 390
BstMWI GCNNNNNNNGC 2 cut(s) 183, 401
BstNI CCWGG 2 cut(s) 297, 406
BstPI GGTNACC 1 cut(s) 362
BstSCI CCNGG 2 cut(s) 295, 404
BstXI CCANNNNNNTGG 1 cut(s) 228
BsuRI GGCC 1 cut(s) 208
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 97
Cac8I GCNNGC 1 cut(s) 397
CaiI CAGNNNCTG 1 cut(s) 373
CfoI GCGC 1 cut(s) 401
Cfr10I RCCGGY 1 cut(s) 395
Cfr13I GGNCC 1 cut(s) 37
CviAII CATG 2 cut(s) 228, 346
CviJI RGCY 7 cut(s) 8, 50, 186, 208, 215, 320, 325
CviKI_1 RGCY 7 cut(s) 8, 50, 186, 208, 215, 320, 325
DinI GGCGCC 1 cut(s) 400
DpnI GATC 3 cut(s) 252, 294, 392
DpnII GATC 3 cut(s) 250, 292, 390
Ecl136II GAGCTC 1 cut(s) 8
Eco24I GRGCYC 1 cut(s) 10
Eco31I GGTCTC 1 cut(s) 388
Eco47I GGWCC 1 cut(s) 37
Eco53kI GAGCTC 1 cut(s) 8
Eco91I GGTNACC 1 cut(s) 362
EcoICRI GAGCTC 1 cut(s) 8
EcoO65I GGTNACC 1 cut(s) 362
EcoRII CCWGG 2 cut(s) 295, 404
EcoT38I GRGCYC 1 cut(s) 10
EgeI GGCGCC 1 cut(s) 400
EheI GGCGCC 1 cut(s) 400
FaeI CATG 2 cut(s) 231, 349
FaiI YATR 4 cut(s) 105, 229, 269, 347
FaqI GGGAC 1 cut(s) 355
FatI CATG 2 cut(s) 227, 345
Fnu4HI GCNGC 1 cut(s) 402
FokI GGATG 1 cut(s) 84
FriOI GRGCYC 1 cut(s) 10
Fsp4HI GCNGC 1 cut(s) 402
GlaI GCGC 1 cut(s) 400
GluI GCNGC 1 cut(s) 402
GsuI CTGGAG 1 cut(s) 195
HaeII RGCGCY 1 cut(s) 402
HaeIII GGCC 1 cut(s) 208
HapII CCGG 2 cut(s) 183, 396
HhaI GCGC 1 cut(s) 401
Hin1I GRCGYC 1 cut(s) 399
Hin1II CATG 2 cut(s) 231, 349
Hin6I GCGC 1 cut(s) 399
HinP1I GCGC 1 cut(s) 399
HindIII AAGCTT 1 cut(s) 48
HpaII CCGG 2 cut(s) 183, 396
Hpy188I TCNGA 2 cut(s) 243, 390
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 2 cut(s) 234, 276
HpyCH4III ACNGT 1 cut(s) 152
HpyCH4IV ACGT 1 cut(s) 197
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 401
HpySE526I ACGT 1 cut(s) 197
Hsp92I GRCGYC 1 cut(s) 399
Hsp92II CATG 2 cut(s) 231, 349
HspAI GCGC 1 cut(s) 399
KasI GGCGCC 1 cut(s) 398
KroI GCCGGC 1 cut(s) 395
KroNI GCCGGC 1 cut(s) 397
Kzo9I GATC 3 cut(s) 250, 292, 390
LmnI GCTCC 1 cut(s) 5
LpnPI CCDG 8 cut(s) 196, 225, 282, 309, 380, 386, 391, 409
MaeII ACGT 1 cut(s) 197
MaeIII GTNAC 2 cut(s) 351, 362
MalI GATC 3 cut(s) 252, 294, 392
MboI GATC 3 cut(s) 250, 292, 390
MboII GAAGA 1 cut(s) 28
MfeI CAATTG 1 cut(s) 415
MhlI GDGCHC 2 cut(s) 10, 179
MluCI AATT 2 cut(s) 122, 415
Mly113I GGCGCC 1 cut(s) 399
MmeI TCCRAC 2 cut(s) 55, 221
MnlI CCTC 4 cut(s) 202, 219, 226, 328
MreI CGCCGGCG 1 cut(s) 395
MroNI GCCGGC 1 cut(s) 395
MslI CAYNNNNRTG 1 cut(s) 226
MspI CCGG 2 cut(s) 183, 396
MspR9I CCNGG 2 cut(s) 297, 406
MunI CAATTG 1 cut(s) 415
MvaI CCWGG 2 cut(s) 297, 406
MwoI GCNNNNNNNGC 2 cut(s) 183, 401
NaeI GCCGGC 1 cut(s) 397
NarI GGCGCC 1 cut(s) 399
NdeII GATC 3 cut(s) 250, 292, 390
NgoMIV GCCGGC 1 cut(s) 395
NlaIII CATG 2 cut(s) 231, 349
NlaIV GGNNCC 1 cut(s) 400
PdiI GCCGGC 1 cut(s) 397
PkrI GCNGC 1 cut(s) 403
PluTI GGCGCC 1 cut(s) 402
Psp124BI GAGCTC 1 cut(s) 10
Psp1406I AACGTT 1 cut(s) 197
Psp6I CCWGG 2 cut(s) 295, 404
PspEI GGTNACC 1 cut(s) 362
PspGI CCWGG 2 cut(s) 295, 404
PspN4I GGNNCC 1 cut(s) 400
PspPI GGNCC 1 cut(s) 37
PstNI CAGNNNCTG 1 cut(s) 373
RseI CAYNNNNRTG 1 cut(s) 226
SacI GAGCTC 1 cut(s) 10
SatI GCNGC 1 cut(s) 402
Sau3AI GATC 3 cut(s) 250, 292, 390
Sau96I GGNCC 1 cut(s) 37
ScrFI CCNGG 2 cut(s) 297, 406
SduI GDGCHC 2 cut(s) 10, 179
SetI ASST 4 cut(s) 10, 52, 200, 226
SfoI GGCGCC 1 cut(s) 400
SgrAI CRCCGGYG 1 cut(s) 395
SinI GGWCC 1 cut(s) 37
SmiMI CAYNNNNRTG 1 cut(s) 226
Sse9I AATT 2 cut(s) 122, 415
SsiI CCGC 2 cut(s) 263, 402
SspDI GGCGCC 1 cut(s) 398
SstI GAGCTC 1 cut(s) 10
StyD4I CCNGG 2 cut(s) 295, 404
TaaI ACNGT 1 cut(s) 152
TaiI ACGT 1 cut(s) 200
TaqI TCGA 1 cut(s) 280
TaqII GACCGA 1 cut(s) 54
TasI AATT 2 cut(s) 122, 415
TauI GCSGC 1 cut(s) 404
TspDTI ATGAA 2 cut(s) 86, 216
TspGWI ACGGA 2 cut(s) 90, 147
VpaK11BI GGWCC 1 cut(s) 37
XapI RAATTY 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.