MD17G1205000.v1.1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0000363
Physical Location & Seq
Reverse (-)
24799553 .. 24800998
1446 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1205000.v1.1.491

Sequence Viewer

Length: 1152 bp
ATGTTGGTGGAAGTGGATTCCTTGAAAAGCAAGGGAAGCTTTGAAGAGGTGGCAACAGAAAGCTTACCGGTAGGTGTAGTCCATGAAATGCCTACTGAACCAACAGTGGGGATGGGGTCAATGTTTGATCAGGTCTGGAGATATGTTGAAGATGAACAGGTGGGAGCAATTGGATTATATGGAATGGGAGGGGTGGGCAAGACCACCCTCCTTACCAAAATCCATTACAAGTTCGCCTTTAGTACTTCTTACCATTTTGATCTTGTGATTTGGATCGTGGTCTCAAAAGACCACAAACTTCAAGAGAAGGTGGGCAAAGAAGCTCTTCAAAGTCATCCAGATATCCCCAAACTTGCGCAAGTCGTGGCGAATGAGTGTGACGGTTTGCCACTTGCATTGATTACAGTTGGTCGAGCCATGACGTGCAAGAAAACACCCCACGAATGGAATCATGCAATTCGAGTTCTAAAGGAATCTGCCTCAGAGTTTTCCGTTATGGGAGGCAAGGTATTTCCTCCTTTAAAATTTAGTCACGATAATCTACCCAGTGAGACAATCAAATCATGCTTCTTATATTGTGCTCTATTTCCGGAAGATTTCCTGATAAAAGGAAATTTTGTAAAAATGCATGACTTAATTCATGACATGGCATTGTGGTTAGCTTGTGACTGCGGGAAAGAAAATGAGAGTGTCCTCGTGCATACAGGTCTCCAGGGAACACCGCATGTGAAGAAATGGAATAACACTAGAAGGGTATCATTGGTTGGTAGTCATTTTAAAAGCCTAGTTGAAACACCAAAATCTCCAAATCTGTTGACCTTATTTCTTAGAGGTGGAGAAGGTCCTTTGAATATGATTGCTGATGGCTTTTCCGATCATATGCCTACTCTGCGAGTTTTGGATTTGTCTAAAAATCTGAACATAACCAAATTGCCGTCTGGCGTTTCCAACCTGATTTCGTTACAACATCTAAATTTGTCAAGAGCTGGTGTAAGAGCGCTGCAGATTGAATTAAAGGCTTGTGTGAGGCTAAAATATTTGAATTTGGAGCATATGGATGAGCTTCATTTTGTTCCACAAAATGTAATATCAAGTTTTCCAATGCTAAAAGTTCCGAGGATGTTAGTAAAGAAGCTAAAGTTTAGACATTAA

Protein Analysis

384

Amino Acids

42.83

Weight (kDa)

8.55

Isoelectric Point (pI)

40.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 41 - 103 3.4e-13 NB-ARC domain
LRR_8 PF13855 270 - 328 9.4e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 357
AccIII TCCGGA 1 cut(s) 589
AciI CCGC 2 cut(s) 672, 722
AclWI GGATC 1 cut(s) 281
AcsI RAATTY 4 cut(s) 524, 613, 973, 1042
AfaI GTAC 1 cut(s) 244
AfeI AGCGCT 1 cut(s) 999
AfiI CCNNNNNNNGG 2 cut(s) 107, 444
AgeI ACCGGT 1 cut(s) 67
AgsI TTSAA 9 cut(s) 25, 44, 149, 302, 329, 791, 850, 1010, 1042
AjiI CACGTC 1 cut(s) 423
AjnI CCWGG 1 cut(s) 711
AluBI AGCT 7 cut(s) 39, 63, 323, 662, 986, 1063, 1135
AluI AGCT 7 cut(s) 39, 63, 323, 662, 986, 1063, 1135
Alw21I GWGCWC 1 cut(s) 583
Alw26I GTCTC 3 cut(s) 286, 545, 713
AlwI GGATC 1 cut(s) 281
Aor13HI TCCGGA 1 cut(s) 589
Aor51HI AGCGCT 1 cut(s) 999
ApeKI GCWGC 1 cut(s) 1000
ApoI RAATTY 4 cut(s) 524, 613, 973, 1042
AsiGI ACCGGT 1 cut(s) 67
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 2 cut(s) 358, 1000
AspS9I GGNCC 1 cut(s) 842
AvaII GGWCC 1 cut(s) 842
BauI CACGAG 1 cut(s) 695
Bbv12I GWGCWC 1 cut(s) 583
BbvI GCAGC 1 cut(s) 987
BccI CCATC 2 cut(s) 106, 857
BceAI ACGGC 1 cut(s) 919
BciT130I CCWGG 1 cut(s) 713
BclI TGATCA 1 cut(s) 127
BcoDI GTCTC 3 cut(s) 286, 545, 713
BfaI CTAG 2 cut(s) 747, 785
BfmI CTRYAG 1 cut(s) 1001
BfoI RGCGCY 1 cut(s) 1001
BisI GCNGC 1 cut(s) 1001
BlsI GCNGC 1 cut(s) 1002
BmcAI AGTACT 1 cut(s) 244
Bme1390I CCNGG 1 cut(s) 713
Bme18I GGWCC 1 cut(s) 842
BmgBI CACGTC 1 cut(s) 423
BmgT120I GGNCC 1 cut(s) 842
BmrFI CCNGG 1 cut(s) 713
BmrI ACTGGG 1 cut(s) 540
BmuI ACTGGG 1 cut(s) 540
BpmI CTGGAG 2 cut(s) 157, 695
BsaBI GATNNNNATC 1 cut(s) 272
BsaI GGTCTC 2 cut(s) 286, 713
BsaJI CCNNGG 2 cut(s) 712, 1115
BsaWI WCCGGW 2 cut(s) 67, 589
BsaXI ACNNNNNCTCC 2 cut(s) 492, 522
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 444
Bse118I RCCGGY 1 cut(s) 67
Bse1I ACTGG 1 cut(s) 546
Bse8I GATNNNNATC 1 cut(s) 272
BseAI TCCGGA 1 cut(s) 589
BseBI CCWGG 1 cut(s) 713
BseDI CCNNGG 2 cut(s) 712, 1115
BseGI GGATG 4 cut(s) 117, 334, 1063, 1125
BseJI GATNNNNATC 1 cut(s) 272
BseLI CCNNNNNNNGG 2 cut(s) 107, 444
BseMII CTCAG 1 cut(s) 495
BseNI ACTGG 1 cut(s) 546
BseXI GCAGC 1 cut(s) 987
BshTI ACCGGT 1 cut(s) 67
BsiHKAI GWGCWC 1 cut(s) 583
BsiSI CCGG 2 cut(s) 68, 590
BslI CCNNNNNNNGG 2 cut(s) 107, 444
BsmAI GTCTC 3 cut(s) 286, 545, 713
Bso31I GGTCTC 2 cut(s) 286, 713
Bsp1286I GDGCHC 1 cut(s) 583
Bsp13I TCCGGA 1 cut(s) 589
Bsp143I GATC 4 cut(s) 127, 259, 273, 874
BspACI CCGC 2 cut(s) 672, 722
BspCNI CTCAG 1 cut(s) 494
BspEI TCCGGA 1 cut(s) 589
BspHI TCATGA 1 cut(s) 640
BspMAI CTGCAG 1 cut(s) 1005
BspPI GGATC 1 cut(s) 281
BspQI GCTCTTC 1 cut(s) 330
BspTNI GGTCTC 2 cut(s) 286, 713
BsrFI RCCGGY 1 cut(s) 67
BsrI ACTGG 1 cut(s) 546
BssAI RCCGGY 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 712, 1115
BssMI GATC 4 cut(s) 127, 259, 273, 874
BssSI CACGAG 1 cut(s) 695
Bst2BI CACGAG 1 cut(s) 695
Bst2UI CCWGG 1 cut(s) 713
Bst4CI ACNGT 3 cut(s) 106, 383, 406
Bst6I CTCTTC 2 cut(s) 39, 330
BstDEI CTNAG 2 cut(s) 481, 827
BstF5I GGATG 4 cut(s) 117, 334, 1063, 1125
BstH2I RGCGCY 1 cut(s) 1001
BstHHI GCGC 2 cut(s) 358, 1000
BstKTI GATC 4 cut(s) 130, 262, 276, 877
BstMAI GTCTC 3 cut(s) 286, 545, 713
BstMBI GATC 4 cut(s) 127, 259, 273, 874
BstMWI GCNNNNNNNGC 2 cut(s) 36, 889
BstNI CCWGG 1 cut(s) 713
BstNSI RCATGY 1 cut(s) 728
BstSCI CCNGG 1 cut(s) 711
BstSFI CTRYAG 1 cut(s) 1001
BstV1I GCAGC 1 cut(s) 987
BtrI CACGTC 1 cut(s) 423
BtsCI GGATG 4 cut(s) 117, 334, 1063, 1125
BtsIMutI CAGTG 2 cut(s) 111, 553
CciI TCATGA 1 cut(s) 640
CfoI GCGC 2 cut(s) 358, 1000
Cfr10I RCCGGY 1 cut(s) 67
Cfr13I GGNCC 1 cut(s) 842
Csp6I GTAC 1 cut(s) 243
CspAI ACCGGT 1 cut(s) 67
CspCI CAANNNNNGTGG 2 cut(s) 378, 413
CviAII CATG 8 cut(s) 83, 418, 452, 564, 629, 641, 646, 725
CviQI GTAC 1 cut(s) 243
DdeI CTNAG 2 cut(s) 481, 827
DpnI GATC 4 cut(s) 129, 261, 275, 876
DpnII GATC 4 cut(s) 127, 259, 273, 874
DraI TTTAAA 2 cut(s) 522, 778
Eam1104I CTCTTC 2 cut(s) 39, 330
EarI CTCTTC 2 cut(s) 39, 330
Eco31I GGTCTC 2 cut(s) 286, 713
Eco32I GATATC 1 cut(s) 343
Eco47I GGWCC 1 cut(s) 842
Eco47III AGCGCT 1 cut(s) 999
EcoO109I RGGNCCY 1 cut(s) 842
EcoRII CCWGG 1 cut(s) 711
EcoRV GATATC 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 630
FaeI CATG 8 cut(s) 86, 421, 455, 567, 632, 644, 649, 728
FalI AAGNNNNNCTT 6 cut(s) 23, 55, 221, 253, 309, 341
FatI CATG 8 cut(s) 82, 417, 451, 563, 628, 640, 645, 724
FauI CCCGC 1 cut(s) 665
FauNDI CATATG 2 cut(s) 879, 1053
FbaI TGATCA 1 cut(s) 127
Fnu4HI GCNGC 1 cut(s) 1001
FokI GGATG 4 cut(s) 124, 321, 1070, 1132
Fsp4HI GCNGC 1 cut(s) 1001
FspBI CTAG 2 cut(s) 747, 785
FspI TGCGCA 1 cut(s) 357
GlaI GCGC 2 cut(s) 357, 999
GluI GCNGC 1 cut(s) 1001
GsuI CTGGAG 2 cut(s) 157, 695
HaeII RGCGCY 1 cut(s) 1001
HapII CCGG 2 cut(s) 68, 590
HhaI GCGC 2 cut(s) 358, 1000
Hin1II CATG 8 cut(s) 86, 421, 455, 567, 632, 644, 649, 728
Hin6I GCGC 2 cut(s) 356, 998
HinP1I GCGC 2 cut(s) 356, 998
HincII GTYRAC 1 cut(s) 816
HindII GTYRAC 1 cut(s) 816
HindIII AAGCTT 2 cut(s) 37, 61
HinfI GANTC 3 cut(s) 17, 448, 473
HpaII CCGG 2 cut(s) 68, 590
Hpy166II GTNNAC 1 cut(s) 816
Hpy188I TCNGA 4 cut(s) 484, 874, 918, 1116
Hpy188III TCNNGA 8 cut(s) 136, 302, 338, 533, 590, 601, 641, 981
Hpy8I GTNNAC 1 cut(s) 816
HpyAV CCTTC 3 cut(s) 301, 744, 833
HpyCH4III ACNGT 3 cut(s) 106, 383, 406
HpyCH4IV ACGT 1 cut(s) 422
HpyCH4V TGCA 6 cut(s) 395, 426, 455, 628, 700, 1003
HpyF10VI GCNNNNNNNGC 2 cut(s) 36, 889
HpyF3I CTNAG 2 cut(s) 481, 827
HpySE526I ACGT 1 cut(s) 422
Hsp92II CATG 8 cut(s) 86, 421, 455, 567, 632, 644, 649, 728
HspAI GCGC 2 cut(s) 356, 998
Kpn2I TCCGGA 1 cut(s) 589
Ksp22I TGATCA 1 cut(s) 127
Kzo9I GATC 4 cut(s) 127, 259, 273, 874
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 164, 1048
Lsp1109I GCAGC 1 cut(s) 987
MaeI CTAG 2 cut(s) 747, 785
MaeII ACGT 1 cut(s) 422
MaeIII GTNAC 4 cut(s) 377, 530, 665, 960
MalI GATC 4 cut(s) 129, 261, 275, 876
MboI GATC 4 cut(s) 127, 259, 273, 874
MboII GAAGA 5 cut(s) 56, 161, 317, 605, 742
MfeI CAATTG 1 cut(s) 168
MhlI GDGCHC 1 cut(s) 583
MluCI AATT 9 cut(s) 168, 456, 524, 613, 636, 929, 973, 1010, 1042
MmeI TCCRAC 1 cut(s) 972
Mph1103I ATGCAT 1 cut(s) 630
MroI TCCGGA 1 cut(s) 589
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 5 cut(s) 521, 635, 777, 1013, 1150
MslI CAYNNNNRTG 1 cut(s) 1056
MspI CCGG 2 cut(s) 68, 590
MspR9I CCNGG 1 cut(s) 713
MunI CAATTG 1 cut(s) 168
MvaI CCWGG 1 cut(s) 713
MwoI GCNNNNNNNGC 2 cut(s) 36, 889
NdeI CATATG 2 cut(s) 879, 1053
NdeII GATC 4 cut(s) 127, 259, 273, 874
NlaIII CATG 8 cut(s) 86, 421, 455, 567, 632, 644, 649, 728
NmuCI GTSAC 3 cut(s) 377, 530, 665
NsbI TGCGCA 1 cut(s) 357
NsiI ATGCAT 1 cut(s) 630
NspI RCATGY 1 cut(s) 728
PagI TCATGA 1 cut(s) 640
PciSI GCTCTTC 1 cut(s) 330
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 3 cut(s) 17, 448, 473
PinAI ACCGGT 1 cut(s) 67
PkrI GCNGC 1 cut(s) 1002
PpuMI RGGWCCY 1 cut(s) 842
Psp5II RGGWCCY 1 cut(s) 842
Psp6I CCWGG 1 cut(s) 711
PspGI CCWGG 1 cut(s) 711
PspPI GGNCC 1 cut(s) 842
PspPPI RGGWCCY 1 cut(s) 842
PstI CTGCAG 1 cut(s) 1005
RsaI GTAC 1 cut(s) 244
RsaNI GTAC 1 cut(s) 243
RseI CAYNNNNRTG 1 cut(s) 1056
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 5 cut(s) 521, 635, 777, 1013, 1150
SatI GCNGC 1 cut(s) 1001
Sau3AI GATC 4 cut(s) 127, 259, 273, 874
Sau96I GGNCC 1 cut(s) 842
ScaI AGTACT 1 cut(s) 244
ScrFI CCNGG 1 cut(s) 713
SduI GDGCHC 1 cut(s) 583
SfcI CTRYAG 1 cut(s) 1001
SinI GGWCC 1 cut(s) 842
SmiMI CAYNNNNRTG 1 cut(s) 1056
Sse9I AATT 9 cut(s) 168, 456, 524, 613, 636, 929, 973, 1010, 1042
SsiI CCGC 2 cut(s) 672, 722
SspI AATATT 1 cut(s) 1037
SspMI CTAG 2 cut(s) 747, 785
StyD4I CCNGG 1 cut(s) 711
TaaI ACNGT 3 cut(s) 106, 383, 406
TaiI ACGT 1 cut(s) 425
TaqI TCGA 2 cut(s) 412, 460
TasI AATT 9 cut(s) 168, 456, 524, 613, 636, 929, 973, 1010, 1042
TatI WGTACW 1 cut(s) 242
TfiI GAWTC 3 cut(s) 17, 448, 473
Tru1I TTAA 5 cut(s) 521, 635, 777, 1013, 1150
Tru9I TTAA 5 cut(s) 521, 635, 777, 1013, 1150
TscAI CASTG 2 cut(s) 111, 553
TseFI GTSAC 3 cut(s) 377, 530, 665
TseI GCWGC 1 cut(s) 1000
Tsp45I GTSAC 3 cut(s) 377, 530, 665
TspDTI ATGAA 4 cut(s) 99, 168, 629, 1055
TspGWI ACGGA 1 cut(s) 481
TspRI CASTG 2 cut(s) 111, 553
VpaK11BI GGWCC 1 cut(s) 842
XapI RAATTY 4 cut(s) 524, 613, 973, 1042
XceI RCATGY 1 cut(s) 728
XmnI GAANNNNTTC 1 cut(s) 324
XspI CTAG 2 cut(s) 747, 785
ZrmI AGTACT 1 cut(s) 244
Zsp2I ATGCAT 1 cut(s) 630
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.