Rmu_sc0002782.1_g000001

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002782.1
OG0000363
Physical Location & Seq
Reverse (-)
2 .. 501
500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002782.1_g000001.1.cds

Sequence Viewer

Length: 500 bp
atggctggcatcttgtcaatcaatttgtcgtccgatgccttcgtttatcgctgctgggattccctcgttggaagacaacattatgtcagcaagctccagaaaaaccttgtaggtttgactacgtctttagaagaactgaagtgtttaaagaatgatgtaaagagaaaggttgaggtttctgagcagcagccacacatgaagcggctagaacaggtacagatctggattgtgaaggtggaaactatggagactcaagtccacgaagttctcaatgctagaattcaagaaactgagaaactgtgctgtggaggttgctgttcaaagaactatatttccagctacaggtatgggaaaaaagtggtcaagaagttgctagaaatcactgctttaaaggaggccggagtttttcaagaggtagccgagaggttacctgcgcccttagtcagtcaaagacctattgagccaattgtgggcatggaatccatgtttgataaggtttg

Protein Analysis

166

Amino Acids

18.93

Weight (kDa)

8.7

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 439
AciI CCGC 1 cut(s) 202
AcsI RAATTY 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 1 cut(s) 216
AfiI CCNNNNNNNGG 2 cut(s) 342, 470
AgsI TTSAA 3 cut(s) 284, 321, 410
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 2 cut(s) 94, 339
AluI AGCT 2 cut(s) 94, 339
Alw26I GTCTC 1 cut(s) 242
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 3 cut(s) 51, 184, 187
ApoI RAATTY 1 cut(s) 279
AspLEI GCGC 1 cut(s) 436
BbsI GAAGAC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 38, 196, 199
BcoDI GTCTC 1 cut(s) 242
BfaI CTAG 3 cut(s) 206, 276, 374
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 1 cut(s) 439
BglII AGATCT 1 cut(s) 219
BisI GCNGC 4 cut(s) 52, 185, 188, 203
BlsI GCNGC 4 cut(s) 53, 186, 189, 204
BmsI GCATC 2 cut(s) 18, 25
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 1 cut(s) 79
BpmI CTGGAG 1 cut(s) 80
BpuEI CTTGAG 1 cut(s) 237
Bsc4I CCNNNNNNNGG 2 cut(s) 342, 470
BseLI CCNNNNNNNGG 2 cut(s) 342, 470
BseMII CTCAG 2 cut(s) 171, 282
BseXI GCAGC 3 cut(s) 38, 196, 199
BseYI CCCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 398
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 2 cut(s) 342, 470
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 398
Bsp143I GATC 1 cut(s) 219
BspACI CCGC 1 cut(s) 202
BspANI GGCC 1 cut(s) 398
BspCNI CTCAG 2 cut(s) 172, 283
BspMI ACCTGC 1 cut(s) 439
BssMI GATC 1 cut(s) 219
Bst4CI ACNGT 1 cut(s) 300
BstC8I GCNNGC 2 cut(s) 7, 92
BstDEI CTNAG 3 cut(s) 180, 291, 439
BstEII GGTNACC 1 cut(s) 426
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 222
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 219
BstPAI GACNNNNGTC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 340
BstV1I GCAGC 3 cut(s) 38, 196, 199
BstV2I GAAGAC 1 cut(s) 79
BstX2I RGATCY 1 cut(s) 219
BstYI RGATCY 1 cut(s) 219
BsuRI GGCC 1 cut(s) 398
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 1 cut(s) 439
Cac8I GCNNGC 2 cut(s) 7, 92
CfoI GCGC 1 cut(s) 436
Csp6I GTAC 1 cut(s) 215
CviAII CATG 3 cut(s) 196, 475, 484
CviJI RGCY 8 cut(s) 5, 94, 190, 205, 339, 398, 419, 463
CviKI_1 RGCY 8 cut(s) 5, 94, 190, 205, 339, 398, 419, 463
CviQI GTAC 1 cut(s) 215
DdeI CTNAG 3 cut(s) 180, 291, 439
DpnI GATC 1 cut(s) 221
DpnII GATC 1 cut(s) 219
DraI TTTAAA 2 cut(s) 147, 390
Eco57I CTGAAG 1 cut(s) 158
Eco91I GGTNACC 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 426
EcoRI GAATTC 1 cut(s) 279
FaeI CATG 3 cut(s) 199, 478, 487
FaiI YATR 7 cut(s) 84, 197, 245, 330, 348, 476, 485
FatI CATG 3 cut(s) 195, 474, 483
Fnu4HI GCNGC 4 cut(s) 52, 185, 188, 203
Fsp4HI GCNGC 4 cut(s) 52, 185, 188, 203
FspBI CTAG 3 cut(s) 206, 276, 374
GlaI GCGC 1 cut(s) 435
GluI GCNGC 4 cut(s) 52, 185, 188, 203
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 1 cut(s) 80
HaeIII GGCC 1 cut(s) 398
HapII CCGG 1 cut(s) 399
HhaI GCGC 1 cut(s) 436
Hin1II CATG 3 cut(s) 199, 478, 487
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 3 cut(s) 59, 250, 479
HpaII CCGG 1 cut(s) 399
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 2 cut(s) 34, 181
Hpy188III TCNNGA 5 cut(s) 97, 223, 284, 364, 410
Hpy8I GTNNAC 1 cut(s) 259
HpyAV CCTTC 2 cut(s) 49, 226
HpyCH4III ACNGT 1 cut(s) 300
HpyCH4IV ACGT 1 cut(s) 122
HpyF3I CTNAG 3 cut(s) 180, 291, 439
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 3 cut(s) 199, 478, 487
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 1 cut(s) 219
LmnI GCTCC 1 cut(s) 99
LpnPI CCDG 8 cut(s) 40, 110, 197, 208, 328, 349, 412, 444
Lsp1109I GCAGC 3 cut(s) 38, 196, 199
LweI GCATC 2 cut(s) 18, 25
MaeI CTAG 3 cut(s) 206, 276, 374
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 426
MalI GATC 1 cut(s) 221
MboI GATC 1 cut(s) 219
MboII GAAGA 2 cut(s) 84, 143
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 1 cut(s) 219
MluCI AATT 3 cut(s) 22, 279, 465
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 74, 166, 302, 388, 406, 417
MseI TTAA 2 cut(s) 146, 389
MspI CCGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 465
NdeII GATC 1 cut(s) 219
NlaIII CATG 3 cut(s) 199, 478, 487
NmeAIII GCCGAG 1 cut(s) 445
PfeI GAWTC 2 cut(s) 59, 479
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 4 cut(s) 53, 186, 189, 204
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshAI GACNNNNGTC 1 cut(s) 254
PspEI GGTNACC 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 54
PsuI RGATCY 1 cut(s) 219
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 1 cut(s) 216
RsaNI GTAC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 146, 389
SatI GCNGC 4 cut(s) 52, 185, 188, 203
Sau3AI GATC 1 cut(s) 219
SchI GAGTC 1 cut(s) 244
SfaNI GCATC 2 cut(s) 18, 25
SfcI CTRYAG 1 cut(s) 340
SmlI CTYRAG 1 cut(s) 252
SmoI CTYRAG 1 cut(s) 252
Sse9I AATT 3 cut(s) 22, 279, 465
SsiI CCGC 1 cut(s) 202
SspMI CTAG 3 cut(s) 206, 276, 374
TaaI ACNGT 1 cut(s) 300
TaiI ACGT 1 cut(s) 125
TasI AATT 3 cut(s) 22, 279, 465
TauI GCSGC 1 cut(s) 205
TfiI GAWTC 2 cut(s) 59, 479
Tru1I TTAA 2 cut(s) 146, 389
Tru9I TTAA 2 cut(s) 146, 389
TscAI CASTG 1 cut(s) 388
TseI GCWGC 3 cut(s) 51, 184, 187
TspDTI ATGAA 1 cut(s) 212
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 121
XapI RAATTY 1 cut(s) 279
XspI CTAG 3 cut(s) 206, 276, 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.