RchiOBHm_Chr4g0407611

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000363
Physical Location & Seq
Forward (+)
29917834 .. 29921216
3383 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ37884

Sequence Viewer

Length: 2688 bp
ATGGGTAACATCTTCTCAGTTAATTTGACTTGCGATACCCTATTTTCTCGCTGCTGGGATTCCATAGCTAAACAAGAACAACTCTGCATAAGTCTTGAAGAAAACCGTGAAACTCTGCAAACTTCCTTGGATGATTTGTTGGCTTTAAGGAATGATGTGAAGCAAAGGGTTGATGATGCTGAGAAGCTGCCGCAAATGAAGCAGACAGAGCAGGTACAACGCTGGATCTCAAAAGTGGAAACTGTAGAGACTGCAGCTAATGCAGTTTTAGCCAGTAGCATTCAACAAGTCGAGAATGGAGGCTGCTGTTCTAATAACTACTTATCCAGTTACAAGTACGGAAAAAGAGTGACTAAATTATTGAGAAAAGTCACTAAATTACAGAGCGAGGGAGTTTTCAAAGAGGTGGCAGCACATAAACTACCAGCAGCTCTGGACAGTGAAAAACCTATGGAGCCAACAGTGGGCATGGAATCGTTGTTTGATGAGGTTTGGGGCCACATTGAAGATGAAGATGTTGGAGTAATTGGCTTATATGGTATGGGAGGGGTCGGCAAGACCACTCTCCTCACCAAAATCTATAACAACTTCCTTCACACTCTTAATAATTTCCATTATGTGATCTGGGTGGTGGTCTCCAAGGACACCACAATTGATATCGTTCAAAATAAGATTGGTGAACAGATTGGGTACTCAACTGACGCATGGAAGCATAAAGAGCAGCATCAAAAAGCTGAAGACATCTTCAGAGTCTTGAGTAGAAAGCAGTTTGTTTTACTATTGGATGATATATGGAAGCCGGTTGAAATAACCAGAGTAGGGGTTCCTATTCCTAACAAGCAGAACAAATCAAAAATGGTCTTCACAACTCGTTCTGAAACTGTTTGTTGTCATATGGATGCCCAAAAAAGGATAAGGTTTATGTGTTTGTCACGGGAAAAAGCATGGGTTTTGTTTCGGGAGAAGGTTGGGGAAGAAGCTCTTTCAATTCATCGAGATATCCCGGAACTTGCAAAAGCTGTTGCAAATGAGTGTGGTGGTTTGCCACTAGCATTAATTACAGTTGGCCGATCCATGGCTTGCAAGAAGACACCCCAAGAATGGAGTCATGCAGTTCATGTTTTGAAGAACTCTGCTGCAGAATTTTCAGGTATGGGAGATAAGGTGCTTCCTCTTCTGAAATTTAGTTATGATAATTTAACCAGTGAGAAAATCAAATTCTGCTTCTTATATTGTACTCTATTTCCGGAAGATTTTCCCATATATAAAGAGGACTTATTATATGGTTGGATGGGTGAAGGGTTATTAGATGGTTATAGCAGTATAGATCAAGCACAAAACGAGAGCTACGATATTATAGGCACTCTAGTTAATTTATGTTTGTTGGAAGCTGATGGAGCTTGTGTAAAAATGCATGATGTGATTCGTGATATGGCATTGTGGCTGGCCTGTGACGTTGAAAAAATAAACCAGAGGTTTGTTCTGCATGCAAGTCTCAAATTGAGTGAAGCAATACCAGATACCATCACAAAATGGAGCGGAAAAAGAATGTCATTGATGTGCAGTGGTATTGTTTGGCTAGATGCTGCACCAAAATGTCCCAATCTGCTCACCTTGTTTCTTGGAAGAAATAATCTGAAGTCTATTGTGCGCGGATTCTTTGATCAGATGCCAGCCCTCCGAGTATTAGATTTGTCTGGAAATCCAAATCTAGCAGAATTGCCGTCAGGAGTTCAATATCTGGTTTCATTACAACATCTCAATTTGTCAGGAACTCGTATTAGAGCCATTCCGGAGGATCTCAAGACCTTGGTGAAGCTAAAATATTTGAATTTGGAACATATGTTAGAGCTTGATTATCTACCTCAATATATCATATATTTTCCGGTGCTTAGAGTTTTGAGGATGCTCAATTCAGGTTCTGTTGACCGAATTCTTTTCTGTGGTGATAAGAAAGCCATGGTAGCAAATCTCTGCATTTTGGAACGCCTTTACGTCTTTACTTTGAGCACAGAAAGTACCTCTTGTTTCCAAACCTTGTTCAATAGTGACAGTTTGTTGACATGCACTCAGTCTCTGCACATCAATGACGGCAACAACCAATTGAGCTCTCTTGATATTACAAATTTGGGGAACAGGAAAAATCTTCATTCTCTTTGCATTTCCAATTATCCTAAATTGGAACAACTGGAGATTAATTGGGCAGGCGCAGCAGCTAGTACAATGAACTCAAGGGTCAGAAACCAGACTCGCTTCCTTGGCCTTCAAGTTGTTTCTGTATCAAAATGCACGGATCTCAAGGACTTGACATGGCTCATTTTTGCTCCACGTCTCATCCATGTAAATGTGACTGTCTGCTACAAAATGGAGAAGGTGATTGATTTGGAAAAACTGGGTGGAGTGGCCAATGCGCTAGATGAGTTGAACCCATTTGCAGAGCTTACATTTCTGAATTTGAAGCATCTTCCAGCGTTGAAAAGCATATATGAAAATGCCTTGCCATTTCCATGTCTAAAGGAAGTCAAGATAGCTTCATGTCCTGCATTGAAGAGGCTGCCACTCAACTCTAGCAGTGCCCGAGGATGTAATCTTGTTATTGAAGGAGGAGAAGAATGGTGGAATGCCTTGGAGTGGGGGGATGAACTTGCTCCAAATGTTTTCCTTCCCAGCTTCAGAACCCGTAACTGA

Protein Analysis

895

Amino Acids

100.94

Weight (kDa)

6.55

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 158 - 327 3e-48 NB-ARC domain
WHD_DRP PF23559 414 - 479 6.9e-07 Disease resistance protein Winged helix domain
LRR_8 PF13855 532 - 569 1.3e-07 Leucine rich repeat
LRR_14 PF23598 555 - 785 1.6e-11 Leucine-rich repeat region
LRR_RPS2 PF23247 748 - 852 3.5e-08 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 202
AccBSI CCGCTC 1 cut(s) 1539
AccII CGCG 1 cut(s) 1653
AccIII TCCGGA 2 cut(s) 1246, 1792
AciI CCGC 3 cut(s) 191, 1539, 1653
AclWI GGATC 4 cut(s) 233, 1065, 1806, 2301
AcoI YGGCCR 2 cut(s) 1066, 2403
AcsI RAATTY 7 cut(s) 1142, 1181, 1217, 1831, 1932, 2125, 2452
AcuI CTGAAG 4 cut(s) 730, 756, 1658, 2656
AfaI GTAC 6 cut(s) 216, 338, 692, 1237, 2020, 2221
AfiI CCNNNNNNNGG 6 cut(s) 464, 819, 909, 1075, 1101, 2631
AjiI CACGTC 1 cut(s) 2330
Alw21I GWGCWC 2 cut(s) 2012, 2111
Alw26I GTCTC 5 cut(s) 242, 640, 1499, 2079, 2336
AlwI GGATC 4 cut(s) 233, 1065, 1806, 2301
AlwNI CAGNNNCTG 2 cut(s) 1922, 2077
Ama87I CYCGRG 1 cut(s) 2577
Aor13HI TCCGGA 2 cut(s) 1246, 1792
AoxI GGCC 5 cut(s) 496, 1066, 1446, 2260, 2403
ApoI RAATTY 7 cut(s) 1142, 1181, 1217, 1831, 1932, 2125, 2452
AseI ATTAAT 2 cut(s) 1055, 2196
Asp700I GAANNNNTTC 1 cut(s) 1254
AspLEI GCGC 3 cut(s) 1653, 2210, 2413
AspS9I GGNCC 1 cut(s) 496
AsuC2I CCSGG 1 cut(s) 1004
AsuHPI GGTGA 7 cut(s) 562, 689, 1307, 1603, 1825, 1958, 2386
AvaI CYCGRG 1 cut(s) 2577
BaeGI GKGCMC 1 cut(s) 2578
BalI TGGCCA 1 cut(s) 2405
BanII GRGCYC 1 cut(s) 2111
BbsI GAAGAC 3 cut(s) 744, 853, 1094
Bbv12I GWGCWC 2 cut(s) 2012, 2111
BccI CCATC 4 cut(s) 1285, 1304, 1388, 1532
BceAI ACGGC 2 cut(s) 1708, 2107
BclI TGATCA 1 cut(s) 1663
BcnI CCSGG 1 cut(s) 1004
BcoDI GTCTC 5 cut(s) 242, 640, 1499, 2079, 2336
BfaI CTAG 7 cut(s) 1049, 1367, 1580, 1712, 2217, 2414, 2568
BfmI CTRYAG 3 cut(s) 243, 252, 1137
BfuAI ACCTGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 1004
BmeT110I CYCGRG 1 cut(s) 2577
BmgBI CACGTC 1 cut(s) 2330
BmgT120I GGNCC 1 cut(s) 496
BmiI GGNNCC 3 cut(s) 456, 497, 825
BmrFI CCNGG 1 cut(s) 1004
BmrI ACTGGG 1 cut(s) 2402
BmsI GCATC 7 cut(s) 166, 733, 889, 1573, 1659, 1896, 2470
BmuI ACTGGG 1 cut(s) 2402
BpiI GAAGAC 3 cut(s) 744, 853, 1094
BpmI CTGGAG 1 cut(s) 2210
BpuEI CTTGAG 4 cut(s) 775, 1787, 2215, 2282
BpuMI CCSGG 1 cut(s) 1004
BsaI GGTCTC 1 cut(s) 640
BsaJI CCNNGG 8 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2578, 2625
BsaWI WCCGGW 3 cut(s) 1246, 1792, 1885
BsaXI ACNNNNNCTCC 4 cut(s) 1149, 1179, 1389, 1419
Bsc4I CCNNNNNNNGG 6 cut(s) 464, 819, 909, 1075, 1101, 2631
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 5 cut(s) 273, 327, 1203, 2193, 2397
BseAI TCCGGA 2 cut(s) 1246, 1792
BseDI CCNNGG 8 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2578, 2625
BseGI GGATG 8 cut(s) 136, 790, 904, 1296, 1911, 2334, 2588, 2644
BseLI CCNNNNNNNGG 6 cut(s) 464, 819, 909, 1075, 1101, 2631
BseMII CTCAG 3 cut(s) 30, 171, 2084
BseNI ACTGG 5 cut(s) 273, 327, 1203, 2193, 2397
BseRI GAGGAG 2 cut(s) 557, 2619
BseSI GKGCMC 1 cut(s) 2578
BseYI CCCAGC 2 cut(s) 54, 2666
BsgI GTGCAG 3 cut(s) 1572, 1582, 2063
Bsh1236I CGCG 1 cut(s) 1653
BshFI GGCC 5 cut(s) 498, 1068, 1448, 2262, 2405
BsiHKAI GWGCWC 2 cut(s) 2012, 2111
BsiHKCI CYCGRG 1 cut(s) 2577
BsiSI CCGG 5 cut(s) 800, 1004, 1247, 1793, 1886
BslFI GGGAC 1 cut(s) 1584
BslI CCNNNNNNNGG 6 cut(s) 464, 819, 909, 1075, 1101, 2631
BsmAI GTCTC 5 cut(s) 242, 640, 1499, 2079, 2336
BsmBI CGTCTC 1 cut(s) 2336
BsmFI GGGAC 1 cut(s) 1584
BsmI GAATGC 2 cut(s) 279, 2626
BsnI GGCC 5 cut(s) 498, 1068, 1448, 2262, 2405
Bso31I GGTCTC 1 cut(s) 640
BsoBI CYCGRG 1 cut(s) 2577
Bsp1286I GDGCHC 3 cut(s) 2012, 2111, 2578
Bsp13I TCCGGA 2 cut(s) 1246, 1792
Bsp143I GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
Bsp19I CCATGG 2 cut(s) 1074, 1959
BspACI CCGC 3 cut(s) 191, 1539, 1653
BspANI GGCC 5 cut(s) 498, 1068, 1448, 2262, 2405
BspCNI CTCAG 3 cut(s) 29, 172, 2083
BspEI TCCGGA 2 cut(s) 1246, 1792
BspFNI CGCG 1 cut(s) 1653
BspLI GGNNCC 3 cut(s) 456, 497, 825
BspMAI CTGCAG 2 cut(s) 256, 1141
BspMI ACCTGC 1 cut(s) 202
BspPI GGATC 4 cut(s) 233, 1065, 1806, 2301
BspTNI GGTCTC 1 cut(s) 640
BsrBI CCGCTC 1 cut(s) 1539
BsrFI RCCGGY 1 cut(s) 799
BsrI ACTGG 5 cut(s) 273, 327, 1203, 2193, 2397
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 8 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2578, 2625
BssMI GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
BssT1I CCWWGG 7 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2625
Bst4CI ACNGT 8 cut(s) 107, 244, 440, 463, 883, 1063, 2054, 2353
Bst6I CTCTTC 2 cut(s) 1179, 2543
BstAPI GCANNNNNTGC 1 cut(s) 260
BstC8I GCNNGC 5 cut(s) 1081, 1446, 1488, 1674, 2206
BstDEI CTNAG 4 cut(s) 16, 180, 1892, 2070
BstDSI CCRYGG 2 cut(s) 1074, 1959
BstF5I GGATG 8 cut(s) 136, 790, 904, 1296, 1911, 2334, 2588, 2644
BstFNI CGCG 1 cut(s) 1653
BstHHI GCGC 3 cut(s) 1653, 2210, 2413
BstKTI GATC 7 cut(s) 228, 624, 1073, 1330, 1666, 1801, 2296
BstMAI GTCTC 5 cut(s) 242, 640, 1499, 2079, 2336
BstMBI GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
BstMWI GCNNNNNNNGC 9 cut(s) 199, 208, 260, 269, 718, 1397, 1964, 2210, 2259
BstNSI RCATGY 2 cut(s) 1490, 2067
BstSCI CCNGG 1 cut(s) 1002
BstSFI CTRYAG 3 cut(s) 243, 252, 1137
BstSLI GKGCMC 1 cut(s) 2578
BstUI CGCG 1 cut(s) 1653
BstV2I GAAGAC 3 cut(s) 744, 853, 1094
BstX2I RGATCY 3 cut(s) 225, 1798, 2293
BstYI RGATCY 3 cut(s) 225, 1798, 2293
BsuRI GGCC 5 cut(s) 498, 1068, 1448, 2262, 2405
BtgI CCRYGG 2 cut(s) 1074, 1959
BtrI CACGTC 1 cut(s) 2330
BtsCI GGATG 8 cut(s) 136, 790, 904, 1296, 1911, 2334, 2588, 2644
BtsI GCAGTG 2 cut(s) 1570, 2578
BtsIMutI CAGTG 5 cut(s) 445, 468, 1210, 1570, 2578
BveI ACCTGC 1 cut(s) 202
Cac8I GCNNGC 5 cut(s) 1081, 1446, 1488, 1674, 2206
CaiI CAGNNNCTG 2 cut(s) 1922, 2077
CfoI GCGC 3 cut(s) 1653, 2210, 2413
Cfr10I RCCGGY 1 cut(s) 799
Cfr13I GGNCC 1 cut(s) 496
CseI GACGC 1 cut(s) 710
Csp6I GTAC 6 cut(s) 215, 337, 691, 1236, 2019, 2220
CviQI GTAC 6 cut(s) 215, 337, 691, 1236, 2019, 2220
DdeI CTNAG 4 cut(s) 16, 180, 1892, 2070
DpnI GATC 7 cut(s) 227, 623, 1072, 1329, 1665, 1800, 2295
DpnII GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
EaeI YGGCCR 2 cut(s) 1066, 2403
Eam1104I CTCTTC 2 cut(s) 1179, 2543
EarI CTCTTC 2 cut(s) 1179, 2543
Ecl136II GAGCTC 1 cut(s) 2109
Eco130I CCWWGG 7 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2625
Eco24I GRGCYC 1 cut(s) 2111
Eco31I GGTCTC 1 cut(s) 640
Eco32I GATATC 2 cut(s) 658, 1000
Eco53kI GAGCTC 1 cut(s) 2109
Eco57I CTGAAG 4 cut(s) 730, 756, 1658, 2656
Eco88I CYCGRG 1 cut(s) 2577
EcoICRI GAGCTC 1 cut(s) 2109
EcoRI GAATTC 1 cut(s) 1932
EcoRV GATATC 2 cut(s) 658, 1000
EcoT14I CCWWGG 7 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2625
EcoT22I ATGCAT 1 cut(s) 1416
EcoT38I GRGCYC 1 cut(s) 2111
ErhI CCWWGG 7 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2625
Esp3I CGTCTC 1 cut(s) 2336
FalI AAGNNNNNCTT 4 cut(s) 966, 998, 2008, 2040
FaqI GGGAC 1 cut(s) 1584
FauNDI CATATG 2 cut(s) 894, 1842
FbaI TGATCA 1 cut(s) 1663
FokI GGATG 8 cut(s) 143, 797, 911, 1303, 1918, 2321, 2595, 2651
FriOI GRGCYC 1 cut(s) 2111
FspBI CTAG 7 cut(s) 1049, 1367, 1580, 1712, 2217, 2414, 2568
GlaI GCGC 3 cut(s) 1652, 2209, 2412
GsaI CCCAGC 2 cut(s) 58, 2670
GsuI CTGGAG 1 cut(s) 2210
HaeIII GGCC 5 cut(s) 498, 1068, 1448, 2262, 2405
HapII CCGG 5 cut(s) 800, 1004, 1247, 1793, 1886
HgaI GACGC 1 cut(s) 710
HhaI GCGC 3 cut(s) 1653, 2210, 2413
Hin6I GCGC 3 cut(s) 1651, 2208, 2411
HinP1I GCGC 3 cut(s) 1651, 2208, 2411
HincII GTYRAC 2 cut(s) 1927, 2061
HindII GTYRAC 2 cut(s) 1927, 2061
HinfI GANTC 7 cut(s) 59, 473, 750, 1105, 1423, 1656, 2248
HpaII CCGG 5 cut(s) 800, 1004, 1247, 1793, 1886
HphI GGTGA 7 cut(s) 562, 689, 1307, 1603, 1825, 1958, 2386
Hpy166II GTNNAC 3 cut(s) 680, 1927, 2061
Hpy188I TCNGA 9 cut(s) 749, 877, 1179, 1638, 1668, 1682, 2240, 2451, 2675
Hpy8I GTNNAC 3 cut(s) 680, 1927, 2061
HpyAV CCTTC 7 cut(s) 602, 958, 1292, 2273, 2365, 2594, 2672
HpyCH4III ACNGT 8 cut(s) 107, 244, 440, 463, 883, 1063, 2054, 2353
HpyCH4IV ACGT 3 cut(s) 1455, 1995, 2329
HpyF10VI GCNNNNNNNGC 9 cut(s) 199, 208, 260, 269, 718, 1397, 1964, 2210, 2259
HpyF3I CTNAG 4 cut(s) 16, 180, 1892, 2070
HpySE526I ACGT 3 cut(s) 1455, 1995, 2329
HspAI GCGC 3 cut(s) 1651, 2208, 2411
Kpn2I TCCGGA 2 cut(s) 1246, 1792
Ksp22I TGATCA 1 cut(s) 1663
Kzo9I GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
LmnI GCTCC 5 cut(s) 454, 1397, 1536, 2329, 2653
LweI GCATC 7 cut(s) 166, 733, 889, 1573, 1659, 1896, 2470
MaeI CTAG 7 cut(s) 1049, 1367, 1580, 1712, 2217, 2414, 2568
MaeII ACGT 3 cut(s) 1455, 1995, 2329
MaeIII GTNAC 9 cut(s) 5, 329, 349, 370, 930, 1451, 2048, 2347, 2681
MalI GATC 7 cut(s) 227, 623, 1072, 1329, 1665, 1800, 2295
MbiI CCGCTC 1 cut(s) 1539
MboI GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
MfeI CAATTG 2 cut(s) 651, 2102
MflI RGATCY 3 cut(s) 225, 1798, 2293
MhlI GDGCHC 3 cut(s) 2012, 2111, 2578
MlsI TGGCCA 1 cut(s) 2405
MluNI TGGCCA 1 cut(s) 2405
MlyI GAGTC 3 cut(s) 759, 1114, 2242
MmeI TCCRAC 3 cut(s) 499, 1268, 1365
Mox20I TGGCCA 1 cut(s) 2405
Mph1103I ATGCAT 1 cut(s) 1416
MroI TCCGGA 2 cut(s) 1246, 1792
MroXI GAANNNNTTC 1 cut(s) 1254
MscI TGGCCA 1 cut(s) 2405
MseI TTAA 7 cut(s) 21, 146, 603, 1055, 1199, 1371, 2196
MslI CAYNNNNRTG 6 cut(s) 897, 1558, 1594, 2085, 2343, 2506
Msp20I TGGCCA 1 cut(s) 2405
MspI CCGG 5 cut(s) 800, 1004, 1247, 1793, 1886
MspR9I CCNGG 1 cut(s) 1004
MunI CAATTG 2 cut(s) 651, 2102
Mva1269I GAATGC 2 cut(s) 279, 2626
MvnI CGCG 1 cut(s) 1653
MwoI GCNNNNNNNGC 9 cut(s) 199, 208, 260, 269, 718, 1397, 1964, 2210, 2259
NciI CCSGG 1 cut(s) 1004
NcoI CCATGG 2 cut(s) 1074, 1959
NdeI CATATG 2 cut(s) 894, 1842
NdeII GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
NlaIV GGNNCC 3 cut(s) 456, 497, 825
NmuCI GTSAC 6 cut(s) 349, 370, 930, 1451, 2048, 2347
NsiI ATGCAT 1 cut(s) 1416
NspI RCATGY 2 cut(s) 1490, 2067
PaeI GCATGC 1 cut(s) 1490
PcsI WCGNNNNNNNCGW 1 cut(s) 1347
PctI GAATGC 2 cut(s) 279, 2626
PdmI GAANNNNTTC 1 cut(s) 1254
PfeI GAWTC 4 cut(s) 59, 473, 1423, 1656
PfoI TCCNGGA 1 cut(s) 1002
PleI GAGTC 3 cut(s) 758, 1113, 2242
PpsI GAGTC 3 cut(s) 758, 1113, 2242
PshBI ATTAAT 2 cut(s) 1055, 2196
Psp124BI GAGCTC 1 cut(s) 2111
PspFI CCCAGC 2 cut(s) 54, 2666
PspN4I GGNNCC 3 cut(s) 456, 497, 825
PspPI GGNCC 1 cut(s) 496
PstI CTGCAG 2 cut(s) 256, 1141
PstNI CAGNNNCTG 2 cut(s) 1922, 2077
PsuI RGATCY 3 cut(s) 225, 1798, 2293
RsaI GTAC 6 cut(s) 216, 338, 692, 1237, 2020, 2221
RsaNI GTAC 6 cut(s) 215, 337, 691, 1236, 2019, 2220
RseI CAYNNNNRTG 6 cut(s) 897, 1558, 1594, 2085, 2343, 2506
SacI GAGCTC 1 cut(s) 2111
SaqAI TTAA 7 cut(s) 21, 146, 603, 1055, 1199, 1371, 2196
Sau3AI GATC 7 cut(s) 225, 621, 1070, 1327, 1663, 1798, 2293
Sau96I GGNCC 1 cut(s) 496
SchI GAGTC 3 cut(s) 759, 1114, 2242
ScrFI CCNGG 1 cut(s) 1004
SduI GDGCHC 3 cut(s) 2012, 2111, 2578
SfaNI GCATC 7 cut(s) 166, 733, 889, 1573, 1659, 1896, 2470
SfcI CTRYAG 3 cut(s) 243, 252, 1137
SmiMI CAYNNNNRTG 6 cut(s) 897, 1558, 1594, 2085, 2343, 2506
SmlI CTYRAG 4 cut(s) 754, 1802, 2230, 2297
SmoI CTYRAG 4 cut(s) 754, 1802, 2230, 2297
SphI GCATGC 1 cut(s) 1490
SsiI CCGC 3 cut(s) 191, 1539, 1653
SspI AATATT 1 cut(s) 1826
SspMI CTAG 7 cut(s) 1049, 1367, 1580, 1712, 2217, 2414, 2568
SstI GAGCTC 1 cut(s) 2111
StyD4I CCNGG 1 cut(s) 1002
StyI CCWWGG 7 cut(s) 126, 639, 1074, 1809, 1959, 2257, 2625
TaaI ACNGT 8 cut(s) 107, 244, 440, 463, 883, 1063, 2054, 2353
TaiI ACGT 3 cut(s) 1458, 1998, 2332
TaqI TCGA 2 cut(s) 291, 994
TaqII GACCGA 1 cut(s) 1944
TatI WGTACW 2 cut(s) 1235, 2219
TauI GCSGC 1 cut(s) 193
TfiI GAWTC 4 cut(s) 59, 473, 1423, 1656
Tru1I TTAA 7 cut(s) 21, 146, 603, 1055, 1199, 1371, 2196
Tru9I TTAA 7 cut(s) 21, 146, 603, 1055, 1199, 1371, 2196
TscAI CASTG 5 cut(s) 445, 468, 1210, 1570, 2578
TseFI GTSAC 6 cut(s) 349, 370, 930, 1451, 2048, 2347
Tsp45I GTSAC 6 cut(s) 349, 370, 930, 1451, 2048, 2347
TspGWI ACGGA 2 cut(s) 354, 2306
TspRI CASTG 5 cut(s) 445, 468, 1210, 1570, 2578
VspI ATTAAT 2 cut(s) 1055, 2196
XapI RAATTY 7 cut(s) 1142, 1181, 1217, 1831, 1932, 2125, 2452
XceI RCATGY 2 cut(s) 1490, 2067
XmnI GAANNNNTTC 1 cut(s) 1254
XspI CTAG 7 cut(s) 1049, 1367, 1580, 1712, 2217, 2414, 2568
Zsp2I ATGCAT 1 cut(s) 1416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.