Rw2G049850

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000363
Physical Location & Seq
Reverse (-)
77447433 .. 77449206
1774 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G049850.1

Sequence Viewer

Length: 1455 bp
ATGTGTGCGGTACTATGGATGCTCAACAGGGTGTTTGCCAAGGGACAAAGCGTGGAACTTGTTTCAGGAGGTATGGGAGACCAGGTGTTCCCTCTCTTGAAATTCAGTTACGATAATTTACCTAGTGAGAAAGTCAGATCATGCTTCTTGCACTGTGCTTTATTTCCTGAAGACTATCCCATACCTAAAGATGATTTAACATGCTTTTGGATGTGTGAAAATATGTTAGATGAACATACTGATCTAGAAGAAGCACGAGATGAGAGCTACCATATCATAGGTACTCTTCTCAATGCATGTATGCTAGAAGAGAGTAAAGAAGGTTGTGTAAAAATGCATGATGTTGTTCGTGACATGGCATTGTGGTTGGCTTGTGATCCTAAGAAAGCAGAAGAGAGTTTTCTTGTGTGTGCAGGCGCTGATTTGATTGAAGCACCAATTGCCGAAAAATGGAAGAACTTGAAAAGGGTATCATTGATGGCTAACCACATCAAAGAATTGGTTGAAAAACCAAACTCTCCATATCTGTTGACTTTGTTTCTCAGGAGTAATCATCTGAAAATGATTTTTACAGGCTTCTTTGACTCTATGTCTAATCTGCTGGTTTTAGATCTGTCTCGCAATATGGATCTAACCCAACTGCCAGTAGGAGTTTCAAGCTTGGTTTCACTACAACATCTCAATTTGTCACACACTGGTATAAGAGAGTTGCCGATTGAGTTAAAGTGCTTAAAGAGGCTGACATATTTGAATTTTGAGTATAAACTGAAACTTGATTCTCTTCCACCAACCATACTATCAAGTTTTTCGATGCTGAAAGTTCTGAGAATGGAATTGCATGGTTTGAAACACCTGGACTACTTGACTCTGGACATTAGAAGTACCTCTTGTTTCCAAAACTTCGTCAGCAACAAATTAACAAAACATCTTGATCAGCTTGAGATTAGCGGCTATCCTAATATGGAAGATATAATAGTGGACATTGATTGGGCAGGAGGACGAGCATGTAACAATCCTCGGAACTCAATGATGAGAATCCAGAGCTGCTTCCTTGGCCTTCAATACATAATGGTAAACGCATGTGCAGATCTCAAGGACTTGTCACAGCTCTGTTTTGTTCCAAATCTCCAATTTGTTTTAGTGTTAAGATGCTCTAGAATGGAGACAATAATCAATTTGAGTAAACTGGGTGGAGATGCAAATGTGGCAAAAGAATTTAACCTGTTTGCGAAACTGAAGCGTCTTGATTTGGCATTTCTACCAGCGTTGGAGAGCGTATACAAGACTGCCTTGCCCTTACCATCACTGAAGAAACTGCCACTCAACTCTAGCACTGCTCAAGGAGACGGATGCAATTTTAACCTAAGAGGAGAGCAGAAGTGGTGGGATGGGATAGAGTGGGAGGACCAACTTGCACTAGATACTATTCGTCCCTGCTACATGAGTTGGGATTGA

Protein Analysis

484

Amino Acids

55.16

Weight (kDa)

5.65

Isoelectric Point (pI)

50.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 54 - 120 5e-09 Disease resistance protein Winged helix domain
LRR_8 PF13855 176 - 233 4.4e-10 Leucine rich repeat
LRR_14 PF23598 196 - 334 4e-06 Leucine-rich repeat region
LRR_RPS2 PF23247 346 - 429 2.1e-06 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 1278
AciI CCGC 2 cut(s) 8, 948
AclWI GGATC 2 cut(s) 371, 636
AcsI RAATTY 3 cut(s) 101, 751, 1214
AcuI CTGAAG 3 cut(s) 189, 1256, 1328
AfaI GTAC 3 cut(s) 12, 283, 883
AfiI CCNNNNNNNGG 1 cut(s) 450
AgsI TTSAA 8 cut(s) 100, 431, 463, 506, 657, 751, 847, 1061
AhdI GACNNNNNGTC 1 cut(s) 589
AjnI CCWGG 2 cut(s) 81, 852
AluBI AGCT 5 cut(s) 267, 660, 937, 1044, 1108
AluI AGCT 5 cut(s) 267, 660, 937, 1044, 1108
Alw26I GTCTC 4 cut(s) 72, 621, 1157, 1338
AlwI GGATC 2 cut(s) 371, 636
AlwNI CAGNNNCTG 1 cut(s) 419
AoxI GGCC 1 cut(s) 1054
ApeKI GCWGC 1 cut(s) 1044
ApoI RAATTY 3 cut(s) 101, 751, 1214
AspLEI GCGC 1 cut(s) 419
AspS9I GGNCC 1 cut(s) 1405
AvaII GGWCC 1 cut(s) 1405
BauI CACGAG 1 cut(s) 255
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 1031
BccI CCATC 3 cut(s) 472, 1309, 1382
BciT130I CCWGG 2 cut(s) 83, 854
BclI TGATCA 1 cut(s) 931
BcoDI GTCTC 4 cut(s) 72, 621, 1157, 1338
BfaI CTAG 6 cut(s) 123, 245, 305, 1155, 1329, 1418
BfoI RGCGCY 1 cut(s) 420
BglII AGATCT 2 cut(s) 610, 1087
BisI GCNGC 2 cut(s) 949, 1045
BlsI GCNGC 2 cut(s) 950, 1046
Bme1390I CCNGG 2 cut(s) 83, 854
Bme18I GGWCC 1 cut(s) 1405
BmeRI GACNNNNNGTC 1 cut(s) 589
BmgT120I GGNCC 1 cut(s) 1405
BmrFI CCNGG 2 cut(s) 83, 854
BmrI ACTGGG 1 cut(s) 1196
BmsI GCATC 5 cut(s) 9, 801, 1139, 1186, 1340
BmuI ACTGGG 1 cut(s) 1196
BpiI GAAGAC 1 cut(s) 177
BpuEI CTTGAG 3 cut(s) 959, 1076, 1323
BsaBI GATNNNNATC 1 cut(s) 1034
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 39, 1016, 1051
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 1 cut(s) 450
Bse1I ACTGG 3 cut(s) 644, 700, 1191
Bse8I GATNNNNATC 1 cut(s) 1034
BseBI CCWGG 2 cut(s) 83, 854
BseDI CCNNGG 3 cut(s) 39, 1016, 1051
BseGI GGATG 4 cut(s) 24, 216, 1355, 1393
BseJI GATNNNNATC 1 cut(s) 1034
BseLI CCNNNNNNNGG 1 cut(s) 450
BseMII CTCAG 2 cut(s) 556, 815
BseNI ACTGG 3 cut(s) 644, 700, 1191
BseRI GAGGAG 1 cut(s) 1383
BseXI GCAGC 1 cut(s) 1031
BsgI GTGCAG 2 cut(s) 432, 1104
BshFI GGCC 1 cut(s) 1056
BslFI GGGAC 2 cut(s) 57, 1416
BslI CCNNNNNNNGG 1 cut(s) 450
BsmAI GTCTC 4 cut(s) 72, 621, 1157, 1338
BsmBI CGTCTC 1 cut(s) 1338
BsmFI GGGAC 2 cut(s) 57, 1416
BsnI GGCC 1 cut(s) 1056
Bso31I GGTCTC 1 cut(s) 72
Bsp143I GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
BspACI CCGC 2 cut(s) 8, 948
BspANI GGCC 1 cut(s) 1056
BspCNI CTCAG 2 cut(s) 555, 816
BspPI GGATC 2 cut(s) 371, 636
BspTNI GGTCTC 1 cut(s) 72
BsrI ACTGG 3 cut(s) 644, 700, 1191
BssECI CCNNGG 3 cut(s) 39, 1016, 1051
BssMI GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
BssNAI GTATAC 1 cut(s) 1279
BssSI CACGAG 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 39, 1051
Bst1107I GTATAC 1 cut(s) 1279
Bst2BI CACGAG 1 cut(s) 255
Bst2UI CCWGG 2 cut(s) 83, 854
Bst4CI ACNGT 1 cut(s) 155
Bst6I CTCTTC 4 cut(s) 291, 303, 387, 786
BstAPI GCANNNNNTGC 1 cut(s) 440
BstC8I GCNNGC 1 cut(s) 415
BstDEI CTNAG 4 cut(s) 381, 542, 824, 1364
BstF5I GGATG 4 cut(s) 24, 216, 1355, 1393
BstH2I RGCGCY 1 cut(s) 420
BstHHI GCGC 1 cut(s) 419
BstKTI GATC 7 cut(s) 140, 244, 379, 613, 631, 934, 1090
BstMAI GTCTC 4 cut(s) 72, 621, 1157, 1338
BstMBI GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
BstMWI GCNNNNNNNGC 3 cut(s) 440, 1053, 1205
BstNI CCWGG 2 cut(s) 83, 854
BstNSI RCATGY 4 cut(s) 204, 300, 1008, 1083
BstSCI CCNGG 2 cut(s) 81, 852
BstV1I GCAGC 1 cut(s) 1031
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 3 cut(s) 610, 628, 1087
BstYI RGATCY 3 cut(s) 610, 628, 1087
BstZ17I GTATAC 1 cut(s) 1279
BsuRI GGCC 1 cut(s) 1056
BtsCI GGATG 4 cut(s) 24, 216, 1355, 1393
BtsI GCAGTG 1 cut(s) 1332
BtsIMutI CAGTG 4 cut(s) 151, 693, 1304, 1332
Cac8I GCNNGC 1 cut(s) 415
CaiI CAGNNNCTG 1 cut(s) 419
CfoI GCGC 1 cut(s) 419
Cfr13I GGNCC 1 cut(s) 1405
CseI GACGC 1 cut(s) 1229
CsiI ACCWGGT 1 cut(s) 81
Csp6I GTAC 3 cut(s) 11, 282, 882
CviAII CATG 9 cut(s) 141, 201, 297, 338, 355, 839, 1005, 1080, 1441
CviQI GTAC 3 cut(s) 11, 282, 882
DdeI CTNAG 4 cut(s) 381, 542, 824, 1364
DpnI GATC 7 cut(s) 139, 243, 378, 612, 630, 933, 1089
DpnII GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
DriI GACNNNNNGTC 1 cut(s) 589
Eam1104I CTCTTC 4 cut(s) 291, 303, 387, 786
Eam1105I GACNNNNNGTC 1 cut(s) 589
EarI CTCTTC 4 cut(s) 291, 303, 387, 786
Eco130I CCWWGG 2 cut(s) 39, 1051
Eco31I GGTCTC 1 cut(s) 72
Eco47I GGWCC 1 cut(s) 1405
Eco57I CTGAAG 3 cut(s) 189, 1256, 1328
EcoRII CCWGG 2 cut(s) 81, 852
EcoT14I CCWWGG 2 cut(s) 39, 1051
EcoT22I ATGCAT 2 cut(s) 298, 339
ErhI CCWWGG 2 cut(s) 39, 1051
Esp3I CGTCTC 1 cut(s) 1338
FaeI CATG 9 cut(s) 144, 204, 300, 341, 358, 842, 1008, 1083, 1444
FalI AAGNNNNNCTT 4 cut(s) 871, 903, 1274, 1306
FaqI GGGAC 2 cut(s) 57, 1416
FatI CATG 9 cut(s) 140, 200, 296, 337, 354, 838, 1004, 1079, 1440
FbaI TGATCA 1 cut(s) 931
FblI GTMKAC 1 cut(s) 1278
Fnu4HI GCNGC 2 cut(s) 949, 1045
FokI GGATG 4 cut(s) 31, 223, 1362, 1400
Fsp4HI GCNGC 2 cut(s) 949, 1045
FspBI CTAG 6 cut(s) 123, 245, 305, 1155, 1329, 1418
GlaI GCGC 1 cut(s) 418
GluI GCNGC 2 cut(s) 949, 1045
HaeII RGCGCY 1 cut(s) 420
HaeIII GGCC 1 cut(s) 1056
HgaI GACGC 1 cut(s) 1229
HhaI GCGC 1 cut(s) 419
Hin1II CATG 9 cut(s) 144, 204, 300, 341, 358, 842, 1008, 1083, 1444
Hin6I GCGC 1 cut(s) 417
HinP1I GCGC 1 cut(s) 417
HincII GTYRAC 1 cut(s) 531
HindII GTYRAC 1 cut(s) 531
HindIII AAGCTT 1 cut(s) 658
HinfI GANTC 4 cut(s) 584, 776, 865, 1035
Hpy166II GTNNAC 5 cut(s) 531, 979, 1075, 1184, 1279
Hpy188I TCNGA 4 cut(s) 137, 558, 825, 1020
Hpy8I GTNNAC 5 cut(s) 531, 979, 1075, 1184, 1279
HpyAV CCTTC 2 cut(s) 314, 1067
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 9 cut(s) 151, 296, 337, 413, 838, 1085, 1199, 1353, 1415
HpyF10VI GCNNNNNNNGC 3 cut(s) 440, 1053, 1205
HpyF3I CTNAG 4 cut(s) 381, 542, 824, 1364
Hsp92II CATG 9 cut(s) 144, 204, 300, 341, 358, 842, 1008, 1083, 1444
HspAI GCGC 1 cut(s) 417
Ksp22I TGATCA 1 cut(s) 931
Kzo9I GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
Lsp1109I GCAGC 1 cut(s) 1031
LweI GCATC 5 cut(s) 9, 801, 1139, 1186, 1340
MabI ACCWGGT 1 cut(s) 81
MaeI CTAG 6 cut(s) 123, 245, 305, 1155, 1329, 1418
MaeIII GTNAC 5 cut(s) 107, 350, 687, 1007, 1101
MalI GATC 7 cut(s) 139, 243, 378, 612, 630, 933, 1089
MboI GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
MboII GAAGA 9 cut(s) 182, 260, 278, 320, 404, 466, 773, 977, 1321
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 3 cut(s) 610, 628, 1087
MlyI GAGTC 2 cut(s) 578, 859
MmeI TCCRAC 1 cut(s) 1248
MnlI CCTC 8 cut(s) 62, 102, 729, 895, 989, 1026, 1361, 1396
Mph1103I ATGCAT 2 cut(s) 298, 339
MseI TTAA 7 cut(s) 197, 722, 731, 917, 1145, 1218, 1359
MspR9I CCNGG 2 cut(s) 83, 854
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 2 cut(s) 83, 854
MwoI GCNNNNNNNGC 3 cut(s) 440, 1053, 1205
NdeII GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
NlaIII CATG 9 cut(s) 144, 204, 300, 341, 358, 842, 1008, 1083, 1444
NmuCI GTSAC 3 cut(s) 350, 687, 1101
NsiI ATGCAT 2 cut(s) 298, 339
NspI RCATGY 4 cut(s) 204, 300, 1008, 1083
PfeI GAWTC 2 cut(s) 776, 1035
PkrI GCNGC 2 cut(s) 950, 1046
PleI GAGTC 2 cut(s) 578, 859
PpsI GAGTC 2 cut(s) 578, 859
Psp6I CCWGG 2 cut(s) 81, 852
PspGI CCWGG 2 cut(s) 81, 852
PspPI GGNCC 1 cut(s) 1405
PstNI CAGNNNCTG 1 cut(s) 419
PsuI RGATCY 3 cut(s) 610, 628, 1087
RsaI GTAC 3 cut(s) 12, 283, 883
RsaNI GTAC 3 cut(s) 11, 282, 882
SaqAI TTAA 7 cut(s) 197, 722, 731, 917, 1145, 1218, 1359
SatI GCNGC 2 cut(s) 949, 1045
Sau3AI GATC 7 cut(s) 137, 241, 376, 610, 628, 931, 1087
Sau96I GGNCC 1 cut(s) 1405
SchI GAGTC 2 cut(s) 578, 859
ScrFI CCNGG 2 cut(s) 83, 854
SexAI ACCWGGT 1 cut(s) 81
SfaNI GCATC 5 cut(s) 9, 801, 1139, 1186, 1340
SinI GGWCC 1 cut(s) 1405
SmlI CTYRAG 3 cut(s) 938, 1091, 1338
SmoI CTYRAG 3 cut(s) 938, 1091, 1338
SsiI CCGC 2 cut(s) 8, 948
SspMI CTAG 6 cut(s) 123, 245, 305, 1155, 1329, 1418
StyD4I CCNGG 2 cut(s) 81, 852
StyI CCWWGG 2 cut(s) 39, 1051
TaaI ACNGT 1 cut(s) 155
TaqI TCGA 1 cut(s) 809
TauI GCSGC 1 cut(s) 951
TfiI GAWTC 2 cut(s) 776, 1035
Tru1I TTAA 7 cut(s) 197, 722, 731, 917, 1145, 1218, 1359
Tru9I TTAA 7 cut(s) 197, 722, 731, 917, 1145, 1218, 1359
TscAI CASTG 4 cut(s) 158, 700, 1311, 1339
TseFI GTSAC 3 cut(s) 350, 687, 1101
TseI GCWGC 1 cut(s) 1044
Tsp45I GTSAC 3 cut(s) 350, 687, 1101
TspDTI ATGAA 1 cut(s) 246
TspGWI ACGGA 1 cut(s) 1362
TspRI CASTG 4 cut(s) 158, 700, 1311, 1339
VpaK11BI GGWCC 1 cut(s) 1405
XapI RAATTY 3 cut(s) 101, 751, 1214
XbaI TCTAGA 2 cut(s) 244, 1154
XceI RCATGY 4 cut(s) 204, 300, 1008, 1083
XmiI GTMKAC 1 cut(s) 1278
XspI CTAG 6 cut(s) 123, 245, 305, 1155, 1329, 1418
Zsp2I ATGCAT 2 cut(s) 298, 339
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.