Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0000363

Physical Location & Seq

Genomic Coordinates Reverse (-)

24797500 .. 24797958

Gene Structure 459 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1204900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 459 bp

ATGATGATAAAACAAAATTGCTTCCGTTGCCTTCAGTTCATAGAAGTATCACGATGCCTAGATCTCATAGACATGACTTGGCTCATTTTTGCTCCAAATCTCAGCCATTTATGTGTAGATGACTGCAATGATATTGAGAAAATAATCAATCTGGAAAGACTGGATGGAGTTGGAAATGTGGTACAAGAACTGAACCCTTTTGGAAAACATACCATTCTGATTTTGAGTTCGCTTCCACGACTGAGTAGCATACATGATAAGGCCTTGCCCTTTCTGTATTTGAAAGAAATCAAGGTACTTGCATGTACAGCGCTGAGAAAGCTTCCACTCAACTCCACAAGTGCTGAGGGGAGCAATATTGTAATCAGAGGACATGAATACTGGTGGTCTTCCTTAGAGTGGAAGGACGAAGATGCTCGAAATGTTTTTCTTCCCTGCTTTAGACGCGATATTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0006950 GO:0006952 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

ko04016 ko04626 map04016 map04626

Pfam Domains

Protein Families

LRR_8 NB-ARC

Protein Analysis

153

Amino Acids

17.59

Weight (kDa)

6.41

Isoelectric Point (pI)

43.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_RPS2	PF23247	3 - 108	4e-09	Plant disease resistance protein RPS2-like, leucine-rich repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0000363)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca	FvH4_6g30050 FvH4_6g48220
malus_domestica	MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica	Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis	pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis	RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata	RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora	Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii	Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa	Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha	Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana	Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	17
AfaI	GTAC	3 cut(s)	183, 297, 307
AfeI	AGCGCT	1 cut(s)	312
AfiI	CCNNNNNNNGG	1 cut(s)	399
AgsI	TTSAA	1 cut(s)	283
AluBI	AGCT	1 cut(s)	322
AluI	AGCT	1 cut(s)	322
Aor51HI	AGCGCT	1 cut(s)	312
AoxI	GGCC	1 cut(s)	261
AspLEI	GCGC	1 cut(s)	313
BbsI	GAAGAC	1 cut(s)	381
BbvCI	CCTCAGC	1 cut(s)	345
BccI	CCATC	1 cut(s)	158
BfaI	CTAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	314
BglII	AGATCT	1 cut(s)	61
BmsI	GCATC	2 cut(s)	44, 403
BpiI	GAAGAC	1 cut(s)	381
Bpu10I	CCTNAGC	1 cut(s)	345
Bsc4I	CCNNNNNNNGG	1 cut(s)	399
Bse1I	ACTGG	2 cut(s)	165, 386
Bse3DI	GCAATG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	169
BseLI	CCNNNNNNNGG	1 cut(s)	399
BseMI	GCAATG	1 cut(s)	133
BseMII	CTCAG	4 cut(s)	115, 233, 305, 336
BseNI	ACTGG	2 cut(s)	165, 386
Bsh1236I	CGCG	1 cut(s)	447
BshFI	GGCC	1 cut(s)	263
BslI	CCNNNNNNNGG	1 cut(s)	399
BsnI	GGCC	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	1 cut(s)	61
BspANI	GGCC	1 cut(s)	263
BspCNI	CTCAG	4 cut(s)	114, 234, 306, 337
BspFNI	CGCG	1 cut(s)	447
BsrDI	GCAATG	1 cut(s)	133
BsrGI	TGTACA	1 cut(s)	305
BsrI	ACTGG	2 cut(s)	165, 386
BssMI	GATC	1 cut(s)	61
BstAUI	TGTACA	1 cut(s)	305
BstDEI	CTNAG	5 cut(s)	101, 242, 314, 345, 394
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	1 cut(s)	447
BstH2I	RGCGCY	1 cut(s)	314
BstHHI	GCGC	1 cut(s)	313
BstKTI	GATC	1 cut(s)	64
BstMBI	GATC	1 cut(s)	61
BstMWI	GCNNNNNNNGC	4 cut(s)	27, 308, 319, 444
BstNSI	RCATGY	1 cut(s)	306
BstUI	CGCG	1 cut(s)	447
BstV2I	GAAGAC	1 cut(s)	381
BstX2I	RGATCY	1 cut(s)	61
BstYI	RGATCY	1 cut(s)	61
BsuRI	GGCC	1 cut(s)	263
BtsCI	GGATG	1 cut(s)	169
CfoI	GCGC	1 cut(s)	313
CseI	GACGC	1 cut(s)	453
Csp6I	GTAC	3 cut(s)	182, 296, 306
CviAII	CATG	4 cut(s)	73, 254, 303, 374
CviJI	RGCY	4 cut(s)	82, 105, 263, 322
CviKI_1	RGCY	4 cut(s)	82, 105, 263, 322
CviQI	GTAC	3 cut(s)	182, 296, 306
DdeI	CTNAG	5 cut(s)	101, 242, 314, 345, 394
DpnI	GATC	1 cut(s)	63
DpnII	GATC	1 cut(s)	61
Eco147I	AGGCCT	1 cut(s)	263
Eco47III	AGCGCT	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	17
FaeI	CATG	4 cut(s)	76, 257, 306, 377
FaiI	YATR	9 cut(s)	41, 68, 74, 112, 210, 251, 255, 304, 375
FatI	CATG	4 cut(s)	72, 253, 302, 373
FokI	GGATG	1 cut(s)	176
FspBI	CTAG	1 cut(s)	59
GlaI	GCGC	1 cut(s)	312
HaeII	RGCGCY	1 cut(s)	314
HaeIII	GGCC	1 cut(s)	263
HgaI	GACGC	1 cut(s)	453
HhaI	GCGC	1 cut(s)	313
Hin1II	CATG	4 cut(s)	76, 257, 306, 377
Hin6I	GCGC	1 cut(s)	311
HinP1I	GCGC	1 cut(s)	311
HindIII	AAGCTT	1 cut(s)	320
Hpy188I	TCNGA	2 cut(s)	219, 368
Hpy188III	TCNNGA	2 cut(s)	51, 152
HpyAV	CCTTC	2 cut(s)	41, 397
HpyCH4V	TGCA	2 cut(s)	126, 302
HpyF10VI	GCNNNNNNNGC	4 cut(s)	27, 308, 319, 444
HpyF3I	CTNAG	5 cut(s)	101, 242, 314, 345, 394
Hsp92II	CATG	4 cut(s)	76, 257, 306, 377
HspAI	GCGC	1 cut(s)	311
Kzo9I	GATC	1 cut(s)	61
LmnI	GCTCC	2 cut(s)	97, 351
LpnPI	CCDG	4 cut(s)	137, 146, 367, 448
LweI	GCATC	2 cut(s)	44, 403
MaeI	CTAG	1 cut(s)	59
MalI	GATC	1 cut(s)	63
MboI	GATC	1 cut(s)	61
MboII	GAAGA	3 cut(s)	381, 422, 422
MflI	RGATCY	1 cut(s)	61
MluCI	AATT	1 cut(s)	16
MmeI	TCCRAC	1 cut(s)	151
MnlI	CCTC	2 cut(s)	340, 362
MseI	TTAA	1 cut(s)	453
MslI	CAYNNNNRTG	2 cut(s)	71, 111
MvnI	CGCG	1 cut(s)	447
MwoI	GCNNNNNNNGC	4 cut(s)	27, 308, 319, 444
NdeII	GATC	1 cut(s)	61
NlaIII	CATG	4 cut(s)	76, 257, 306, 377
NspI	RCATGY	1 cut(s)	306
PceI	AGGCCT	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	61
RsaI	GTAC	3 cut(s)	183, 297, 307
RsaNI	GTAC	3 cut(s)	182, 296, 306
RseI	CAYNNNNRTG	2 cut(s)	71, 111
SaqAI	TTAA	1 cut(s)	453
Sau3AI	GATC	1 cut(s)	61
SetI	ASST	2 cut(s)	297, 324
SfaNI	GCATC	2 cut(s)	44, 403
SmiMI	CAYNNNNRTG	2 cut(s)	71, 111
Sse9I	AATT	1 cut(s)	16
SseBI	AGGCCT	1 cut(s)	263
SspI	AATATT	1 cut(s)	358
SspMI	CTAG	1 cut(s)	59
StuI	AGGCCT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	418
TasI	AATT	1 cut(s)	16
TatI	WGTACW	1 cut(s)	305
Tru1I	TTAA	1 cut(s)	453
Tru9I	TTAA	1 cut(s)	453
TspDTI	ATGAA	2 cut(s)	28, 390
TspGWI	ACGGA	1 cut(s)	14
XceI	RCATGY	1 cut(s)	306
XspI	CTAG	1 cut(s)	59

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.