RchiOBHm_Chr2g0167721

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000363
Physical Location & Seq
Reverse (-)
82123388 .. 82124376
989 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53548

Sequence Viewer

Length: 954 bp
ATGGGAGACCTGGTGTTCCCTCTCTTGAAATTCAGTTACGATAATTTACCTAGTGAGAAAGTCAGACCATGCTTCTTGTACTGTGCTTTATTTCCTGAAGACTATCCCATACCTAAAGATGATTTAGCATGCTTTTGGATGTGTGAAAATATGTTAGATGAACATACTGATCTAGAAGAAGCACGAGATGAGAGCTACCATATCATAGGTACTCTTCTCAATGCATGTATGCTAGAAGACAGTAAAGAAGGTTGTGCAAAAATGCATGATGTTGTTCGTGACATGGCATTGTGGTTGGCTTGTGATCCTAAGAAAGCAGAAGAGAGTTTTCTTGTGCGTGCAGGCGCTGATTTGATTGAAGCACCAATTGCCGAAAAATGGAAGAACTCGAAAAGGGTATCATTGATGGCTAACCACATCAAAGAATTGGTTGAAAAACCAAACTCTCCATATCTGTTGACTTTGTTTCTCAGGAGTAATCATCTGAAAATGATTATTACAGGCTTCTTTGACTCTATGTCTAATGTGCTGGTTTTAGATCTGTCTCGCAATATGGATCTAACCCAACTGCCAGTAGGAGTTTCAAGCTGGGTTTCACTACAACATCTCAATTTGTCACACACTGGTATAAGAGAGTTGCCGATTGAGTTAAAGTGCTTAAAGAGGCTGACATATTTGAATTTTGAGTATACAATGAAACTTGATTCTCTTCCACCAACCATACTATCAAGTTTTTCGATGCAAAAAGTTCTGAGAATGGTAAATTCTGGTACTTCTGATGATCGAAATCATTTTGATGATGAAAAAGCGATGGTAGAGGAATTGCATGGTTTGAAACACCTGGACTACTTGACTCTGGACATTAGAAGTACCTCTTGTTTCCAAAACTTCGTCAGCAACAAATTAGTGAAGTGCTGCACTCGAGCTCTACACCTCATGGGTTATGACTTGTGA

Protein Analysis

317

Amino Acids

36.4

Weight (kDa)

5.48

Isoelectric Point (pI)

53.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WHD_DRP PF23559 30 - 96 4.3e-09 Disease resistance protein Winged helix domain
LRR_8 PF13855 152 - 209 2.7e-08 Leucine rich repeat
LRR_14 PF23598 181 - 305 2.6e-09 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 689
AclWI GGATC 2 cut(s) 299, 564
AcsI RAATTY 3 cut(s) 29, 679, 763
AcuI CTGAAG 1 cut(s) 117
AfaI GTAC 4 cut(s) 80, 211, 772, 871
AfiI CCNNNNNNNGG 1 cut(s) 378
AgsI TTSAA 6 cut(s) 28, 359, 434, 585, 679, 835
AhdI GACNNNNNGTC 1 cut(s) 517
AjnI CCWGG 2 cut(s) 9, 840
AluBI AGCT 3 cut(s) 195, 588, 926
AluI AGCT 3 cut(s) 195, 588, 926
Alw21I GWGCWC 1 cut(s) 928
Alw26I GTCTC 1 cut(s) 549
AlwI GGATC 2 cut(s) 299, 564
AlwNI CAGNNNCTG 1 cut(s) 347
Ama87I CYCGRG 1 cut(s) 921
ApeKI GCWGC 1 cut(s) 915
ApoI RAATTY 3 cut(s) 29, 679, 763
AspLEI GCGC 1 cut(s) 347
AvaI CYCGRG 1 cut(s) 921
BanII GRGCYC 1 cut(s) 928
BauI CACGAG 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 105, 243
Bbv12I GWGCWC 1 cut(s) 928
BbvI GCAGC 1 cut(s) 902
BccI CCATC 2 cut(s) 400, 805
BciT130I CCWGG 2 cut(s) 11, 842
BcoDI GTCTC 1 cut(s) 549
BfaI CTAG 3 cut(s) 51, 173, 233
BfoI RGCGCY 1 cut(s) 348
BglII AGATCT 1 cut(s) 538
BisI GCNGC 1 cut(s) 916
BlsI GCNGC 1 cut(s) 917
Bme1390I CCNGG 2 cut(s) 11, 842
BmeRI GACNNNNNGTC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 921
BmrFI CCNGG 2 cut(s) 11, 842
BmsI GCATC 1 cut(s) 729
BpiI GAAGAC 2 cut(s) 105, 243
BsaBI GATNNNNATC 1 cut(s) 786
BsaXI ACNNNNNCTCC 1 cut(s) 27
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse1I ACTGG 2 cut(s) 572, 628
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 2 cut(s) 11, 842
BseGI GGATG 1 cut(s) 144
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMII CTCAG 2 cut(s) 484, 743
BseNI ACTGG 2 cut(s) 572, 628
BseXI GCAGC 1 cut(s) 902
BseYI CCCAGC 1 cut(s) 588
BsgI GTGCAG 2 cut(s) 360, 901
BsiHKAI GWGCWC 1 cut(s) 928
BsiHKCI CYCGRG 1 cut(s) 921
BslI CCNNNNNNNGG 1 cut(s) 378
BsmAI GTCTC 1 cut(s) 549
BsoBI CYCGRG 1 cut(s) 921
Bsp1286I GDGCHC 1 cut(s) 928
Bsp143I GATC 5 cut(s) 169, 304, 538, 556, 781
BspCNI CTCAG 2 cut(s) 483, 744
BspPI GGATC 2 cut(s) 299, 564
BsrI ACTGG 2 cut(s) 572, 628
BssMI GATC 5 cut(s) 169, 304, 538, 556, 781
BssNAI GTATAC 1 cut(s) 690
BssSI CACGAG 1 cut(s) 183
Bst1107I GTATAC 1 cut(s) 690
Bst2BI CACGAG 1 cut(s) 183
Bst2UI CCWGG 2 cut(s) 11, 842
Bst4CI ACNGT 2 cut(s) 83, 242
Bst6I CTCTTC 3 cut(s) 219, 315, 714
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 3 cut(s) 130, 339, 343
BstDEI CTNAG 3 cut(s) 309, 470, 752
BstF5I GGATG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 5 cut(s) 172, 307, 541, 559, 784
BstMAI GTCTC 1 cut(s) 549
BstMBI GATC 5 cut(s) 169, 304, 538, 556, 781
BstMWI GCNNNNNNNGC 1 cut(s) 368
BstNI CCWGG 2 cut(s) 11, 842
BstNSI RCATGY 2 cut(s) 132, 228
BstSCI CCNGG 2 cut(s) 9, 840
BstV1I GCAGC 1 cut(s) 902
BstV2I GAAGAC 2 cut(s) 105, 243
BstX2I RGATCY 2 cut(s) 538, 556
BstYI RGATCY 2 cut(s) 538, 556
BstZ17I GTATAC 1 cut(s) 690
BtgZI GCGATG 1 cut(s) 824
BtsCI GGATG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 621
Cac8I GCNNGC 3 cut(s) 130, 339, 343
CaiI CAGNNNCTG 1 cut(s) 347
CfoI GCGC 1 cut(s) 347
CsiI ACCWGGT 1 cut(s) 9
Csp6I GTAC 4 cut(s) 79, 210, 771, 870
CviAII CATG 7 cut(s) 69, 129, 225, 266, 283, 827, 937
CviJI RGCY 7 cut(s) 195, 299, 410, 504, 588, 667, 926
CviKI_1 RGCY 7 cut(s) 195, 299, 410, 504, 588, 667, 926
CviQI GTAC 4 cut(s) 79, 210, 771, 870
DdeI CTNAG 3 cut(s) 309, 470, 752
DpnI GATC 5 cut(s) 171, 306, 540, 558, 783
DpnII GATC 5 cut(s) 169, 304, 538, 556, 781
DriI GACNNNNNGTC 1 cut(s) 517
Eam1104I CTCTTC 3 cut(s) 219, 315, 714
Eam1105I GACNNNNNGTC 1 cut(s) 517
EarI CTCTTC 3 cut(s) 219, 315, 714
Ecl136II GAGCTC 1 cut(s) 926
Eco24I GRGCYC 1 cut(s) 928
Eco53kI GAGCTC 1 cut(s) 926
Eco57I CTGAAG 1 cut(s) 117
Eco88I CYCGRG 1 cut(s) 921
EcoICRI GAGCTC 1 cut(s) 926
EcoRII CCWGG 2 cut(s) 9, 840
EcoT22I ATGCAT 2 cut(s) 226, 267
EcoT38I GRGCYC 1 cut(s) 928
FaeI CATG 7 cut(s) 72, 132, 228, 269, 286, 830, 940
FalI AAGNNNNNCTT 2 cut(s) 859, 891
FatI CATG 7 cut(s) 68, 128, 224, 265, 282, 826, 936
FblI GTMKAC 1 cut(s) 689
Fnu4HI GCNGC 1 cut(s) 916
FokI GGATG 1 cut(s) 151
FriOI GRGCYC 1 cut(s) 928
Fsp4HI GCNGC 1 cut(s) 916
FspBI CTAG 3 cut(s) 51, 173, 233
GlaI GCGC 1 cut(s) 346
GluI GCNGC 1 cut(s) 916
GsaI CCCAGC 1 cut(s) 592
HaeII RGCGCY 1 cut(s) 348
HhaI GCGC 1 cut(s) 347
Hin1II CATG 7 cut(s) 72, 132, 228, 269, 286, 830, 940
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HincII GTYRAC 1 cut(s) 459
HindII GTYRAC 1 cut(s) 459
HinfI GANTC 3 cut(s) 512, 704, 853
Hpy166II GTNNAC 2 cut(s) 459, 690
Hpy188I TCNGA 4 cut(s) 65, 486, 753, 778
Hpy188III TCNNGA 6 cut(s) 25, 95, 173, 278, 472, 857
Hpy8I GTNNAC 2 cut(s) 459, 690
HpyAV CCTTC 1 cut(s) 242
HpyCH4III ACNGT 2 cut(s) 83, 242
HpyCH4V TGCA 7 cut(s) 224, 257, 265, 341, 742, 826, 918
HpyF10VI GCNNNNNNNGC 1 cut(s) 368
HpyF3I CTNAG 3 cut(s) 309, 470, 752
Hsp92II CATG 7 cut(s) 72, 132, 228, 269, 286, 830, 940
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 5 cut(s) 169, 304, 538, 556, 781
Lsp1109I GCAGC 1 cut(s) 902
LweI GCATC 1 cut(s) 729
MabI ACCWGGT 1 cut(s) 9
MaeI CTAG 3 cut(s) 51, 173, 233
MaeIII GTNAC 3 cut(s) 35, 278, 615
MalI GATC 5 cut(s) 171, 306, 540, 558, 783
MboI GATC 5 cut(s) 169, 304, 538, 556, 781
MboII GAAGA 7 cut(s) 110, 188, 206, 248, 332, 394, 701
MfeI CAATTG 1 cut(s) 366
MflI RGATCY 2 cut(s) 538, 556
MhlI GDGCHC 1 cut(s) 928
MluCI AATT 9 cut(s) 29, 43, 366, 425, 610, 679, 763, 821, 902
MlyI GAGTC 2 cut(s) 506, 847
MnlI CCTC 5 cut(s) 30, 657, 811, 883, 944
Mph1103I ATGCAT 2 cut(s) 226, 267
MseI TTAA 2 cut(s) 650, 659
MslI CAYNNNNRTG 1 cut(s) 795
MspR9I CCNGG 2 cut(s) 11, 842
MunI CAATTG 1 cut(s) 366
MvaI CCWGG 2 cut(s) 11, 842
MwoI GCNNNNNNNGC 1 cut(s) 368
NdeII GATC 5 cut(s) 169, 304, 538, 556, 781
NlaIII CATG 7 cut(s) 72, 132, 228, 269, 286, 830, 940
NmuCI GTSAC 2 cut(s) 278, 615
NsiI ATGCAT 2 cut(s) 226, 267
NspI RCATGY 2 cut(s) 132, 228
PaeI GCATGC 1 cut(s) 132
PaeR7I CTCGAG 1 cut(s) 921
PfeI GAWTC 1 cut(s) 704
PkrI GCNGC 1 cut(s) 917
PleI GAGTC 2 cut(s) 506, 847
PpsI GAGTC 2 cut(s) 506, 847
Psp124BI GAGCTC 1 cut(s) 928
Psp6I CCWGG 2 cut(s) 9, 840
PspFI CCCAGC 1 cut(s) 588
PspGI CCWGG 2 cut(s) 9, 840
PspXI VCTCGAGB 1 cut(s) 921
PstNI CAGNNNCTG 1 cut(s) 347
PsuI RGATCY 2 cut(s) 538, 556
RsaI GTAC 4 cut(s) 80, 211, 772, 871
RsaNI GTAC 4 cut(s) 79, 210, 771, 870
RseI CAYNNNNRTG 1 cut(s) 795
SacI GAGCTC 1 cut(s) 928
SaqAI TTAA 2 cut(s) 650, 659
SatI GCNGC 1 cut(s) 916
Sau3AI GATC 5 cut(s) 169, 304, 538, 556, 781
SchI GAGTC 2 cut(s) 506, 847
ScrFI CCNGG 2 cut(s) 11, 842
SduI GDGCHC 1 cut(s) 928
SexAI ACCWGGT 1 cut(s) 9
SfaNI GCATC 1 cut(s) 729
Sfr274I CTCGAG 1 cut(s) 921
SlaI CTCGAG 1 cut(s) 921
SmiMI CAYNNNNRTG 1 cut(s) 795
SmlI CTYRAG 1 cut(s) 921
SmoI CTYRAG 1 cut(s) 921
SphI GCATGC 1 cut(s) 132
Sse9I AATT 9 cut(s) 29, 43, 366, 425, 610, 679, 763, 821, 902
SspMI CTAG 3 cut(s) 51, 173, 233
SstI GAGCTC 1 cut(s) 928
StyD4I CCNGG 2 cut(s) 9, 840
TaaI ACNGT 2 cut(s) 83, 242
TaqI TCGA 4 cut(s) 389, 737, 784, 922
TasI AATT 9 cut(s) 29, 43, 366, 425, 610, 679, 763, 821, 902
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 1 cut(s) 704
Tru1I TTAA 2 cut(s) 650, 659
Tru9I TTAA 2 cut(s) 650, 659
TscAI CASTG 1 cut(s) 628
TseFI GTSAC 2 cut(s) 278, 615
TseI GCWGC 1 cut(s) 915
Tsp45I GTSAC 2 cut(s) 278, 615
TspDTI ATGAA 3 cut(s) 174, 710, 816
TspRI CASTG 1 cut(s) 628
XapI RAATTY 3 cut(s) 29, 679, 763
XbaI TCTAGA 1 cut(s) 172
XceI RCATGY 2 cut(s) 132, 228
XhoI CTCGAG 1 cut(s) 921
XmiI GTMKAC 1 cut(s) 689
XspI CTAG 3 cut(s) 51, 173, 233
Zsp2I ATGCAT 2 cut(s) 226, 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.