Prupe.3G080400_v2.0.a1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
Physical Location & Seq
Forward (+)
5961714 .. 5962160
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G080400.1

Sequence Viewer

Length: 447 bp
ATGTGTGAAGATATATTAGATGAATATGGTCATGTAGAGGAAGCCAAAAATGAGAGTTACCATATCATAGGAACTCTTCTTACCTCATGTTTGTTGGAAGATGAAGGAGATTCAGTAAAAATGCATGATGTAATTCGTGACATGGCATTGTGGTTAGCTTGTGACCTTGGGAAAGAAGGTGAGAACATCCTTGTGGATACAGGTGCTTATCATGCACCAAATGTTGCGAAATGGAACGCGAAAAGGGTTTCATTGATGGGTAGTGGTATCAAATCTCTAGATGAAACACCAACATCTCCCAATCTGTTGACCTTATTTCTCAGAGGAAGTTTTTTAAAGAGGATTGTGGATGACTTCTTTGATTTCATGCCTACGCTACGAGTTCTGGATTTGTCTGAAAATGTCCTTATAACTCAACTGCCAACTGGACACTACTACAAAAAGTGA

Protein Analysis

149

Amino Acids

16.68

Weight (kDa)

4.81

Isoelectric Point (pI)

55.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 410
AccII CGCG 1 cut(s) 239
AluBI AGCT 1 cut(s) 158
AluI AGCT 1 cut(s) 158
AsuHPI GGTGA 1 cut(s) 191
BccI CCATC 1 cut(s) 250
BciVI GTATCC 1 cut(s) 190
BfaI CTAG 1 cut(s) 278
BfuI GTATCC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 166
BsaXI ACNNNNNCTCC 2 cut(s) 99, 129
Bse1I ACTGG 1 cut(s) 430
BseDI CCNNGG 1 cut(s) 166
BseGI GGATG 2 cut(s) 186, 355
BseMII CTCAG 1 cut(s) 334
BseNI ACTGG 1 cut(s) 430
Bsh1236I CGCG 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 333
BspFNI CGCG 1 cut(s) 239
BsrI ACTGG 1 cut(s) 430
BssECI CCNNGG 1 cut(s) 166
BssT1I CCWWGG 1 cut(s) 166
Bst6I CTCTTC 1 cut(s) 81
BstDEI CTNAG 1 cut(s) 320
BstF5I GGATG 2 cut(s) 186, 355
BstFNI CGCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstUI CGCG 1 cut(s) 239
BsuI GTATCC 1 cut(s) 190
BtsCI GGATG 2 cut(s) 186, 355
CviAII CATG 6 cut(s) 32, 87, 125, 142, 212, 367
CviJI RGCY 2 cut(s) 44, 158
CviKI_1 RGCY 2 cut(s) 44, 158
DdeI CTNAG 1 cut(s) 320
DraI TTTAAA 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 166
EcoT14I CCWWGG 1 cut(s) 166
EcoT22I ATGCAT 1 cut(s) 126
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 6 cut(s) 35, 90, 128, 145, 215, 370
FatI CATG 6 cut(s) 31, 86, 124, 141, 211, 366
FokI GGATG 2 cut(s) 173, 362
FspBI CTAG 1 cut(s) 278
Hin1II CATG 6 cut(s) 35, 90, 128, 145, 215, 370
HincII GTYRAC 1 cut(s) 309
HindII GTYRAC 1 cut(s) 309
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 309
Hpy188I TCNGA 2 cut(s) 323, 397
Hpy188III TCNNGA 3 cut(s) 137, 278, 386
Hpy8I GTNNAC 1 cut(s) 309
HpyAV CCTTC 2 cut(s) 98, 170
HpyCH4V TGCA 2 cut(s) 124, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 1 cut(s) 320
Hsp92II CATG 6 cut(s) 35, 90, 128, 145, 215, 370
LpnPI CCDG 3 cut(s) 186, 371, 411
MaeI CTAG 1 cut(s) 278
MaeIII GTNAC 3 cut(s) 56, 137, 161
MboII GAAGA 3 cut(s) 20, 68, 110
MluCI AATT 1 cut(s) 132
MmeI TCCRAC 1 cut(s) 75
MnlI CCTC 4 cut(s) 31, 94, 317, 333
Mph1103I ATGCAT 1 cut(s) 126
MseI TTAA 1 cut(s) 335
MslI CAYNNNNRTG 1 cut(s) 191
MvnI CGCG 1 cut(s) 239
MwoI GCNNNNNNNGC 1 cut(s) 212
NlaIII CATG 6 cut(s) 35, 90, 128, 145, 215, 370
NmuCI GTSAC 2 cut(s) 137, 161
NsiI ATGCAT 1 cut(s) 126
PfeI GAWTC 1 cut(s) 110
PsiI TTATAA 1 cut(s) 410
PsrI GAACNNNNNNTAC 2 cut(s) 64, 96
RseI CAYNNNNRTG 1 cut(s) 191
SaqAI TTAA 1 cut(s) 335
SetI ASST 6 cut(s) 86, 160, 168, 181, 205, 314
SmiMI CAYNNNNRTG 1 cut(s) 191
Sse9I AATT 1 cut(s) 132
SspMI CTAG 1 cut(s) 278
StyI CCWWGG 1 cut(s) 166
TasI AATT 1 cut(s) 132
TfiI GAWTC 1 cut(s) 110
Tru1I TTAA 1 cut(s) 335
Tru9I TTAA 1 cut(s) 335
TseFI GTSAC 2 cut(s) 137, 161
Tsp45I GTSAC 2 cut(s) 137, 161
TspDTI ATGAA 5 cut(s) 36, 117, 240, 297, 355
XbaI TCTAGA 1 cut(s) 277
XspI CTAG 1 cut(s) 278
Zsp2I ATGCAT 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.