Rorug02G0271700

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
Physical Location & Seq
Reverse (-)
28887311 .. 28889630
2320 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0271700.1

Sequence Viewer

Length: 609 bp
ATGTTTTACACTTCAGTCTTTGTTGGTTTCATTGCTGACCATAGTTATTGCTTCATATATGGTTCTCTTTGTGTTCTCATTTCTCCCTATTATATGGGCACCATAGTTCTTGCTTTATATGCTAGGAGTTGTTATCCAGCTAAAGATCTCTGTAGGCACACTGGTACTCATCTATTCAAAGTGTTAAGATTCCTTCCAGAGTATGGGGGTGTAATACCAAATGGATTAGAAGGGGGCACATTTCAGATGCCAGAAATGGATGGATTTGAGGCAACAAGGGAGATAAGGAAAGTGGAGAAAACTCACCATGTCCACATTCCGATCATTGCATTAACAGCTCATACACCAGGTGAGGAAACAAGAAGGATGTTGGAGGCCGGCATGGATGACTATTTGAGCAAACCCTTGGAAAAGGGTCGTCTACTTGAAACAATGGGTAGACTGGTTGAGGCTGTGAAGTGTAAAAGTGAGCGGCTCAAGTCCAGTAGGCTCAAAGAGATCATTTTGAAAAAGATGTTGGAACTGGAGGACAAGCTGTTGGATGCTCCACCCGACACACTAGGTGTTGTTGCCTTAGCACTACACTATGCAAGTATGACAGAACTTTAG

Protein Analysis

202

Amino Acids

22.79

Weight (kDa)

6.71

Isoelectric Point (pI)

39.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Response_reg PF00072 82 - 144 2.8e-13 Response regulator receiver domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 98
AccB7I CCANNNNNTGG 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 472
AccI GTMKAC 2 cut(s) 421, 439
AciI CCGC 1 cut(s) 472
AdeI CACNNNGTG 2 cut(s) 350, 563
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 203
AgsI TTSAA 3 cut(s) 178, 428, 508
AjnI CCWGG 1 cut(s) 346
AjuI GAANNNNNNNTTGG 2 cut(s) 500, 532
AluBI AGCT 3 cut(s) 140, 338, 535
AluI AGCT 3 cut(s) 140, 338, 535
AoxI GGCC 1 cut(s) 375
AsuHPI GGTGA 2 cut(s) 296, 362
BaeGI GKGCMC 2 cut(s) 101, 239
BanI GGYRCC 1 cut(s) 98
BccI CCATC 1 cut(s) 254
BciT130I CCWGG 1 cut(s) 348
BfaI CTAG 2 cut(s) 123, 560
BfmI CTRYAG 1 cut(s) 151
BglII AGATCT 1 cut(s) 145
BisI GCNGC 1 cut(s) 473
BlsI GCNGC 1 cut(s) 474
Bme1390I CCNGG 1 cut(s) 348
BmiI GGNNCC 1 cut(s) 100
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 2 cut(s) 237, 532
BpmI CTGGAG 1 cut(s) 545
Bpu10I CCTNAGC 1 cut(s) 574
BpuEI CTTGAG 1 cut(s) 461
BsaJI CCNNGG 1 cut(s) 405
Bsc4I CCNNNNNNNGG 1 cut(s) 203
Bse118I RCCGGY 1 cut(s) 377
Bse1I ACTGG 4 cut(s) 166, 447, 483, 528
Bse3DI GCAATG 2 cut(s) 30, 324
BseBI CCWGG 1 cut(s) 348
BseDI CCNNGG 1 cut(s) 405
BseGI GGATG 4 cut(s) 265, 372, 391, 547
BseLI CCNNNNNNNGG 1 cut(s) 203
BseMI GCAATG 2 cut(s) 30, 324
BseNI ACTGG 4 cut(s) 166, 447, 483, 528
BseSI GKGCMC 2 cut(s) 101, 239
BshFI GGCC 1 cut(s) 377
BshNI GGYRCC 1 cut(s) 98
BsiSI CCGG 1 cut(s) 378
BslI CCNNNNNNNGG 1 cut(s) 203
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 101, 239
Bsp143I GATC 3 cut(s) 145, 321, 498
BspACI CCGC 1 cut(s) 472
BspANI GGCC 1 cut(s) 377
BspLI GGNNCC 1 cut(s) 100
BspT107I GGYRCC 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 2 cut(s) 30, 324
BsrFI RCCGGY 1 cut(s) 377
BsrI ACTGG 4 cut(s) 166, 447, 483, 528
BssAI RCCGGY 1 cut(s) 377
BssECI CCNNGG 1 cut(s) 405
BssMI GATC 3 cut(s) 145, 321, 498
BssT1I CCWWGG 1 cut(s) 405
Bst2UI CCWGG 1 cut(s) 348
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 1 cut(s) 574
BstF5I GGATG 4 cut(s) 265, 372, 391, 547
BstKTI GATC 3 cut(s) 148, 324, 501
BstMBI GATC 3 cut(s) 145, 321, 498
BstMWI GCNNNNNNNGC 2 cut(s) 119, 335
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstSFI CTRYAG 1 cut(s) 151
BstSLI GKGCMC 2 cut(s) 101, 239
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 4 cut(s) 265, 372, 391, 547
BtsIMutI CAGTG 1 cut(s) 159
Cac8I GCNNGC 1 cut(s) 379
Cfr10I RCCGGY 1 cut(s) 377
CsiI ACCWGGT 1 cut(s) 346
Csp6I GTAC 1 cut(s) 165
CviAII CATG 2 cut(s) 308, 382
CviJI RGCY 7 cut(s) 140, 338, 377, 452, 475, 490, 535
CviKI_1 RGCY 7 cut(s) 140, 338, 377, 452, 475, 490, 535
CviQI GTAC 1 cut(s) 165
DdeI CTNAG 1 cut(s) 574
DpnI GATC 3 cut(s) 147, 323, 500
DpnII GATC 3 cut(s) 145, 321, 498
DraIII CACNNNGTG 2 cut(s) 350, 563
Eco130I CCWWGG 1 cut(s) 405
EcoRII CCWGG 1 cut(s) 346
EcoT14I CCWWGG 1 cut(s) 405
ErhI CCWWGG 1 cut(s) 405
FaeI CATG 2 cut(s) 311, 385
FatI CATG 2 cut(s) 307, 381
FblI GTMKAC 2 cut(s) 421, 439
Fnu4HI GCNGC 1 cut(s) 473
FokI GGATG 4 cut(s) 272, 379, 398, 554
Fsp4HI GCNGC 1 cut(s) 473
FspBI CTAG 2 cut(s) 123, 560
GluI GCNGC 1 cut(s) 473
GsuI CTGGAG 1 cut(s) 545
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 378
Hin1II CATG 2 cut(s) 311, 385
HinfI GANTC 1 cut(s) 189
HpaII CCGG 1 cut(s) 378
HphI GGTGA 2 cut(s) 296, 362
Hpy166II GTNNAC 3 cut(s) 313, 422, 440
Hpy188I TCNGA 2 cut(s) 246, 321
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 3 cut(s) 313, 422, 440
HpyAV CCTTC 3 cut(s) 203, 224, 357
HpyCH4V TGCA 2 cut(s) 329, 590
HpyF10VI GCNNNNNNNGC 2 cut(s) 119, 335
HpyF3I CTNAG 1 cut(s) 574
Hsp92II CATG 2 cut(s) 311, 385
KroI GCCGGC 1 cut(s) 377
KroNI GCCGGC 1 cut(s) 379
Kzo9I GATC 3 cut(s) 145, 321, 498
LmnI GCTCC 1 cut(s) 550
LweI GCATC 2 cut(s) 237, 532
MabI ACCWGGT 1 cut(s) 346
MaeI CTAG 2 cut(s) 123, 560
MalI GATC 3 cut(s) 147, 323, 500
MbiI CCGCTC 1 cut(s) 472
MboI GATC 3 cut(s) 145, 321, 498
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 2 cut(s) 101, 239
MmeI TCCRAC 3 cut(s) 351, 498, 519
MnlI CCTC 5 cut(s) 262, 346, 367, 442, 520
MroNI GCCGGC 1 cut(s) 377
MseI TTAA 2 cut(s) 185, 332
MspI CCGG 1 cut(s) 378
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MwoI GCNNNNNNNGC 2 cut(s) 119, 335
NaeI GCCGGC 1 cut(s) 379
NdeII GATC 3 cut(s) 145, 321, 498
NgoMIV GCCGGC 1 cut(s) 377
NlaIII CATG 2 cut(s) 311, 385
NlaIV GGNNCC 1 cut(s) 100
PdiI GCCGGC 1 cut(s) 379
PfeI GAWTC 1 cut(s) 189
PflMI CCANNNNNTGG 1 cut(s) 203
PkrI GCNGC 1 cut(s) 474
Psp6I CCWGG 1 cut(s) 346
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 100
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SaqAI TTAA 2 cut(s) 185, 332
SatI GCNGC 1 cut(s) 473
Sau3AI GATC 3 cut(s) 145, 321, 498
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 2 cut(s) 101, 239
SetI ASST 5 cut(s) 142, 340, 352, 537, 565
SexAI ACCWGGT 1 cut(s) 346
SfaNI GCATC 2 cut(s) 237, 532
SfcI CTRYAG 1 cut(s) 151
SmlI CTYRAG 1 cut(s) 476
SmoI CTYRAG 1 cut(s) 476
SsiI CCGC 1 cut(s) 472
SspMI CTAG 2 cut(s) 123, 560
StyD4I CCNGG 1 cut(s) 346
StyI CCWWGG 1 cut(s) 405
TauI GCSGC 1 cut(s) 475
TfiI GAWTC 1 cut(s) 189
Tru1I TTAA 2 cut(s) 185, 332
Tru9I TTAA 2 cut(s) 185, 332
TscAI CASTG 1 cut(s) 166
TspDTI ATGAA 2 cut(s) 19, 43
TspRI CASTG 1 cut(s) 166
Van91I CCANNNNNTGG 1 cut(s) 203
XmiI GTMKAC 2 cut(s) 421, 439
XspI CTAG 2 cut(s) 123, 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.