RLG00000021748

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000363
Physical Location & Seq
Reverse (-)
77925556 .. 77926173
618 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021748

Sequence Viewer

Length: 618 bp
ATGGGTTATGACAGTCATTTGAGCTCTCTTGATATATCATCCGTGGAGACAAAACATCTTGAGCAACTTAACATTAGGGGTTATCCTAATGTGGAAGATATAATAGTTGACAATGATTGGGCAGGAGGACGAGCATATAACAATCCTCAGAACTCAATGATGAGAATCCAGAGCTGCTTCCTTGGCCTTCAATACATAATGGTGCAAGACTGTGTAAATCTCAAGGACTTGACACAGCTCTGTTTTGTTCCAAATCTCCTATCTGTTGACGTGAGGAGATGCTCTAGAATGGAGACAATAATCAATTTGAGTAAACTGGTTGGAGATGCAAATGTGGCAAAAGAATTTAACCTGTTTGCGAAACTGATGTATCTTCATTTCGAACAGCTACCAGCGTTGGAGAGCGTCTACAAAACTGCCTTGCCCTTTCCATGTCTAAAGTGGTTCCACGTATATCACTGTCCAGCACTGAAGAAACTGCCACTCAACTCTAGCACTGCTCAAGGAGACGGATGCAATTTCATCCTAAGAGGAAAGCAGAAGTGGTGGGATGGGTTAGAGTGGGAGGACCAACTTGCACTAGATACTATTCGTCCCTGCTACATGCGTTGGGAGTGA

Protein Analysis

206

Amino Acids

23.69

Weight (kDa)

5.96

Isoelectric Point (pI)

40.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 56 - 160 4.4e-10 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 408
AcsI RAATTY 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 491
AgsI TTSAA 1 cut(s) 191
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 4 cut(s) 24, 174, 238, 388
AluI AGCT 4 cut(s) 24, 174, 238, 388
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 3 cut(s) 41, 287, 501
AoxI GGCC 1 cut(s) 184
ApeKI GCWGC 1 cut(s) 174
ApoI RAATTY 1 cut(s) 344
AspS9I GGNCC 1 cut(s) 568
AsuII TTCGAA 1 cut(s) 381
AvaII GGWCC 1 cut(s) 568
BaeI ACNNNNGTAYC 2 cut(s) 353, 386
BanII GRGCYC 1 cut(s) 26
Bbv12I GWGCWC 1 cut(s) 26
BbvI GCAGC 1 cut(s) 161
BccI CCATC 1 cut(s) 545
BcoDI GTCTC 3 cut(s) 41, 287, 501
BfaI CTAG 3 cut(s) 285, 492, 581
BisI GCNGC 1 cut(s) 175
BlsI GCNGC 1 cut(s) 176
Bme18I GGWCC 1 cut(s) 568
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 568
BmiI GGNNCC 1 cut(s) 446
BmsI GCATC 3 cut(s) 269, 316, 503
Bpu14I TTCGAA 1 cut(s) 381
BpuEI CTTGAG 3 cut(s) 80, 206, 486
BsaAI YACGTR 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 164
BsaJI CCNNGG 2 cut(s) 42, 181
Bse1I ACTGG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 164
BseDI CCNNGG 2 cut(s) 42, 181
BseGI GGATG 4 cut(s) 38, 518, 522, 556
BseJI GATNNNNATC 1 cut(s) 164
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 1 cut(s) 321
BseRI GAGGAG 1 cut(s) 289
BseXI GCAGC 1 cut(s) 161
BshFI GGCC 1 cut(s) 186
BsiHKAI GWGCWC 1 cut(s) 26
BslFI GGGAC 1 cut(s) 579
BsmAI GTCTC 3 cut(s) 41, 287, 501
BsmBI CGTCTC 1 cut(s) 501
BsmFI GGGAC 1 cut(s) 579
BsnI GGCC 1 cut(s) 186
Bsp119I TTCGAA 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 26
BspANI GGCC 1 cut(s) 186
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 446
BspT104I TTCGAA 1 cut(s) 381
BsrI ACTGG 1 cut(s) 321
BssECI CCNNGG 2 cut(s) 42, 181
BssT1I CCWWGG 1 cut(s) 181
Bst4CI ACNGT 3 cut(s) 14, 212, 461
BstBAI YACGTR 1 cut(s) 451
BstBI TTCGAA 1 cut(s) 381
BstDEI CTNAG 2 cut(s) 147, 527
BstDSI CCRYGG 1 cut(s) 42
BstF5I GGATG 4 cut(s) 38, 518, 522, 556
BstMAI GTCTC 3 cut(s) 41, 287, 501
BstMWI GCNNNNNNNGC 2 cut(s) 183, 335
BstNSI RCATGY 1 cut(s) 607
BstV1I GCAGC 1 cut(s) 161
BsuRI GGCC 1 cut(s) 186
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 271
BtsCI GGATG 4 cut(s) 38, 518, 522, 556
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 3 cut(s) 457, 467, 495
Cfr13I GGNCC 1 cut(s) 568
CseI GACGC 1 cut(s) 394
CviAII CATG 2 cut(s) 432, 604
CviJI RGCY 5 cut(s) 24, 174, 186, 238, 388
CviKI_1 RGCY 5 cut(s) 24, 174, 186, 238, 388
DdeI CTNAG 2 cut(s) 147, 527
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 568
Eco53kI GAGCTC 1 cut(s) 24
Eco57I CTGAAG 1 cut(s) 491
EcoICRI GAGCTC 1 cut(s) 24
EcoT14I CCWWGG 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 181
Esp3I CGTCTC 1 cut(s) 501
FaeI CATG 2 cut(s) 435, 607
FaiI YATR 9 cut(s) 9, 35, 101, 136, 138, 197, 433, 454, 605
FaqI GGGAC 1 cut(s) 579
FatI CATG 2 cut(s) 431, 603
FblI GTMKAC 1 cut(s) 408
Fnu4HI GCNGC 1 cut(s) 175
FokI GGATG 4 cut(s) 25, 509, 525, 563
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 1 cut(s) 175
FspBI CTAG 3 cut(s) 285, 492, 581
GluI GCNGC 1 cut(s) 175
HaeIII GGCC 1 cut(s) 186
HgaI GACGC 1 cut(s) 394
Hin1II CATG 2 cut(s) 435, 607
HincII GTYRAC 2 cut(s) 109, 268
HindII GTYRAC 2 cut(s) 109, 268
HinfI GANTC 1 cut(s) 165
Hpy166II GTNNAC 4 cut(s) 109, 268, 314, 409
Hpy188I TCNGA 1 cut(s) 150
Hpy188III TCNNGA 4 cut(s) 29, 59, 169, 285
Hpy8I GTNNAC 4 cut(s) 109, 268, 314, 409
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 3 cut(s) 14, 212, 461
HpyCH4IV ACGT 2 cut(s) 270, 450
HpyCH4V TGCA 4 cut(s) 205, 329, 516, 578
HpyF10VI GCNNNNNNNGC 2 cut(s) 183, 335
HpyF3I CTNAG 2 cut(s) 147, 527
HpySE526I ACGT 2 cut(s) 270, 450
Hsp92II CATG 2 cut(s) 435, 607
LpnPI CCDG 7 cut(s) 108, 182, 302, 365, 405, 477, 610
Lsp1109I GCAGC 1 cut(s) 161
LweI GCATC 3 cut(s) 269, 316, 503
MaeI CTAG 3 cut(s) 285, 492, 581
MaeII ACGT 2 cut(s) 270, 450
MboII GAAGA 3 cut(s) 107, 365, 484
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 3 cut(s) 304, 344, 517
MmeI TCCRAC 2 cut(s) 301, 378
MnlI CCTC 5 cut(s) 119, 156, 267, 524, 559
MseI TTAA 2 cut(s) 69, 348
MslI CAYNNNNRTG 1 cut(s) 200
MwoI GCNNNNNNNGC 2 cut(s) 183, 335
NlaIII CATG 2 cut(s) 435, 607
NlaIV GGNNCC 1 cut(s) 446
NspI RCATGY 1 cut(s) 607
NspV TTCGAA 1 cut(s) 381
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 1 cut(s) 176
Ppu21I YACGTR 1 cut(s) 451
Psp124BI GAGCTC 1 cut(s) 26
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 568
RseI CAYNNNNRTG 1 cut(s) 200
SacI GAGCTC 1 cut(s) 26
SaqAI TTAA 2 cut(s) 69, 348
SatI GCNGC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 568
SduI GDGCHC 1 cut(s) 26
SetI ASST 7 cut(s) 26, 176, 240, 273, 354, 390, 453
SfaNI GCATC 3 cut(s) 269, 316, 503
SfuI TTCGAA 1 cut(s) 381
SinI GGWCC 1 cut(s) 568
SmiMI CAYNNNNRTG 1 cut(s) 200
SmlI CTYRAG 3 cut(s) 59, 221, 501
SmoI CTYRAG 3 cut(s) 59, 221, 501
Sse9I AATT 3 cut(s) 304, 344, 517
SspMI CTAG 3 cut(s) 285, 492, 581
SstI GAGCTC 1 cut(s) 26
StyI CCWWGG 1 cut(s) 181
TaaI ACNGT 3 cut(s) 14, 212, 461
TaiI ACGT 2 cut(s) 273, 453
TaqI TCGA 1 cut(s) 381
TasI AATT 3 cut(s) 304, 344, 517
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 69, 348
Tru9I TTAA 2 cut(s) 69, 348
TscAI CASTG 3 cut(s) 464, 474, 502
TseI GCWGC 1 cut(s) 174
TspDTI ATGAA 2 cut(s) 365, 511
TspGWI ACGGA 2 cut(s) 31, 525
TspRI CASTG 3 cut(s) 464, 474, 502
VpaK11BI GGWCC 1 cut(s) 568
XapI RAATTY 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 1 cut(s) 607
XcmI CCANNNNNNNNNTGG 1 cut(s) 438
XmiI GTMKAC 1 cut(s) 408
XspI CTAG 3 cut(s) 285, 492, 581
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.