RchiOBHm_Chr2g0136891

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000363
Physical Location & Seq
Forward (+)
54242684 .. 54244970
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50767

Sequence Viewer

Length: 2070 bp
ATGGCTGGCATCTTGTCAATCAATTTGTCGTCCGATGCCTTCGTTTATCGCTGCTGGGATTCCCTCGTTGGAAGACAACATTATGTCAGCAAGCTCCAGAAAAACCTTGTAGGTTTGACTACGTCTTTAGAAGAACTGAAGTGTTTAAAGAATGATGTAAAGAGAAAGGTTGAGGTTTCTGAGCAGCAGCCACACATGAAGCGGCTAGAACAGGTACAGATCTGGATTGTGAAAGTGGAAACTATGGAGACTCAAGTCCACGAAGTTCTCAATGCTAGAATTCAAGAAACTGAGAAACTGTGCTGTGGAGGTTGCTGTTCAAAGAACTATATTTCCAGCTACAGGTATGGGAAAAAGGTGGTCAAGAAGTTGCTAGAAATCACTGCTTTAAAGGAGGCCGGAGTTTTTCAAGAGGTAGCCGAGAGGTTACCTGCGCCATTAGTCAGTCAAAGACCTATTGAGCCAATTGTGGGCATGGAATCCATGTTTGATAAGGTTTGGAGCCACATCGAAGATGAAGAGGTGGGAGTGATTGGCTTGTATGGAATGGGAGGGGTGGGGAAGACCACCCTTCTTACCAACATCAATAACAACTTCCTCCACAGCACTAATGATTTCAATCTTGTGATCTGGATCGTGGTCTCCAAGGACTTCAAGCTTGACAACATTCAAAACAAGATTGGTGAGAAGATTGGGTTTTCGGATGAGACATGGAAGCGTCAAGGGCAGGATGAGAAAGCTGAGGACATCTCCATGATCCTAGGCACAAAGAAGTTCGTCTTGTTCTTGGATGACCTGTGGGAGCGAGTTGAAATCACCAAAATTGGAGTTCCATTTCCTGATAAACACAACAAGTGCAAAGTACTCTTCACCACGCGTTCTGAGGACGTTTGCGGTCTTATGGATGCTCATGTGAAGATTAAAGTGGAGTGTTTGGCATCGGAAAAGGCATGGACCTTGTTTCAACAGAAAGTTGGAAAAGAAGCTCTTCTAGTTCATCAAGATATCCCTAGACTAGCTGAGATTGTGGCAAAAGAGTGTGGCGGCTTGCCACTTGCATTAATTACGGTTGGTCGGGCCATGGCTTGCAAGAAGACACCTGAAGAATGGGATCATGCAATTCAAGTTCTCAAGAAATCCGCATCAGAGTTCTCTGGTATGGAAGATAAGGTGCTCCGTCTTTTGAAATTCAGTTATGATAGTTTACCATCAGAGAAAGTTAGATCATGCTTCTTATATTGTGCTTTATTTCCAGAAGATTTTCTAATACCTAAAGATACTTTATTAAACTGTTGGATGGCTGAGGAAATGTGGGATGAACATGCTAATGTACATGAAGGACGAAGTGAAAGTTACCATATTATAGGTGTTCTTCTTAATGTATGTTTGTTGGAAGAATATAAAGGAAACTTTGTGAAAATGCATGATGTCATCCGCGACATGGCGTTGTGGTTGGCTTGTGATCCTGCTAAAACAAACGAGGGTTTCCTATTGCATGCAGGTGCAGATTTGATTGAAGCACCCAATGTTGGAAAATGGAAGAGCATGAAAAGAATATCTTTGATGTCTAATCGCATGGAGCATCTAGATGAAACACCGAATTCTCCTAGTTTGTTGACCTTGTTTCTTGGAGGAAATAATTTGAAGAAGATTGATGATGGCTTTTTCGATCACATGCCTAGTTTAAAAGTTTTGGATTTGTCAGACAATAAGGATCTAACGCGGTTGCCATGTGGAGTTTCAAACCTTGTTTCATTGCAGCATCTGAATTTGTCAGAAACTGGTATAAAAGAGTTGTCAGAGGAGATAAAGAACTTATCAAAGCTAAAATATTTGAACTTGGAGTTTACGGGGCAACTTGATTCTGTTCCACCAAATTTTATATCAAGTTTTCCCATGCTGAAAGTTTTGAGAATGTTCAAATGTGGTTCTTCTGACAAAATTCTTTTTGAAGGTGAAATATCCATGATAGGGGAATTGCAGGGTTTGAAACACTTTGAAGTGTTGACTTTGAGCATTCGAAGTACAGCTTGCTTTTGCAAGTTTCTCCAGTACCACAGGAGCAACTAA

Protein Analysis

689

Amino Acids

78.17

Weight (kDa)

6.22

Isoelectric Point (pI)

43.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 160 - 328 1.1e-50 NB-ARC domain
WHD_DRP PF23559 416 - 482 1.1e-06 Disease resistance protein Winged helix domain
LRR_8 PF13855 536 - 594 4.3e-11 Leucine rich repeat
LRR_14 PF23598 548 - 674 4.8e-11 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1490
Acc36I ACCTGC 2 cut(s) 439, 1490
AccII CGCG 3 cut(s) 877, 1437, 1723
AciI CCGC 6 cut(s) 202, 894, 1044, 1140, 1435, 1723
AclWI GGATC 5 cut(s) 641, 751, 1119, 1457, 1722
AcsI RAATTY 6 cut(s) 279, 1187, 1600, 1768, 1876, 1941
AcuI CTGAAG 2 cut(s) 158, 1122
AfaI GTAC 5 cut(s) 216, 864, 1332, 2026, 2054
AfiI CCNNNNNNNGG 5 cut(s) 342, 470, 1441, 1529, 1971
AflIII ACRYGT 1 cut(s) 875
AloI GAACNNNNNNTCC 2 cut(s) 317, 349
AluBI AGCT 8 cut(s) 94, 339, 658, 740, 986, 1019, 1825, 2030
AluI AGCT 8 cut(s) 94, 339, 658, 740, 986, 1019, 1825, 2030
Alw21I GWGCWC 1 cut(s) 1176
Alw26I GTCTC 3 cut(s) 242, 646, 701
AlwI GGATC 5 cut(s) 641, 751, 1119, 1457, 1722
AlwNI CAGNNNCTG 2 cut(s) 1765, 1781
AoxI GGCC 2 cut(s) 396, 1077
ApeKI GCWGC 4 cut(s) 51, 184, 187, 1759
ApoI RAATTY 6 cut(s) 279, 1187, 1600, 1768, 1876, 1941
AseI ATTAAT 1 cut(s) 1061
Asp700I GAANNNNTTC 2 cut(s) 987, 1260
AspA2I CCTAGG 1 cut(s) 760
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 2 cut(s) 954, 1077
AsuHPI GGTGA 4 cut(s) 695, 808, 862, 1967
AsuII TTCGAA 1 cut(s) 2020
AvaII GGWCC 1 cut(s) 954
AvrII CCTAGG 1 cut(s) 760
BbsI GAAGAC 3 cut(s) 79, 569, 1100
Bbv12I GWGCWC 1 cut(s) 1176
BbvCI CCTCAGC 2 cut(s) 741, 1302
BbvI GCAGC 4 cut(s) 38, 196, 199, 1771
BccI CCATC 3 cut(s) 1216, 1291, 1652
BcoDI GTCTC 3 cut(s) 242, 646, 701
BfmI CTRYAG 1 cut(s) 340
BfuAI ACCTGC 2 cut(s) 439, 1490
BglII AGATCT 1 cut(s) 219
BisI GCNGC 6 cut(s) 52, 185, 188, 203, 1045, 1760
BlnI CCTAGG 1 cut(s) 760
BlsI GCNGC 6 cut(s) 53, 186, 189, 204, 1046, 1761
BmcAI AGTACT 1 cut(s) 864
Bme18I GGWCC 1 cut(s) 954
BmgT120I GGNCC 2 cut(s) 954, 1077
BmiI GGNNCC 1 cut(s) 503
BmsI GCATC 7 cut(s) 18, 25, 895, 947, 1151, 1591, 1771
BoxI GACNNNNGTC 1 cut(s) 254
BpiI GAAGAC 3 cut(s) 79, 569, 1100
BplI GAGNNNNNCTC 2 cut(s) 734, 766
BpmI CTGGAG 2 cut(s) 80, 2033
Bpu10I CCTNAGC 2 cut(s) 741, 1302
Bpu14I TTCGAA 1 cut(s) 2020
BpuEI CTTGAG 2 cut(s) 237, 1115
BsaBI GATNNNNATC 2 cut(s) 618, 632
BsaI GGTCTC 1 cut(s) 646
BsaJI CCNNGG 3 cut(s) 645, 760, 1080
Bsc4I CCNNNNNNNGG 5 cut(s) 342, 470, 1441, 1529, 1971
Bse1I ACTGG 2 cut(s) 1786, 2050
Bse3DI GCAATG 1 cut(s) 1754
Bse8I GATNNNNATC 2 cut(s) 618, 632
BseDI CCNNGG 3 cut(s) 645, 760, 1080
BseGI GGATG 7 cut(s) 709, 736, 796, 910, 1302, 1321, 1431
BseJI GATNNNNATC 2 cut(s) 618, 632
BseLI CCNNNNNNNGG 5 cut(s) 342, 470, 1441, 1529, 1971
BseMI GCAATG 1 cut(s) 1754
BseMII CTCAG 6 cut(s) 171, 282, 732, 873, 1011, 1293
BseNI ACTGG 2 cut(s) 1786, 2050
BseRI GAGGAG 1 cut(s) 1817
BseXI GCAGC 4 cut(s) 38, 196, 199, 1771
BseYI CCCAGC 1 cut(s) 54
BsgI GTGCAG 1 cut(s) 1524
Bsh1236I CGCG 3 cut(s) 877, 1437, 1723
BshFI GGCC 2 cut(s) 398, 1079
BsiHKAI GWGCWC 1 cut(s) 1176
BsiSI CCGG 1 cut(s) 399
BslI CCNNNNNNNGG 5 cut(s) 342, 470, 1441, 1529, 1971
BsmAI GTCTC 3 cut(s) 242, 646, 701
BsmI GAATGC 1 cut(s) 2016
BsnI GGCC 2 cut(s) 398, 1079
Bso31I GGTCTC 1 cut(s) 646
Bsp119I TTCGAA 1 cut(s) 2020
Bsp1286I GDGCHC 1 cut(s) 1176
Bsp1407I TGTACA 1 cut(s) 1330
Bsp143I GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
Bsp19I CCATGG 1 cut(s) 1080
BspACI CCGC 6 cut(s) 202, 894, 1044, 1140, 1435, 1723
BspANI GGCC 2 cut(s) 398, 1079
BspCNI CTCAG 6 cut(s) 172, 283, 733, 874, 1012, 1294
BspFNI CGCG 3 cut(s) 877, 1437, 1723
BspLI GGNNCC 1 cut(s) 503
BspMI ACCTGC 2 cut(s) 439, 1490
BspPI GGATC 5 cut(s) 641, 751, 1119, 1457, 1722
BspQI GCTCTTC 2 cut(s) 993, 1535
BspT104I TTCGAA 1 cut(s) 2020
BspTNI GGTCTC 1 cut(s) 646
BsrDI GCAATG 1 cut(s) 1754
BsrGI TGTACA 1 cut(s) 1330
BsrI ACTGG 2 cut(s) 1786, 2050
BssECI CCNNGG 3 cut(s) 645, 760, 1080
BssMI GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
BssT1I CCWWGG 3 cut(s) 645, 760, 1080
Bst4CI ACNGT 3 cut(s) 300, 1069, 1292
Bst6I CTCTTC 4 cut(s) 513, 872, 993, 1535
BstAUI TGTACA 1 cut(s) 1330
BstBI TTCGAA 1 cut(s) 2020
BstC8I GCNNGC 6 cut(s) 7, 92, 1049, 1087, 1497, 2032
BstDEI CTNAG 6 cut(s) 180, 291, 741, 882, 1020, 1302
BstDSI CCRYGG 1 cut(s) 1080
BstEII GGTNACC 1 cut(s) 426
BstF5I GGATG 7 cut(s) 709, 736, 796, 910, 1302, 1321, 1431
BstFNI CGCG 3 cut(s) 877, 1437, 1723
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 9 cut(s) 222, 630, 636, 759, 1114, 1226, 1465, 1672, 1717
BstMAI GTCTC 3 cut(s) 242, 646, 701
BstMBI GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
BstMWI GCNNNNNNNGC 1 cut(s) 724
BstNSI RCATGY 3 cut(s) 1325, 1499, 1678
BstPAI GACNNNNGTC 1 cut(s) 254
BstPI GGTNACC 1 cut(s) 426
BstSFI CTRYAG 1 cut(s) 340
BstUI CGCG 3 cut(s) 877, 1437, 1723
BstV1I GCAGC 4 cut(s) 38, 196, 199, 1771
BstV2I GAAGAC 3 cut(s) 79, 569, 1100
BstX2I RGATCY 2 cut(s) 219, 1714
BstYI RGATCY 2 cut(s) 219, 1714
BsuRI GGCC 2 cut(s) 398, 1079
BtgI CCRYGG 1 cut(s) 1080
BtsCI GGATG 7 cut(s) 709, 736, 796, 910, 1302, 1321, 1431
BtsI GCAGTG 1 cut(s) 381
BtsIMutI CAGTG 1 cut(s) 381
BveI ACCTGC 2 cut(s) 439, 1490
Cac8I GCNNGC 6 cut(s) 7, 92, 1049, 1087, 1497, 2032
CaiI CAGNNNCTG 2 cut(s) 1765, 1781
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 2 cut(s) 954, 1077
CseI GACGC 1 cut(s) 707
Csp6I GTAC 5 cut(s) 215, 863, 1331, 2025, 2053
CviQI GTAC 5 cut(s) 215, 863, 1331, 2025, 2053
DdeI CTNAG 6 cut(s) 180, 291, 741, 882, 1020, 1302
DpnI GATC 9 cut(s) 221, 629, 635, 758, 1113, 1225, 1464, 1671, 1716
DpnII GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
DraI TTTAAA 3 cut(s) 147, 390, 1686
Eam1104I CTCTTC 4 cut(s) 513, 872, 993, 1535
EarI CTCTTC 4 cut(s) 513, 872, 993, 1535
Eco130I CCWWGG 3 cut(s) 645, 760, 1080
Eco31I GGTCTC 1 cut(s) 646
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 1 cut(s) 954
Eco57I CTGAAG 2 cut(s) 158, 1122
Eco91I GGTNACC 1 cut(s) 426
EcoO65I GGTNACC 1 cut(s) 426
EcoRI GAATTC 2 cut(s) 279, 1600
EcoRV GATATC 1 cut(s) 1006
EcoT14I CCWWGG 3 cut(s) 645, 760, 1080
EcoT22I ATGCAT 1 cut(s) 1425
ErhI CCWWGG 3 cut(s) 645, 760, 1080
FalI AAGNNNNNCTT 8 cut(s) 764, 796, 972, 1004, 1543, 1575, 2014, 2046
Fnu4HI GCNGC 6 cut(s) 52, 185, 188, 203, 1045, 1760
FokI GGATG 7 cut(s) 716, 743, 803, 917, 1309, 1328, 1418
Fsp4HI GCNGC 6 cut(s) 52, 185, 188, 203, 1045, 1760
GlaI GCGC 1 cut(s) 435
GluI GCNGC 6 cut(s) 52, 185, 188, 203, 1045, 1760
GsaI CCCAGC 1 cut(s) 58
GsuI CTGGAG 2 cut(s) 80, 2033
HaeIII GGCC 2 cut(s) 398, 1079
HapII CCGG 1 cut(s) 399
HgaI GACGC 1 cut(s) 707
HhaI GCGC 1 cut(s) 436
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HincII GTYRAC 2 cut(s) 1617, 2007
HindII GTYRAC 2 cut(s) 1617, 2007
HindIII AAGCTT 1 cut(s) 656
HinfI GANTC 4 cut(s) 59, 250, 479, 1862
HpaII CCGG 1 cut(s) 399
HphI GGTGA 4 cut(s) 695, 808, 862, 1967
Hpy166II GTNNAC 5 cut(s) 259, 1205, 1617, 1848, 2007
Hpy8I GTNNAC 5 cut(s) 259, 1205, 1617, 1848, 2007
HpyAV CCTTC 4 cut(s) 49, 581, 1331, 1946
HpyCH4III ACNGT 3 cut(s) 300, 1069, 1292
HpyCH4IV ACGT 2 cut(s) 122, 888
HpyF10VI GCNNNNNNNGC 1 cut(s) 724
HpyF3I CTNAG 6 cut(s) 180, 291, 741, 882, 1020, 1302
HpySE526I ACGT 2 cut(s) 122, 888
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
LguI GCTCTTC 2 cut(s) 993, 1535
LmnI GCTCC 6 cut(s) 99, 501, 802, 1179, 1579, 2061
Lsp1109I GCAGC 4 cut(s) 38, 196, 199, 1771
LweI GCATC 7 cut(s) 18, 25, 895, 947, 1151, 1591, 1771
MaeII ACGT 2 cut(s) 122, 888
MaeIII GTNAC 2 cut(s) 426, 1352
MalI GATC 9 cut(s) 221, 629, 635, 758, 1113, 1225, 1464, 1671, 1716
MboI GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
MfeI CAATTG 1 cut(s) 465
MflI RGATCY 2 cut(s) 219, 1714
MhlI GDGCHC 1 cut(s) 1176
MluI ACGCGT 1 cut(s) 875
MlyI GAGTC 1 cut(s) 244
MmeI TCCRAC 5 cut(s) 49, 955, 1274, 1371, 1510
Mph1103I ATGCAT 1 cut(s) 1425
MroXI GAANNNNTTC 2 cut(s) 987, 1260
MseI TTAA 7 cut(s) 146, 389, 921, 1061, 1286, 1377, 1685
MslI CAYNNNNRTG 4 cut(s) 752, 1326, 1500, 1587
MspI CCGG 1 cut(s) 399
MunI CAATTG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 2016
MvnI CGCG 3 cut(s) 877, 1437, 1723
MwoI GCNNNNNNNGC 1 cut(s) 724
NcoI CCATGG 1 cut(s) 1080
NdeII GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
NlaIV GGNNCC 1 cut(s) 503
NmeAIII GCCGAG 1 cut(s) 445
NsiI ATGCAT 1 cut(s) 1425
NspI RCATGY 3 cut(s) 1325, 1499, 1678
NspV TTCGAA 1 cut(s) 2020
PaeI GCATGC 1 cut(s) 1499
PaqCI CACCTGC 1 cut(s) 1490
PciSI GCTCTTC 2 cut(s) 993, 1535
PctI GAATGC 1 cut(s) 2016
PdmI GAANNNNTTC 2 cut(s) 987, 1260
PfeI GAWTC 3 cut(s) 59, 479, 1862
PflFI GACNNNGTC 1 cut(s) 121
PkrI GCNGC 6 cut(s) 53, 186, 189, 204, 1046, 1761
PleI GAGTC 1 cut(s) 244
PpsI GAGTC 1 cut(s) 244
PshAI GACNNNNGTC 1 cut(s) 254
PshBI ATTAAT 1 cut(s) 1061
PspEI GGTNACC 1 cut(s) 426
PspFI CCCAGC 1 cut(s) 54
PspN4I GGNNCC 1 cut(s) 503
PspPI GGNCC 2 cut(s) 954, 1077
PstNI CAGNNNCTG 2 cut(s) 1765, 1781
PsuI RGATCY 2 cut(s) 219, 1714
PsyI GACNNNGTC 1 cut(s) 121
RsaI GTAC 5 cut(s) 216, 864, 1332, 2026, 2054
RsaNI GTAC 5 cut(s) 215, 863, 1331, 2025, 2053
RseI CAYNNNNRTG 4 cut(s) 752, 1326, 1500, 1587
SapI GCTCTTC 2 cut(s) 993, 1535
SaqAI TTAA 7 cut(s) 146, 389, 921, 1061, 1286, 1377, 1685
SatI GCNGC 6 cut(s) 52, 185, 188, 203, 1045, 1760
Sau3AI GATC 9 cut(s) 219, 627, 633, 756, 1111, 1223, 1462, 1669, 1714
Sau96I GGNCC 2 cut(s) 954, 1077
ScaI AGTACT 1 cut(s) 864
SchI GAGTC 1 cut(s) 244
SduI GDGCHC 1 cut(s) 1176
SfaNI GCATC 7 cut(s) 18, 25, 895, 947, 1151, 1591, 1771
SfcI CTRYAG 1 cut(s) 340
SfuI TTCGAA 1 cut(s) 2020
SinI GGWCC 1 cut(s) 954
SmiMI CAYNNNNRTG 4 cut(s) 752, 1326, 1500, 1587
SmlI CTYRAG 2 cut(s) 252, 1130
SmoI CTYRAG 2 cut(s) 252, 1130
SphI GCATGC 1 cut(s) 1499
SsiI CCGC 6 cut(s) 202, 894, 1044, 1140, 1435, 1723
SspI AATATT 1 cut(s) 1832
StyI CCWWGG 3 cut(s) 645, 760, 1080
TaaI ACNGT 3 cut(s) 300, 1069, 1292
TaiI ACGT 2 cut(s) 125, 891
TaqI TCGA 3 cut(s) 510, 1668, 2020
TatI WGTACW 3 cut(s) 862, 1330, 2024
TauI GCSGC 2 cut(s) 205, 1047
TfiI GAWTC 3 cut(s) 59, 479, 1862
Tru1I TTAA 7 cut(s) 146, 389, 921, 1061, 1286, 1377, 1685
Tru9I TTAA 7 cut(s) 146, 389, 921, 1061, 1286, 1377, 1685
TscAI CASTG 1 cut(s) 388
TseI GCWGC 4 cut(s) 51, 184, 187, 1759
TspDTI ATGAA 8 cut(s) 212, 531, 986, 1332, 1350, 1562, 1605, 1743
TspGWI ACGGA 1 cut(s) 1166
TspRI CASTG 1 cut(s) 388
Tth111I GACNNNGTC 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 954
VspI ATTAAT 1 cut(s) 1061
XapI RAATTY 6 cut(s) 279, 1187, 1600, 1768, 1876, 1941
XbaI TCTAGA 1 cut(s) 1585
XceI RCATGY 3 cut(s) 1325, 1499, 1678
XmaJI CCTAGG 1 cut(s) 760
XmnI GAANNNNTTC 2 cut(s) 987, 1260
ZrmI AGTACT 1 cut(s) 864
Zsp2I ATGCAT 1 cut(s) 1425
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.