RchiOBHm_Chr2g0136901

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000363
Physical Location & Seq
Forward (+)
54244972 .. 54245707
736 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50768

Sequence Viewer

Length: 465 bp
ATGACAAACCAAAGTTGCTACATTGCTCTTCAACACGTATCTGTAAGCTCTTGCTTCCAATTGAATGATATGACATGGCTTATTTTTGCTCAGAATCTCATCAGATTATATGTATATGGCTGCTCCGGAATGCGGGAAATAATCAGTTCTCAAAGATTGGGTGCACATGTTGTAAGAGACATGAAACCATTTGCAAAACTTTCAGTTCTTGATTTGTGGGGTCTTCCGCTCTTGAGTAGCATATATAGAAGTGCACTGCCATTTCCATATCTGAGTGAAATCAGAATATCTGGATGTCCAGCACTTAAAGAGTTGCCACTGAATTCCAGCAGTGCCCGAGGATGTAATCTCATCATCCAAGGAGAGGAATGGTGGTGGAATCGCTTACAATGGCCAAATGAAGATGCTCGAAATGCTTTCCTCCCCTGCTTCAGACATCGTAGTAGTAATCAGGTTCTTCCATGA

Protein Analysis

154

Amino Acids

17.66

Weight (kDa)

8.85

Isoelectric Point (pI)

48.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_RPS2 PF23247 3 - 105 4.6e-09 Plant disease resistance protein RPS2-like, leucine-rich repeats
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 229
AccIII TCCGGA 1 cut(s) 125
AciI CCGC 2 cut(s) 133, 227
AcoI YGGCCR 1 cut(s) 392
AcsI RAATTY 1 cut(s) 322
AcuI CTGAAG 1 cut(s) 415
AfiI CCNNNNNNNGG 2 cut(s) 132, 364
AflIII ACRYGT 2 cut(s) 34, 166
AgsI TTSAA 2 cut(s) 32, 64
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
Alw21I GWGCWC 2 cut(s) 166, 256
Alw26I GTCTC 1 cut(s) 171
Alw44I GTGCAC 2 cut(s) 162, 252
Ama87I CYCGRG 1 cut(s) 336
Aor13HI TCCGGA 1 cut(s) 125
AoxI GGCC 1 cut(s) 392
ApaLI GTGCAC 2 cut(s) 162, 252
ApeKI GCWGC 1 cut(s) 120
ApoI RAATTY 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 336
BaeGI GKGCMC 3 cut(s) 166, 256, 337
BalI TGGCCA 1 cut(s) 394
BbsI GAAGAC 1 cut(s) 215
Bbv12I GWGCWC 2 cut(s) 166, 256
BbvI GCAGC 1 cut(s) 107
BcoDI GTCTC 1 cut(s) 171
BisI GCNGC 1 cut(s) 121
BlsI GCNGC 1 cut(s) 122
BmeT110I CYCGRG 1 cut(s) 336
BmsI GCATC 1 cut(s) 394
BpiI GAAGAC 1 cut(s) 215
BpuEI CTTGAG 1 cut(s) 253
BsaAI YACGTR 1 cut(s) 37
BsaJI CCNNGG 2 cut(s) 337, 358
BsaWI WCCGGW 1 cut(s) 125
Bsc4I CCNNNNNNNGG 2 cut(s) 132, 364
Bse3DI GCAATG 1 cut(s) 21
BseAI TCCGGA 1 cut(s) 125
BseDI CCNNGG 2 cut(s) 337, 358
BseGI GGATG 3 cut(s) 299, 347, 354
BseLI CCNNNNNNNGG 2 cut(s) 132, 364
BseMI GCAATG 1 cut(s) 21
BseMII CTCAG 2 cut(s) 104, 263
BseSI GKGCMC 3 cut(s) 166, 256, 337
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 394
BsiHKAI GWGCWC 2 cut(s) 166, 256
BsiHKCI CYCGRG 1 cut(s) 336
BsiSI CCGG 1 cut(s) 126
BslI CCNNNNNNNGG 2 cut(s) 132, 364
BsmAI GTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 135
BsnI GGCC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 336
Bsp1286I GDGCHC 3 cut(s) 166, 256, 337
Bsp13I TCCGGA 1 cut(s) 125
BspACI CCGC 2 cut(s) 133, 227
BspANI GGCC 1 cut(s) 394
BspCNI CTCAG 2 cut(s) 103, 264
BspEI TCCGGA 1 cut(s) 125
BspQI GCTCTTC 1 cut(s) 33
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 21
BssECI CCNNGG 2 cut(s) 337, 358
BssT1I CCWWGG 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 33
BstBAI YACGTR 1 cut(s) 37
BstDEI CTNAG 2 cut(s) 90, 272
BstF5I GGATG 3 cut(s) 299, 347, 354
BstMAI GTCTC 1 cut(s) 171
BstMWI GCNNNNNNNGC 1 cut(s) 413
BstNSI RCATGY 1 cut(s) 170
BstSLI GKGCMC 3 cut(s) 166, 256, 337
BstV1I GCAGC 1 cut(s) 107
BstV2I GAAGAC 1 cut(s) 215
BsuRI GGCC 1 cut(s) 394
BtsCI GGATG 3 cut(s) 299, 347, 354
BtsI GCAGTG 2 cut(s) 254, 337
BtsIMutI CAGTG 3 cut(s) 254, 317, 337
CviAII CATG 4 cut(s) 75, 167, 181, 462
CviJI RGCY 4 cut(s) 48, 79, 120, 394
CviKI_1 RGCY 4 cut(s) 48, 79, 120, 394
DdeI CTNAG 2 cut(s) 90, 272
EaeI YGGCCR 1 cut(s) 392
Eam1104I CTCTTC 1 cut(s) 33
EarI CTCTTC 1 cut(s) 33
Eco130I CCWWGG 1 cut(s) 358
Eco57I CTGAAG 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 336
EcoRI GAATTC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 358
FaeI CATG 4 cut(s) 78, 170, 184, 465
FatI CATG 4 cut(s) 74, 166, 180, 461
FauI CCCGC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 121
FokI GGATG 3 cut(s) 306, 341, 354
Fsp4HI GCNGC 1 cut(s) 121
GluI GCNGC 1 cut(s) 121
HaeIII GGCC 1 cut(s) 394
HapII CCGG 1 cut(s) 126
Hin1II CATG 4 cut(s) 78, 170, 184, 465
HinfI GANTC 2 cut(s) 94, 379
HpaII CCGG 1 cut(s) 126
Hpy166II GTNNAC 2 cut(s) 164, 254
Hpy188I TCNGA 5 cut(s) 93, 104, 273, 284, 434
Hpy188III TCNNGA 4 cut(s) 126, 209, 232, 291
Hpy8I GTNNAC 2 cut(s) 164, 254
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 3 cut(s) 164, 194, 254
HpyF10VI GCNNNNNNNGC 1 cut(s) 413
HpyF3I CTNAG 2 cut(s) 90, 272
HpySE526I ACGT 1 cut(s) 36
Hsp92II CATG 4 cut(s) 78, 170, 184, 465
Kpn2I TCCGGA 1 cut(s) 125
LguI GCTCTTC 1 cut(s) 33
LmnI GCTCC 1 cut(s) 128
LpnPI CCDG 6 cut(s) 139, 276, 312, 340, 437, 439
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 394
MaeII ACGT 1 cut(s) 36
MbiI CCGCTC 1 cut(s) 229
MboII GAAGA 4 cut(s) 20, 215, 413, 449
MfeI CAATTG 1 cut(s) 59
MhlI GDGCHC 3 cut(s) 166, 256, 337
MlsI TGGCCA 1 cut(s) 394
MluCI AATT 2 cut(s) 59, 322
MluNI TGGCCA 1 cut(s) 394
MnlI CCTC 3 cut(s) 332, 358, 431
Mox20I TGGCCA 1 cut(s) 394
MroI TCCGGA 1 cut(s) 125
MscI TGGCCA 1 cut(s) 394
MseI TTAA 1 cut(s) 306
Msp20I TGGCCA 1 cut(s) 394
MspI CCGG 1 cut(s) 126
MunI CAATTG 1 cut(s) 59
Mva1269I GAATGC 1 cut(s) 135
MwoI GCNNNNNNNGC 1 cut(s) 413
NlaIII CATG 4 cut(s) 78, 170, 184, 465
NspI RCATGY 1 cut(s) 170
PciI ACATGT 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 33
PctI GAATGC 1 cut(s) 135
PfeI GAWTC 2 cut(s) 94, 379
PkrI GCNGC 1 cut(s) 122
Ppu21I YACGTR 1 cut(s) 37
PscI ACATGT 1 cut(s) 166
SapI GCTCTTC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 306
SatI GCNGC 1 cut(s) 121
SduI GDGCHC 3 cut(s) 166, 256, 337
SetI ASST 3 cut(s) 39, 50, 456
SfaNI GCATC 1 cut(s) 394
SmlI CTYRAG 1 cut(s) 232
SmoI CTYRAG 1 cut(s) 232
Sse9I AATT 2 cut(s) 59, 322
SsiI CCGC 2 cut(s) 133, 227
StyI CCWWGG 1 cut(s) 358
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 409
TasI AATT 2 cut(s) 59, 322
TfiI GAWTC 2 cut(s) 94, 379
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 3 cut(s) 261, 324, 337
TseI GCWGC 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 197, 414
TspRI CASTG 3 cut(s) 261, 324, 337
VneI GTGCAC 2 cut(s) 162, 252
XapI RAATTY 1 cut(s) 322
XceI RCATGY 1 cut(s) 170
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.