pycom17g20910

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Reverse (-)
19343560 .. 19343931
372 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g20910.1

Sequence Viewer

Length: 372 bp
ATGCAGGGTTTGGAATACCTTGATGTTTTGACTTTGAGTGTACGGATTAGCTCTTTTTGGCAAAAATTGATCGGATACCAGAAATTGGTGACCTGCATTCGGACTCTACAGCTCTCGGATGGCAAGAACCAAGCAAGCTTTCTAGACATATCTTCTTTGGTGGATATGAAACATCTTGATACCCTTTATATTCGGGATACTCCTAATTGGAAACAATTGGAAGTTCATTGGGCAGGGCGAGCACCTAACGATCCTTGGGATTTAATGATGATAAAACAAAATTGCTTTAAGATTATCCGTTGCATGTCCAGATTATCCGTAGCATACATGATAGTCCCCTGCCCTTTCCATACCTGGAAGAAATCAAGGTAG

Protein Analysis

124

Amino Acids

14.47

Weight (kDa)

9.33

Isoelectric Point (pI)

21.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 101
AccB7I CCANNNNNTGG 1 cut(s) 85
AclWI GGATC 1 cut(s) 245
AfaI GTAC 1 cut(s) 42
AfiI CCNNNNNNNGG 2 cut(s) 85, 99
AjnI CCWGG 1 cut(s) 353
AjuI GAANNNNNNNTTGG 2 cut(s) 123, 155
AluBI AGCT 3 cut(s) 51, 112, 138
AluI AGCT 3 cut(s) 51, 112, 138
Alw21I GWGCWC 1 cut(s) 244
AlwI GGATC 1 cut(s) 245
AsuHPI GGTGA 1 cut(s) 100
Bbv12I GWGCWC 1 cut(s) 244
BccI CCATC 1 cut(s) 113
BciT130I CCWGG 1 cut(s) 355
BciVI GTATCC 2 cut(s) 68, 190
BfaI CTAG 1 cut(s) 143
BfmI CTRYAG 1 cut(s) 107
BfuAI ACCTGC 1 cut(s) 101
BfuI GTATCC 2 cut(s) 68, 190
Bme1390I CCNGG 1 cut(s) 355
BmrFI CCNGG 1 cut(s) 355
BsaJI CCNNGG 1 cut(s) 254
Bsc4I CCNNNNNNNGG 2 cut(s) 85, 99
BseBI CCWGG 1 cut(s) 355
BseDI CCNNGG 1 cut(s) 254
BseGI GGATG 1 cut(s) 124
BseLI CCNNNNNNNGG 2 cut(s) 85, 99
BsiHKAI GWGCWC 1 cut(s) 244
BslFI GGGAC 1 cut(s) 320
BslI CCNNNNNNNGG 2 cut(s) 85, 99
BsmFI GGGAC 1 cut(s) 320
BsmI GAATGC 1 cut(s) 96
Bsp1286I GDGCHC 1 cut(s) 244
Bsp143I GATC 2 cut(s) 69, 250
BspMI ACCTGC 1 cut(s) 101
BspPI GGATC 1 cut(s) 245
BssECI CCNNGG 1 cut(s) 254
BssMI GATC 2 cut(s) 69, 250
BssT1I CCWWGG 1 cut(s) 254
Bst2UI CCWGG 1 cut(s) 355
BstC8I GCNNGC 2 cut(s) 136, 240
BstEII GGTNACC 1 cut(s) 88
BstF5I GGATG 1 cut(s) 124
BstKTI GATC 2 cut(s) 72, 253
BstMBI GATC 2 cut(s) 69, 250
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 355
BstNSI RCATGY 1 cut(s) 307
BstPI GGTNACC 1 cut(s) 88
BstSCI CCNGG 1 cut(s) 353
BstSFI CTRYAG 1 cut(s) 107
BsuI GTATCC 2 cut(s) 68, 190
BtsCI GGATG 1 cut(s) 124
BveI ACCTGC 1 cut(s) 101
Cac8I GCNNGC 2 cut(s) 136, 240
Csp6I GTAC 1 cut(s) 41
CviAII CATG 2 cut(s) 304, 328
CviJI RGCY 3 cut(s) 51, 112, 138
CviKI_1 RGCY 3 cut(s) 51, 112, 138
CviQI GTAC 1 cut(s) 41
DpnI GATC 2 cut(s) 71, 252
DpnII GATC 2 cut(s) 69, 250
Eco130I CCWWGG 1 cut(s) 254
Eco91I GGTNACC 1 cut(s) 88
EcoO65I GGTNACC 1 cut(s) 88
EcoRII CCWGG 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 254
ErhI CCWWGG 1 cut(s) 254
FaeI CATG 2 cut(s) 307, 331
FaiI YATR 7 cut(s) 149, 167, 189, 305, 325, 329, 351
FaqI GGGAC 1 cut(s) 320
FatI CATG 2 cut(s) 303, 327
FokI GGATG 1 cut(s) 131
FspBI CTAG 1 cut(s) 143
Hin1II CATG 2 cut(s) 307, 331
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 1 cut(s) 103
HphI GGTGA 1 cut(s) 100
Hpy166II GTNNAC 1 cut(s) 41
Hpy188I TCNGA 3 cut(s) 74, 102, 118
Hpy188III TCNNGA 4 cut(s) 143, 176, 194, 309
Hpy8I GTNNAC 1 cut(s) 41
HpyCH4V TGCA 3 cut(s) 4, 96, 303
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
Hsp92II CATG 2 cut(s) 307, 331
Kzo9I GATC 2 cut(s) 69, 250
LpnPI CCDG 7 cut(s) 92, 106, 219, 322, 340, 352, 367
MaeI CTAG 1 cut(s) 143
MaeIII GTNAC 1 cut(s) 88
MalI GATC 2 cut(s) 71, 252
MboI GATC 2 cut(s) 69, 250
MboII GAAGA 2 cut(s) 144, 370
MfeI CAATTG 1 cut(s) 215
MhlI GDGCHC 1 cut(s) 244
MluCI AATT 5 cut(s) 65, 83, 205, 215, 280
MlyI GAGTC 1 cut(s) 97
MseI TTAA 2 cut(s) 263, 288
MspR9I CCNGG 1 cut(s) 355
MunI CAATTG 1 cut(s) 215
Mva1269I GAATGC 1 cut(s) 96
MvaI CCWGG 1 cut(s) 355
MwoI GCNNNNNNNGC 1 cut(s) 239
NdeII GATC 2 cut(s) 69, 250
NlaIII CATG 2 cut(s) 307, 331
NmuCI GTSAC 1 cut(s) 88
NspI RCATGY 1 cut(s) 307
PctI GAATGC 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 85
PleI GAGTC 1 cut(s) 97
PpsI GAGTC 1 cut(s) 97
Psp6I CCWGG 1 cut(s) 353
PspEI GGTNACC 1 cut(s) 88
PspGI CCWGG 1 cut(s) 353
RsaI GTAC 1 cut(s) 42
RsaNI GTAC 1 cut(s) 41
SaqAI TTAA 2 cut(s) 263, 288
Sau3AI GATC 2 cut(s) 69, 250
SchI GAGTC 1 cut(s) 97
ScrFI CCNGG 1 cut(s) 355
SduI GDGCHC 1 cut(s) 244
SetI ASST 8 cut(s) 21, 53, 95, 114, 140, 247, 356, 371
SfcI CTRYAG 1 cut(s) 107
Sse9I AATT 5 cut(s) 65, 83, 205, 215, 280
SspMI CTAG 1 cut(s) 143
StyD4I CCNGG 1 cut(s) 353
StyI CCWWGG 1 cut(s) 254
TasI AATT 5 cut(s) 65, 83, 205, 215, 280
Tru1I TTAA 2 cut(s) 263, 288
Tru9I TTAA 2 cut(s) 263, 288
TseFI GTSAC 1 cut(s) 88
Tsp45I GTSAC 1 cut(s) 88
TspDTI ATGAA 2 cut(s) 182, 215
TspGWI ACGGA 3 cut(s) 58, 287, 307
Van91I CCANNNNNTGG 1 cut(s) 85
XbaI TCTAGA 1 cut(s) 142
XceI RCATGY 1 cut(s) 307
XspI CTAG 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.