MD17G1205700.v1.1

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
24918725 .. 24919572
848 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1205700.v1.1.491

Sequence Viewer

Length: 153 bp
ATGAGTTTTCTGAGAAGCGTATATGATAGTGCCCTGCCCTTTCCGTACCTGAAAGAAATCAAGGTAACTGCATGTACAGTGCTGAGAAAGCTTCCATTCAACTCCAGAAGTGCTGAGGGGAGCAATATTGTAATTAGAGGACATGAGTACTAG

Protein Analysis

51

Amino Acids

5.71

Weight (kDa)

9.43

Isoelectric Point (pI)

90.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 3 cut(s) 47, 76, 149
AgsI TTSAA 1 cut(s) 100
AluBI AGCT 1 cut(s) 91
AluI AGCT 1 cut(s) 91
BaeGI GKGCMC 1 cut(s) 34
BbvCI CCTCAGC 1 cut(s) 114
BfaI CTAG 1 cut(s) 151
BmcAI AGTACT 1 cut(s) 149
BpmI CTGGAG 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 114
BseMII CTCAG 2 cut(s) 74, 105
BseSI GKGCMC 1 cut(s) 34
Bsp1286I GDGCHC 1 cut(s) 34
Bsp1407I TGTACA 1 cut(s) 74
BspCNI CTCAG 2 cut(s) 75, 106
BsrGI TGTACA 1 cut(s) 74
Bst4CI ACNGT 1 cut(s) 79
BstAUI TGTACA 1 cut(s) 74
BstDEI CTNAG 3 cut(s) 11, 83, 114
BstMWI GCNNNNNNNGC 1 cut(s) 88
BstNSI RCATGY 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 34
BtsIMutI CAGTG 1 cut(s) 84
Csp6I GTAC 3 cut(s) 46, 75, 148
CviAII CATG 2 cut(s) 72, 143
CviJI RGCY 1 cut(s) 91
CviKI_1 RGCY 1 cut(s) 91
CviQI GTAC 3 cut(s) 46, 75, 148
DdeI CTNAG 3 cut(s) 11, 83, 114
FaeI CATG 2 cut(s) 75, 146
FaiI YATR 4 cut(s) 22, 24, 73, 144
FatI CATG 2 cut(s) 71, 142
FspBI CTAG 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 88
Hin1II CATG 2 cut(s) 75, 146
HindIII AAGCTT 1 cut(s) 89
Hpy188I TCNGA 1 cut(s) 12
Hpy188III TCNNGA 1 cut(s) 105
HpyCH4III ACNGT 1 cut(s) 79
HpyCH4V TGCA 1 cut(s) 71
HpyF10VI GCNNNNNNNGC 1 cut(s) 88
HpyF3I CTNAG 3 cut(s) 11, 83, 114
Hsp92II CATG 2 cut(s) 75, 146
LmnI GCTCC 1 cut(s) 120
LpnPI CCDG 3 cut(s) 47, 62, 118
MaeI CTAG 1 cut(s) 151
MaeIII GTNAC 1 cut(s) 64
MhlI GDGCHC 1 cut(s) 34
MluCI AATT 1 cut(s) 132
MnlI CCTC 2 cut(s) 109, 131
MwoI GCNNNNNNNGC 1 cut(s) 88
NlaIII CATG 2 cut(s) 75, 146
NspI RCATGY 1 cut(s) 75
RsaI GTAC 3 cut(s) 47, 76, 149
RsaNI GTAC 3 cut(s) 46, 75, 148
ScaI AGTACT 1 cut(s) 149
SduI GDGCHC 1 cut(s) 34
SetI ASST 3 cut(s) 51, 66, 93
SgeI CNNG 5 cut(s) 46, 61, 73, 84, 117
Sse9I AATT 1 cut(s) 132
SspI AATATT 1 cut(s) 127
SspMI CTAG 1 cut(s) 151
TaaI ACNGT 1 cut(s) 79
TasI AATT 1 cut(s) 132
TatI WGTACW 2 cut(s) 74, 147
TscAI CASTG 1 cut(s) 84
TspGWI ACGGA 1 cut(s) 33
TspRI CASTG 1 cut(s) 84
XceI RCATGY 1 cut(s) 75
XspI CTAG 1 cut(s) 151
ZrmI AGTACT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.