RLG00000018943

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
43296381 .. 43296770
390 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000018943

Sequence Viewer

Length: 390 bp
ATGACGAGTGGAAGGATAAAACACAGTCAAGAAATATTATGTGTCCTAAGCAGAAATAAATTTGTGTTATTATTGGATGATATATGGGATCGGGTTGACTTGATCAAAGTAGGCGTTCCAGTTTCTAACCAAGTAAACAACTCCAAGATAGTGTTCACAACTCGCTCGGAGGATGTTTACAATCTTATGGGAGCTCAAAAGAAGATTAGAGTGGAGATCTTGGACCGATACAAAGCTTTGGACTTGTTTCAAGAGAAAGTTGGAAAAGAAACACACTCTATTCATCCAAATATCCCAAAACTTGCTGAATTTGTGGCAAGAAAGTGTGGTAGTTTGCCCCTTGCATTAATTACAGTTGGTCAGGCCATAGCTTGCAAGAAGACACCCTAA

Protein Analysis

130

Amino Acids

14.51

Weight (kDa)

9.51

Isoelectric Point (pI)

28.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 9 - 91 2.5e-20 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 96
AcsI RAATTY 2 cut(s) 59, 308
AgsI TTSAA 1 cut(s) 251
AjuI GAANNNNNNNTTGG 2 cut(s) 137, 169
AluBI AGCT 3 cut(s) 194, 236, 371
AluI AGCT 3 cut(s) 194, 236, 371
Alw21I GWGCWC 1 cut(s) 196
AlwI GGATC 1 cut(s) 96
AoxI GGCC 1 cut(s) 363
ApoI RAATTY 2 cut(s) 59, 308
AseI ATTAAT 1 cut(s) 347
AspS9I GGNCC 1 cut(s) 223
AvaII GGWCC 1 cut(s) 223
BanII GRGCYC 1 cut(s) 196
BbsI GAAGAC 1 cut(s) 386
Bbv12I GWGCWC 1 cut(s) 196
BclI TGATCA 1 cut(s) 102
BglII AGATCT 1 cut(s) 216
Bme18I GGWCC 1 cut(s) 223
BmgT120I GGNCC 1 cut(s) 223
BpiI GAAGAC 1 cut(s) 386
Bpu10I CCTNAGC 1 cut(s) 47
Bse1I ACTGG 1 cut(s) 119
BseGI GGATG 3 cut(s) 82, 178, 283
BseNI ACTGG 1 cut(s) 119
BshFI GGCC 1 cut(s) 365
BsiHKAI GWGCWC 1 cut(s) 196
BsnI GGCC 1 cut(s) 365
Bsp1286I GDGCHC 1 cut(s) 196
Bsp143I GATC 3 cut(s) 88, 102, 216
BspANI GGCC 1 cut(s) 365
BspPI GGATC 1 cut(s) 96
BsrI ACTGG 1 cut(s) 119
BssMI GATC 3 cut(s) 88, 102, 216
Bst4CI ACNGT 2 cut(s) 26, 355
BstC8I GCNNGC 1 cut(s) 373
BstDEI CTNAG 1 cut(s) 47
BstF5I GGATG 3 cut(s) 82, 178, 283
BstKTI GATC 3 cut(s) 91, 105, 219
BstMBI GATC 3 cut(s) 88, 102, 216
BstV2I GAAGAC 1 cut(s) 386
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BsuRI GGCC 1 cut(s) 365
BtsCI GGATG 3 cut(s) 82, 178, 283
Cac8I GCNNGC 1 cut(s) 373
Cfr13I GGNCC 1 cut(s) 223
CviJI RGCY 4 cut(s) 194, 236, 365, 371
CviKI_1 RGCY 4 cut(s) 194, 236, 365, 371
DdeI CTNAG 1 cut(s) 47
DpnI GATC 3 cut(s) 90, 104, 218
DpnII GATC 3 cut(s) 88, 102, 216
Ecl136II GAGCTC 1 cut(s) 194
Eco24I GRGCYC 1 cut(s) 196
Eco47I GGWCC 1 cut(s) 223
Eco53kI GAGCTC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 194
EcoT38I GRGCYC 1 cut(s) 196
FaiI YATR 5 cut(s) 40, 83, 85, 188, 368
FbaI TGATCA 1 cut(s) 102
FokI GGATG 3 cut(s) 89, 185, 270
FriOI GRGCYC 1 cut(s) 196
HaeIII GGCC 1 cut(s) 365
HincII GTYRAC 1 cut(s) 97
HindII GTYRAC 1 cut(s) 97
HindIII AAGCTT 1 cut(s) 234
Hpy166II GTNNAC 4 cut(s) 97, 136, 156, 178
Hpy188I TCNGA 1 cut(s) 169
Hpy188III TCNNGA 2 cut(s) 29, 251
Hpy8I GTNNAC 4 cut(s) 97, 136, 156, 178
HpyAV CCTTC 1 cut(s) 6
HpyCH4III ACNGT 2 cut(s) 26, 355
HpyCH4V TGCA 2 cut(s) 344, 375
HpyF3I CTNAG 1 cut(s) 47
Ksp22I TGATCA 1 cut(s) 102
Kzo9I GATC 3 cut(s) 88, 102, 216
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 2 cut(s) 132, 347
MalI GATC 3 cut(s) 90, 104, 218
MboI GATC 3 cut(s) 88, 102, 216
MboII GAAGA 1 cut(s) 214
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 196
MluCI AATT 3 cut(s) 59, 308, 348
MmeI TCCRAC 1 cut(s) 241
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 347
NdeII GATC 3 cut(s) 88, 102, 216
PshBI ATTAAT 1 cut(s) 347
Psp124BI GAGCTC 1 cut(s) 196
PspPI GGNCC 1 cut(s) 223
PsuI RGATCY 1 cut(s) 216
SacI GAGCTC 1 cut(s) 196
SaqAI TTAA 1 cut(s) 347
Sau3AI GATC 3 cut(s) 88, 102, 216
Sau96I GGNCC 1 cut(s) 223
SduI GDGCHC 1 cut(s) 196
SetI ASST 3 cut(s) 196, 238, 373
SinI GGWCC 1 cut(s) 223
Sse9I AATT 3 cut(s) 59, 308, 348
SspI AATATT 1 cut(s) 36
SstI GAGCTC 1 cut(s) 196
TaaI ACNGT 2 cut(s) 26, 355
TaqII GACCGA 1 cut(s) 240
TasI AATT 3 cut(s) 59, 308, 348
Tru1I TTAA 1 cut(s) 347
Tru9I TTAA 1 cut(s) 347
TspDTI ATGAA 1 cut(s) 272
VpaK11BI GGWCC 1 cut(s) 223
VspI ATTAAT 1 cut(s) 347
XapI RAATTY 2 cut(s) 59, 308
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.