Prupe.3G099800_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000363
Physical Location & Seq
Reverse (-)
7649930 .. 7653474
3545 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.3G099800.2

Sequence Viewer

Length: 759 bp
ATGGACAGTCCAAGTTCCAAACTGAGAGTTTTGAGACTATATAAATGTGGTACTTGCAAAAGTATCCTTGTTGGGGATAATGAGCACCTGGGAAGTGAATTTCAATCTTTGAAGCACTTGGATATGTTGACCTTGACCATACAAAGTGTTTCTGTTTTCAAAAAGTTTTTCACCTCCAACAAACTACTGAGCTGCACTCAATTTCTATGCCTTGATGGTTTGAGCTTTCTTGATATATCATCACTGACGTATATGAAACGTCCACATTCTCTTACCATTAGTAGTTGTGAAATTGTGGACTACAATGTCTCAAGGCAAAGTTCCTTTAAACACCTACAAGCAGTGGATATACATGATTGCCCCAACTTGAGGGACTTGACGTGGCTAATTTGTGCTCCAAATCTCAAGAAACTATATGTACGTTCATGTTCCAATATGAGAGAAGTAATCCAACTTGAAAGACGGGATGAAGTTGCGCAGCTAGAAGAGACGAATCATTTTGCAAAGCTTGATGAATTGATATTGAAAAGCCTACCGCAGCTGCAGAGCATATATGGAGGGGACACTTTGCCTTTTCCATATCTGAGGAGAATCGAGGTCCTTGACTGTCAAAATTTAAAGAAGCTTCCTCTCAACTTTAGCAATGTCCCCAAACGAGATCTTGTCATTGCTGGAGAAGAAGACTGGTGGAATATGTTGAATTGGGAGGATGACGTTACTCGTAATGCTTTTCATCCCTGTTTTAGACCACACAAGTAA

Protein Analysis

253

Amino Acids

29.2

Weight (kDa)

7.56

Isoelectric Point (pI)

56.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 305
Acc16I TGCGCA 1 cut(s) 477
AciI CCGC 1 cut(s) 536
AcsI RAATTY 2 cut(s) 98, 613
AfaI GTAC 2 cut(s) 52, 420
AfiI CCNNNNNNNGG 2 cut(s) 73, 369
AgsI TTSAA 6 cut(s) 104, 112, 160, 458, 526, 700
AjiI CACGTC 1 cut(s) 381
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 6 cut(s) 192, 225, 481, 508, 541, 625
AluI AGCT 6 cut(s) 192, 225, 481, 508, 541, 625
Alw21I GWGCWC 2 cut(s) 87, 397
Alw26I GTCTC 3 cut(s) 28, 313, 482
ApeKI GCWGC 4 cut(s) 192, 478, 538, 541
ApoI RAATTY 2 cut(s) 98, 613
AspLEI GCGC 1 cut(s) 478
AspS9I GGNCC 1 cut(s) 598
AsuHPI GGTGA 1 cut(s) 163
AvaII GGWCC 1 cut(s) 598
BbsI GAAGAC 1 cut(s) 687
Bbv12I GWGCWC 2 cut(s) 87, 397
BbvI GCAGC 4 cut(s) 179, 490, 528, 550
BccI CCATC 1 cut(s) 209
BciT130I CCWGG 1 cut(s) 89
BciVI GTATCC 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 28, 313, 482
BfaI CTAG 1 cut(s) 482
BfmI CTRYAG 1 cut(s) 542
BfuI GTATCC 1 cut(s) 74
BglII AGATCT 1 cut(s) 658
BisI GCNGC 4 cut(s) 193, 479, 539, 542
BlsI GCNGC 4 cut(s) 194, 480, 540, 543
Bme1390I CCNGG 1 cut(s) 89
Bme18I GGWCC 1 cut(s) 598
BmgBI CACGTC 1 cut(s) 381
BmgT120I GGNCC 1 cut(s) 598
BmrFI CCNGG 1 cut(s) 89
BpiI GAAGAC 1 cut(s) 687
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 1 cut(s) 693
BpuEI CTTGAG 3 cut(s) 295, 388, 389
BsaJI CCNNGG 1 cut(s) 88
Bsc4I CCNNNNNNNGG 2 cut(s) 73, 369
Bse1I ACTGG 1 cut(s) 689
Bse3DI GCAATG 2 cut(s) 649, 666
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 1 cut(s) 88
BseGI GGATG 3 cut(s) 472, 715, 733
BseLI CCNNNNNNNGG 2 cut(s) 73, 369
BseMI GCAATG 2 cut(s) 649, 666
BseMII CTCAG 3 cut(s) 14, 179, 575
BseNI ACTGG 1 cut(s) 689
BseRI GAGGAG 1 cut(s) 601
BseXI GCAGC 4 cut(s) 179, 490, 528, 550
BsgI GTGCAG 1 cut(s) 178
BsiHKAI GWGCWC 2 cut(s) 87, 397
BslFI GGGAC 3 cut(s) 386, 575, 632
BslI CCNNNNNNNGG 2 cut(s) 73, 369
BsmAI GTCTC 3 cut(s) 28, 313, 482
BsmBI CGTCTC 1 cut(s) 482
BsmFI GGGAC 3 cut(s) 386, 575, 632
Bsp1286I GDGCHC 2 cut(s) 87, 397
Bsp143I GATC 1 cut(s) 658
BspACI CCGC 1 cut(s) 536
BspCNI CTCAG 3 cut(s) 15, 180, 576
BspMAI CTGCAG 1 cut(s) 546
BsrDI GCAATG 2 cut(s) 649, 666
BsrI ACTGG 1 cut(s) 689
BssECI CCNNGG 1 cut(s) 88
BssMI GATC 1 cut(s) 658
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 2 cut(s) 8, 608
Bst6I CTCTTC 1 cut(s) 480
BstDEI CTNAG 3 cut(s) 23, 188, 584
BstF5I GGATG 3 cut(s) 472, 715, 733
BstHHI GCGC 1 cut(s) 478
BstKTI GATC 1 cut(s) 661
BstMAI GTCTC 3 cut(s) 28, 313, 482
BstMBI GATC 1 cut(s) 658
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 542
BstV1I GCAGC 4 cut(s) 179, 490, 528, 550
BstV2I GAAGAC 1 cut(s) 687
BstX2I RGATCY 1 cut(s) 658
BstYI RGATCY 1 cut(s) 658
BsuI GTATCC 1 cut(s) 74
BtrI CACGTC 1 cut(s) 381
BtsCI GGATG 3 cut(s) 472, 715, 733
BtsI GCAGTG 1 cut(s) 348
BtsIMutI CAGTG 2 cut(s) 242, 348
CfoI GCGC 1 cut(s) 478
Cfr13I GGNCC 1 cut(s) 598
Csp6I GTAC 2 cut(s) 51, 419
CviAII CATG 2 cut(s) 353, 426
CviJI RGCY 8 cut(s) 192, 225, 385, 481, 508, 531, 541, 625
CviKI_1 RGCY 8 cut(s) 192, 225, 385, 481, 508, 531, 541, 625
CviQI GTAC 2 cut(s) 51, 419
DdeI CTNAG 3 cut(s) 23, 188, 584
DpnI GATC 1 cut(s) 660
DpnII GATC 1 cut(s) 658
DraI TTTAAA 2 cut(s) 328, 618
DrdI GACNNNNNNGTC 1 cut(s) 305
DseDI GACNNNNNNGTC 1 cut(s) 305
Eam1104I CTCTTC 1 cut(s) 480
EarI CTCTTC 1 cut(s) 480
Eco47I GGWCC 1 cut(s) 598
EcoO109I RGGNCCY 1 cut(s) 598
EcoRII CCWGG 1 cut(s) 87
Esp3I CGTCTC 1 cut(s) 482
FaeI CATG 2 cut(s) 356, 429
FaqI GGGAC 3 cut(s) 386, 575, 632
FatI CATG 2 cut(s) 352, 425
Fnu4HI GCNGC 4 cut(s) 193, 479, 539, 542
FokI GGATG 3 cut(s) 479, 720, 722
Fsp4HI GCNGC 4 cut(s) 193, 479, 539, 542
FspBI CTAG 1 cut(s) 482
FspI TGCGCA 1 cut(s) 477
GlaI GCGC 1 cut(s) 477
GluI GCNGC 4 cut(s) 193, 479, 539, 542
GsuI CTGGAG 1 cut(s) 693
HhaI GCGC 1 cut(s) 478
Hin1II CATG 2 cut(s) 356, 429
Hin6I GCGC 1 cut(s) 476
HinP1I GCGC 1 cut(s) 476
HincII GTYRAC 1 cut(s) 129
HindII GTYRAC 1 cut(s) 129
HindIII AAGCTT 2 cut(s) 506, 623
HinfI GANTC 2 cut(s) 493, 591
HphI GGTGA 1 cut(s) 163
Hpy166II GTNNAC 3 cut(s) 129, 263, 298
Hpy188I TCNGA 1 cut(s) 585
Hpy188III TCNNGA 2 cut(s) 230, 406
Hpy8I GTNNAC 3 cut(s) 129, 263, 298
HpyCH4III ACNGT 2 cut(s) 8, 608
HpyCH4IV ACGT 5 cut(s) 248, 259, 380, 421, 714
HpyCH4V TGCA 4 cut(s) 57, 195, 503, 544
HpyF3I CTNAG 3 cut(s) 23, 188, 584
HpySE526I ACGT 5 cut(s) 248, 259, 380, 421, 714
Hsp92II CATG 2 cut(s) 356, 429
HspAI GCGC 1 cut(s) 476
Kzo9I GATC 1 cut(s) 658
LmnI GCTCC 1 cut(s) 400
LpnPI CCDG 5 cut(s) 74, 101, 657, 670, 751
Lsp1109I GCAGC 4 cut(s) 179, 490, 528, 550
MaeI CTAG 1 cut(s) 482
MaeII ACGT 5 cut(s) 248, 259, 380, 421, 714
MaeIII GTNAC 1 cut(s) 715
MalI GATC 1 cut(s) 660
MboI GATC 1 cut(s) 658
MboII GAAGA 3 cut(s) 497, 689, 692
MflI RGATCY 1 cut(s) 658
MhlI GDGCHC 2 cut(s) 87, 397
MluCI AATT 7 cut(s) 98, 200, 291, 387, 515, 613, 700
MmeI TCCRAC 2 cut(s) 201, 475
MnlI CCTC 7 cut(s) 184, 363, 551, 579, 589, 639, 700
MseI TTAA 2 cut(s) 327, 617
MspA1I CMGCKG 1 cut(s) 541
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
NdeII GATC 1 cut(s) 658
NlaIII CATG 2 cut(s) 356, 429
NsbI TGCGCA 1 cut(s) 477
PfeI GAWTC 2 cut(s) 493, 591
PkrI GCNGC 4 cut(s) 194, 480, 540, 543
PpuMI RGGWCCY 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspPI GGNCC 1 cut(s) 598
PspPPI RGGWCCY 1 cut(s) 598
PstI CTGCAG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 658
PvuII CAGCTG 1 cut(s) 541
RsaI GTAC 2 cut(s) 52, 420
RsaNI GTAC 2 cut(s) 51, 419
SaqAI TTAA 2 cut(s) 327, 617
SatI GCNGC 4 cut(s) 193, 479, 539, 542
Sau3AI GATC 1 cut(s) 658
Sau96I GGNCC 1 cut(s) 598
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 2 cut(s) 87, 397
SfcI CTRYAG 1 cut(s) 542
SinI GGWCC 1 cut(s) 598
SmlI CTYRAG 3 cut(s) 310, 367, 404
SmoI CTYRAG 3 cut(s) 310, 367, 404
Sse9I AATT 7 cut(s) 98, 200, 291, 387, 515, 613, 700
SsiI CCGC 1 cut(s) 536
SspMI CTAG 1 cut(s) 482
StyD4I CCNGG 1 cut(s) 87
TaaI ACNGT 2 cut(s) 8, 608
TaiI ACGT 5 cut(s) 251, 262, 383, 424, 717
TaqI TCGA 1 cut(s) 594
TasI AATT 7 cut(s) 98, 200, 291, 387, 515, 613, 700
TfiI GAWTC 2 cut(s) 493, 591
Tru1I TTAA 2 cut(s) 327, 617
Tru9I TTAA 2 cut(s) 327, 617
TscAI CASTG 2 cut(s) 249, 348
TseI GCWGC 4 cut(s) 192, 478, 538, 541
TspDTI ATGAA 5 cut(s) 269, 414, 483, 528, 722
TspRI CASTG 2 cut(s) 249, 348
VpaK11BI GGWCC 1 cut(s) 598
XapI RAATTY 2 cut(s) 98, 613
XspI CTAG 1 cut(s) 482
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.