Prupe.3G080500_v2.0.a1

Belongs to the disease resistance NB-LRR family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp03
OG0000363
Physical Location & Seq
Forward (+)
5975782 .. 5976641
860 bp
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UTR
Exon/CDS
Intron
Prupe.3G080500.1

Sequence Viewer

Length: 594 bp
ATGGTTGCCGGAGGAGTTAGCAGCATGTGCACGCGTAAAGGCGAGGATTACGGGAACCCTTCAAGGTATCTTGATTTATCACCTGTGGCGATGGCAAATATGAAACACCTTGATACCCTTCAAATTAAACGTATGGTGGATGTGTACTCCACGTGGATAACACGTCTGGAAAATCCGACTTGCTTCCTTGGTCTTCAGTTCGTAGAAGTAGTAGATTGCACGAATCTCAAGAACCTGGAATGGCTCGTTTTTGCTCCAAATCTCATCCACTTGCATGTATATGGCTGCTCTAAAATGACAAGAATACTCGGTTTGAACAGAACGGAAACTACCCCATTTGCAAAACTCACTGTTTTGCGTTTGAGCAAACTACCCCACTTGTGGAGAATATGCGAAAATCCCTTGCCCGTTCCATTTCTGAAGAAAATCCTTATATCTGGATGTCCAGTGCTCACTAGGCTGCCTCTCAACTCTAGCAGTGCTCAAACAAGTAATCTCATTATTGAAGGAGAGGAAAAGTGGTGGAATGGCTTAGAGTGGGAGGACCAAGCGGCCCGAAATGCTTTTCTTCCCTGCTTCAGATCCTGTAAGTGA

Protein Analysis

198

Amino Acids

22.4

Weight (kDa)

8.8

Isoelectric Point (pI)

43.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 1 cut(s) 551
AclWI GGATC 1 cut(s) 576
AcuI CTGAAG 3 cut(s) 179, 440, 562
AcvI CACGTG 1 cut(s) 153
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 381
AflIII ACRYGT 2 cut(s) 32, 161
AgsI TTSAA 4 cut(s) 63, 122, 316, 506
AjiI CACGTC 1 cut(s) 164
AjnI CCWGG 1 cut(s) 234
Alw21I GWGCWC 3 cut(s) 32, 453, 484
Alw44I GTGCAC 1 cut(s) 28
AlwI GGATC 1 cut(s) 576
AlwNI CAGNNNCTG 1 cut(s) 585
AoxI GGCC 1 cut(s) 552
ApaLI GTGCAC 1 cut(s) 28
ApeKI GCWGC 3 cut(s) 21, 285, 460
AspS9I GGNCC 2 cut(s) 544, 553
AsuHPI GGTGA 1 cut(s) 72
AvaII GGWCC 1 cut(s) 544
BaeGI GKGCMC 1 cut(s) 32
BbrPI CACGTG 1 cut(s) 153
BbsI GAAGAC 1 cut(s) 185
Bbv12I GWGCWC 3 cut(s) 32, 453, 484
BbvI GCAGC 3 cut(s) 33, 272, 447
BccI CCATC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 236
BfaI CTAG 2 cut(s) 456, 474
BisI GCNGC 4 cut(s) 22, 286, 461, 552
BlsI GCNGC 4 cut(s) 23, 287, 462, 553
Bme1390I CCNGG 1 cut(s) 236
Bme18I GGWCC 1 cut(s) 544
BmgBI CACGTC 1 cut(s) 164
BmgT120I GGNCC 2 cut(s) 544, 553
BmiI GGNNCC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 236
BpiI GAAGAC 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 153
BsaJI CCNNGG 1 cut(s) 187
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 1 cut(s) 446
BseBI CCWGG 1 cut(s) 236
BseDI CCNNGG 1 cut(s) 187
BseGI GGATG 3 cut(s) 145, 264, 446
BseLI CCNNNNNNNGG 1 cut(s) 381
BseNI ACTGG 1 cut(s) 446
BseRI GAGGAG 1 cut(s) 27
BseSI GKGCMC 1 cut(s) 32
BseXI GCAGC 3 cut(s) 33, 272, 447
Bsh1236I CGCG 1 cut(s) 34
BshFI GGCC 1 cut(s) 554
BsiHKAI GWGCWC 3 cut(s) 32, 453, 484
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 381
BsnI GGCC 1 cut(s) 554
Bsp1286I GDGCHC 3 cut(s) 32, 453, 484
Bsp143I GATC 1 cut(s) 581
BspACI CCGC 1 cut(s) 551
BspANI GGCC 1 cut(s) 554
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 56
BspPI GGATC 1 cut(s) 576
BsrI ACTGG 1 cut(s) 446
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 581
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 1 cut(s) 236
Bst4CI ACNGT 1 cut(s) 352
BstAPI GCANNNNNTGC 1 cut(s) 27
BstBAI YACGTR 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 32
BstDEI CTNAG 1 cut(s) 532
BstF5I GGATG 3 cut(s) 145, 264, 446
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 1 cut(s) 584
BstMBI GATC 1 cut(s) 581
BstMWI GCNNNNNNNGC 3 cut(s) 27, 457, 560
BstNI CCWGG 1 cut(s) 236
BstNSI RCATGY 2 cut(s) 28, 278
BstSCI CCNGG 1 cut(s) 234
BstSLI GKGCMC 1 cut(s) 32
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 3 cut(s) 33, 272, 447
BstV2I GAAGAC 1 cut(s) 185
BstX2I RGATCY 1 cut(s) 581
BstYI RGATCY 1 cut(s) 581
BsuRI GGCC 1 cut(s) 554
BtgZI GCGATG 1 cut(s) 104
BtrI CACGTC 1 cut(s) 164
BtsCI GGATG 3 cut(s) 145, 264, 446
BtsI GCAGTG 1 cut(s) 484
BtsIMutI CAGTG 3 cut(s) 348, 453, 484
Cac8I GCNNGC 1 cut(s) 32
CaiI CAGNNNCTG 1 cut(s) 585
Cfr13I GGNCC 2 cut(s) 544, 553
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 25, 275
CviJI RGCY 5 cut(s) 244, 285, 460, 531, 554
CviKI_1 RGCY 5 cut(s) 244, 285, 460, 531, 554
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 532
DpnI GATC 1 cut(s) 583
DpnII GATC 1 cut(s) 581
Eco130I CCWWGG 1 cut(s) 187
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 3 cut(s) 179, 440, 562
Eco72I CACGTG 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 234
EcoT14I CCWWGG 1 cut(s) 187
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 2 cut(s) 28, 278
FaiI YATR 8 cut(s) 26, 101, 134, 276, 280, 282, 391, 434
FatI CATG 2 cut(s) 24, 274
Fnu4HI GCNGC 4 cut(s) 22, 286, 461, 552
FokI GGATG 3 cut(s) 152, 251, 453
Fsp4HI GCNGC 4 cut(s) 22, 286, 461, 552
FspBI CTAG 2 cut(s) 456, 474
GluI GCNGC 4 cut(s) 22, 286, 461, 552
HaeIII GGCC 1 cut(s) 554
HapII CCGG 1 cut(s) 9
Hin1II CATG 2 cut(s) 28, 278
HinfI GANTC 1 cut(s) 223
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 2 cut(s) 30, 145
Hpy188I TCNGA 3 cut(s) 177, 420, 581
Hpy188III TCNNGA 4 cut(s) 71, 167, 229, 438
Hpy8I GTNNAC 2 cut(s) 30, 145
HpyAV CCTTC 3 cut(s) 69, 128, 500
HpyCH4III ACNGT 1 cut(s) 352
HpyCH4IV ACGT 3 cut(s) 130, 152, 163
HpyCH4V TGCA 4 cut(s) 30, 219, 274, 341
HpyF10VI GCNNNNNNNGC 3 cut(s) 27, 457, 560
HpyF3I CTNAG 1 cut(s) 532
HpySE526I ACGT 3 cut(s) 130, 152, 163
Hsp92II CATG 2 cut(s) 28, 278
Kzo9I GATC 1 cut(s) 581
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 8 cut(s) 22, 96, 152, 221, 248, 423, 459, 586
Lsp1109I GCAGC 3 cut(s) 33, 272, 447
MaeI CTAG 2 cut(s) 456, 474
MaeII ACGT 3 cut(s) 130, 152, 163
MalI GATC 1 cut(s) 583
MboI GATC 1 cut(s) 581
MboII GAAGA 3 cut(s) 185, 433, 560
MflI RGATCY 1 cut(s) 581
MhlI GDGCHC 3 cut(s) 32, 453, 484
MluCI AATT 1 cut(s) 123
MluI ACGCGT 1 cut(s) 32
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 5 cut(s) 5, 37, 474, 505, 535
MseI TTAA 1 cut(s) 126
MslI CAYNNNNRTG 2 cut(s) 273, 279
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 236
MvaI CCWGG 1 cut(s) 236
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 3 cut(s) 27, 457, 560
NdeII GATC 1 cut(s) 581
NlaIII CATG 2 cut(s) 28, 278
NlaIV GGNNCC 1 cut(s) 56
NspI RCATGY 2 cut(s) 28, 278
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 4 cut(s) 23, 287, 462, 553
PmaCI CACGTG 1 cut(s) 153
PmlI CACGTG 1 cut(s) 153
Ppu21I YACGTR 1 cut(s) 153
Psp6I CCWGG 1 cut(s) 234
PspCI CACGTG 1 cut(s) 153
PspGI CCWGG 1 cut(s) 234
PspN4I GGNNCC 1 cut(s) 56
PspPI GGNCC 2 cut(s) 544, 553
PsrI GAACNNNNNNTAC 2 cut(s) 313, 345
PstNI CAGNNNCTG 1 cut(s) 585
PsuI RGATCY 1 cut(s) 581
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
RseI CAYNNNNRTG 2 cut(s) 273, 279
SaqAI TTAA 1 cut(s) 126
SatI GCNGC 4 cut(s) 22, 286, 461, 552
Sau3AI GATC 1 cut(s) 581
Sau96I GGNCC 2 cut(s) 544, 553
ScrFI CCNGG 1 cut(s) 236
SduI GDGCHC 3 cut(s) 32, 453, 484
SetI ASST 7 cut(s) 68, 85, 111, 133, 155, 166, 237
SinI GGWCC 1 cut(s) 544
SmiMI CAYNNNNRTG 2 cut(s) 273, 279
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 1 cut(s) 123
SsiI CCGC 1 cut(s) 551
SspMI CTAG 2 cut(s) 456, 474
StyD4I CCNGG 1 cut(s) 234
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 352
TaiI ACGT 3 cut(s) 133, 155, 166
TasI AATT 1 cut(s) 123
TatI WGTACW 1 cut(s) 144
TauI GCSGC 1 cut(s) 554
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 1 cut(s) 126
Tru9I TTAA 1 cut(s) 126
TscAI CASTG 3 cut(s) 355, 453, 484
TseI GCWGC 3 cut(s) 21, 285, 460
TspDTI ATGAA 1 cut(s) 116
TspGWI ACGGA 1 cut(s) 338
TspRI CASTG 3 cut(s) 355, 453, 484
VneI GTGCAC 1 cut(s) 28
VpaK11BI GGWCC 1 cut(s) 544
XceI RCATGY 2 cut(s) 28, 278
XspI CTAG 2 cut(s) 456, 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.