RchiOBHm_Chr2g0167731

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Reverse (-)
82124425 .. 82124634
210 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ53549

Sequence Viewer

Length: 210 bp
ATGGATGCTCAACAGAAGATTTATGTGGAGTGTTTGCCATGGGACAAAGCGTGGAACTTGTTTCAGGAGAAGGTTGGCAAAGACGCACTTCTTATTCATGCAGATATTCCTAAACTTGCTGAATCTGTCGCAAAAGAGTGTGGTGGTTTGCCGCTTGCACTAATTACAGTTGGTCGGATGATGTCTTGCAAGAAGACACCCCAAGAATAG

Protein Analysis

69

Amino Acids

7.7

Weight (kDa)

6.55

Isoelectric Point (pI)

50.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 152
BbsI GAAGAC 1 cut(s) 200
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 200
BsaJI CCNNGG 1 cut(s) 38
BseDI CCNNGG 1 cut(s) 38
BseGI GGATG 2 cut(s) 10, 183
BslFI GGGAC 1 cut(s) 56
BsmFI GGGAC 1 cut(s) 56
Bsp19I CCATGG 1 cut(s) 38
BspACI CCGC 1 cut(s) 152
BssECI CCNNGG 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 38
Bst4CI ACNGT 1 cut(s) 169
BstC8I GCNNGC 1 cut(s) 156
BstDSI CCRYGG 1 cut(s) 38
BstF5I GGATG 2 cut(s) 10, 183
BstV2I GAAGAC 1 cut(s) 200
BtgI CCRYGG 1 cut(s) 38
BtsCI GGATG 2 cut(s) 10, 183
Cac8I GCNNGC 1 cut(s) 156
CseI GACGC 1 cut(s) 92
CviAII CATG 2 cut(s) 39, 98
Eco130I CCWWGG 1 cut(s) 38
EcoT14I CCWWGG 1 cut(s) 38
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 2 cut(s) 42, 101
FaiI YATR 3 cut(s) 24, 40, 99
FalI AAGNNNNNCTT 2 cut(s) 72, 104
FaqI GGGAC 1 cut(s) 56
FatI CATG 2 cut(s) 38, 97
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 2 cut(s) 17, 190
Fsp4HI GCNGC 1 cut(s) 152
GluI GCNGC 1 cut(s) 152
HgaI GACGC 1 cut(s) 92
Hin1II CATG 2 cut(s) 42, 101
HinfI GANTC 1 cut(s) 122
Hpy188I TCNGA 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 65
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4V TGCA 3 cut(s) 101, 158, 189
Hsp92II CATG 2 cut(s) 42, 101
LpnPI CCDG 1 cut(s) 50
MboII GAAGA 2 cut(s) 28, 205
MluCI AATT 1 cut(s) 162
MmeI TCCRAC 1 cut(s) 155
NcoI CCATGG 1 cut(s) 38
NlaIII CATG 2 cut(s) 42, 101
PfeI GAWTC 1 cut(s) 122
PkrI GCNGC 1 cut(s) 153
SatI GCNGC 1 cut(s) 152
SetI ASST 1 cut(s) 75
SgeI CNNG 9 cut(s) 51, 63, 70, 77, 110, 128, 167, 198, 202
Sse9I AATT 1 cut(s) 162
SsiI CCGC 1 cut(s) 152
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 1 cut(s) 169
TasI AATT 1 cut(s) 162
TauI GCSGC 1 cut(s) 154
TfiI GAWTC 1 cut(s) 122
TspDTI ATGAA 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.