RLG00000021749

Belongs to the disease resistance NB-LRR family

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Reverse (-)
77926200 .. 77928277
2078 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000021749

Sequence Viewer

Length: 1833 bp
ATGGGTGACATCTTCACAGTCAACTTATCATGTGATGCCACTGTTTCTCGCTTCTTGGATTCAATTTTTCGACGAGCAGCATATGTTCGTAAGCTCGAAACAAACCTTCAACATCTGAATACTTCCTTCAATGAATTGAAGTGTTTAAAGGATGGCGTAAAGAGAAGGGTTGAGGTTGCTGAGCAGCAGCATCACATGAAGCAGTTAGCGCAAGTACAGAACTGGATTTTAAAGGTGGAGGAATCTATAGAGGCTCAAGTAGAGGAAGCTGTCAACAATAGCACTCAACAAATAGAGAAACTGTGTTGTGGAGGCTGTTGTTCAAAGAACTACATGTCAAGCTACAAGTATGGGAGGAAAGTGGCTAAAATGTTGGTGGAAATCGCTGACTTAAAGAGCAAGGGACTTTTTCCAGAGGTTGCTGAAAAATTGCCCGAACCTCCAATCAGTGAAAGACCTCTTGAGCCAACTGTGGGGTTGGATTCGATGCTTGACAAGGTTTGGAGACACATTGAAGATGAAAAGGTGGGAGTAATTGGTTTATATGGGATGGGAGGGGTCGGCAAGACCAATCTCCTCACCCAAATCCATAACAAATTCCAACACACTGATTTCGATCTTGCAATCTGGATAGTAGTCTCCAAGGACCTCAGACTCGGAGCAATTCAAGATAGAATTGGAGAAAAGATTGGTTTTTCAAAAGACACATGGGAGCTTAAAGATCCAGATGCAAAAGCCGAAGAAATCTCACGCTTCTTGAGCAAAAAAAAGTTTGTGTTATTGTTGGATGATCTATGGGAGCGGGTTGATATAACCAAAATCGGAGTTCCATTTCCTGATCGATACAATAAGTCCAAGCTAGTCTTCACAACTCGTTCTGAGGATGTGTGCGGTATTATGGATGCTCAACAGAAGATTTATGTGGAGTGTCTGCCATGGGACAAAGCGTGGAACTTGTTTCAGGAGAAGGTTGGCAAAGACGCACTTCTTGTTCATGCAGATATTCCTAAACTTGCTGAAGCTGTCGCAAAAGAGTGTGGCGGTTTGCCGCTTGCACTAATTACAGTTGGTCGGATGATGTCTTGCAAGAAGACACCCCAAGAATGGAATCATGCGATCAAAGTATTAAAGAAATTTAGCTCCGAGTTTTCAGGAGAGTGTAATGAAGAAGGTTGTGTAAAAATGCATGATGTTGTTCGTGACATGGCATTGTGGTTGGCTTGTGATCCTAAGAAAGCAGAAGAGAGTTTTCTTGTGCGTGCAGGCGCTGATTTGATTGAAGCACCAATTGCCGAAAAATGGAAGAACTCGAAAAGGGTATCATTGATGGCTAACCACATCAAAGAATTGGTTGAAAAACCAAACTCTCCATATCTGTTGACTTTGTTTCTCAGGAGTAATCATCTGAAAATGATTATTACAGGCTTCTTTGACTCTATGTCTAATCTGCTGGTTTTAGATCTGTCTCGCAATATGGATCTAACCCAACTGCCACTAGGAGTTTCAAGCTTGGTTTCACTACAACATCTCAATTTGTCAAACACTGGTATAAGAGAGTTGCCGATTGAGTTAAAGTGCTTAAAGAGGCTGACATATTTGAATTTTGGGTATACACCGAATCTTGATTCTCTTCCACCAACCATACTATCAAGTTTTGTGATGCTAAAAGTTCTGAGAATGGTACATTCTGGTTCTTCTGATGAATGGAATCATTTTGATGATGAAAAAGTGATGGTAGAGGAATTGCATGGTTTGAAACAGCTGGACTACTTGACTCTCGACATTAGAAGTACCTCTTGTTTCCAAAACTTCGTCAGCAACAAATTAGTGTGA

Protein Analysis

611

Amino Acids

69.3

Weight (kDa)

6.75

Isoelectric Point (pI)

47.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 161 - 327 5.7e-47 NB-ARC domain
LRR_8 PF13855 459 - 516 5e-08 Leucine rich repeat
LRR_14 PF23598 479 - 598 9.6e-10 Leucine-rich repeat region
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000363)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G12210 AT1G12210 AT1G12210 AT1G12220 AT1G12220 AT1G12220 AT1G12280 AT1G12280 AT1G12290 AT1G12290 AT1G12290 AT1G12290 AT1G15890 AT1G15890 AT1G51480 AT1G52660 AT1G52660 AT1G61180 AT1G61180 AT1G61190 AT1G61190 AT1G61190 AT1G61190 AT1G61300 AT1G61300 AT1G61310 AT3G15700 AT3G15700 AT4G10780 AT4G10780 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43730 AT5G43740 AT5G43740 AT5G63020
fragaria_vesca FvH4_6g30050 FvH4_6g48220
malus_domestica MD09G1055800.v1.1 MD09G1198800.v1.1 MD17G1204800.v1.1 MD17G1204900.v1.1 MD17G1205000.v1.1 MD17G1205300.v1.1 MD17G1205700.v1.1 MD17G1205800.v1.1 MD17G1224100.v1.1
prunus_persica Prupe.3G054800_v2.0.a1 Prupe.3G054800_v2.0.a1 Prupe.3G080300_v2.0.a1 Prupe.3G080400_v2.0.a1 Prupe.3G080500_v2.0.a1 Prupe.3G080600_v2.0.a1 Prupe.3G080800_v2.0.a1 Prupe.3G083200_v2.0.a1 Prupe.3G099800_v2.0.a1 Prupe.3G099800_v2.0.a1
pyrus_communis pycom17g20860 pycom17g20910 pycom17g22790
rosa_chinensis RchiOBHm_Chr2g0136891 RchiOBHm_Chr2g0136901 RchiOBHm_Chr2g0167711 RchiOBHm_Chr2g0167721 RchiOBHm_Chr2g0167731 RchiOBHm_Chr4g0407611
rosa_laevigata RLG00000018943 RLG00000019278 RLG00000019282 RLG00000019587 RLG00000021748 RLG00000021749 RLG00000031057
rosa_multiflora Rmu_sc0002143.1_g000003 Rmu_sc0002782.1_g000001 Rmu_sc0023879.1_g000001 Rmu_sc0042171.1_g000001
rosa_roxburghii Rroxscaffold_2G00083300 Rroxscaffold_2G00107890 Rroxscaffold_2G00116680
rosa_rugosa Rorug02G0271700 Rorug02G0334900 Rorug02G0531800 Rorug02G0531800
rosa_samantha Rh2AG359900 Rh2AG385100 Rh2AG600500 Rh2AG600600 Rh2BG392200 Rh2BG611000 Rh2BG611100 Rh2BG611200 Rh2CG343100 Rh2CG343300 Rh2CG372300 Rh2CG581400 Rh2CG581500 Rh2DG382900 Rh2DG623700 Rh5AG027500 Rh5CG029900
rosa_wichuraiana Rw2G031490 Rw2G049850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 802
AccI GTMKAC 1 cut(s) 1610
AciI CCGC 4 cut(s) 802, 891, 1041, 1049
AclWI GGATC 3 cut(s) 716, 1220, 1485
AcsI RAATTY 3 cut(s) 596, 1133, 1600
AcuI CTGAAG 1 cut(s) 1038
AfaI GTAC 3 cut(s) 216, 1683, 1792
AfiI CCNNNNNNNGG 3 cut(s) 473, 1104, 1299
AflIII ACRYGT 1 cut(s) 333
AhdI GACNNNNNGTC 1 cut(s) 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 848, 880
AluBI AGCT 9 cut(s) 94, 269, 342, 715, 859, 1022, 1140, 1509, 1762
AluI AGCT 9 cut(s) 94, 269, 342, 715, 859, 1022, 1140, 1509, 1762
Alw26I GTCTC 3 cut(s) 499, 643, 1470
AlwI GGATC 3 cut(s) 716, 1220, 1485
AlwNI CAGNNNCTG 1 cut(s) 1268
ApeKI GCWGC 3 cut(s) 77, 184, 187
ApoI RAATTY 3 cut(s) 596, 1133, 1600
AspLEI GCGC 2 cut(s) 211, 1268
AspS9I GGNCC 1 cut(s) 646
AsuHPI GGTGA 2 cut(s) 17, 571
AvaII GGWCC 1 cut(s) 646
BbsI GAAGAC 2 cut(s) 856, 1097
BbvI GCAGC 3 cut(s) 89, 196, 199
BccI CCATC 4 cut(s) 146, 544, 1321, 1726
BcoDI GTCTC 3 cut(s) 499, 643, 1470
BfaI CTAG 2 cut(s) 860, 1496
BfmI CTRYAG 1 cut(s) 246
BfoI RGCGCY 1 cut(s) 1269
BglII AGATCT 1 cut(s) 1459
BisI GCNGC 4 cut(s) 78, 185, 188, 1049
BlpI GCTNAGC 1 cut(s) 180
BlsI GCNGC 4 cut(s) 79, 186, 189, 1050
Bme18I GGWCC 1 cut(s) 646
BmeRI GACNNNNNGTC 1 cut(s) 1438
BmgT120I GGNCC 1 cut(s) 646
BmsI GCATC 6 cut(s) 25, 199, 477, 718, 892, 1650
BpiI GAAGAC 2 cut(s) 856, 1097
Bpu1102I GCTNAGC 1 cut(s) 180
BpuEI CTTGAG 3 cut(s) 240, 482, 778
Bsa29I ATCGAT 1 cut(s) 841
BsaBI GATNNNNATC 1 cut(s) 615
BsaJI CCNNGG 2 cut(s) 642, 935
Bsc4I CCNNNNNNNGG 3 cut(s) 473, 1104, 1299
Bse1I ACTGG 2 cut(s) 227, 1549
Bse8I GATNNNNATC 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 841
BseDI CCNNGG 2 cut(s) 642, 935
BseGI GGATG 6 cut(s) 157, 555, 793, 889, 907, 1080
BseJI GATNNNNATC 1 cut(s) 615
BseLI CCNNNNNNNGG 3 cut(s) 473, 1104, 1299
BseMII CTCAG 5 cut(s) 171, 664, 870, 1405, 1664
BseNI ACTGG 2 cut(s) 227, 1549
BseRI GAGGAG 1 cut(s) 566
BseXI GCAGC 3 cut(s) 89, 196, 199
BsgI GTGCAG 1 cut(s) 1281
BshVI ATCGAT 1 cut(s) 841
BslFI GGGAC 2 cut(s) 417, 953
BslI CCNNNNNNNGG 3 cut(s) 473, 1104, 1299
BsmAI GTCTC 3 cut(s) 499, 643, 1470
BsmFI GGGAC 2 cut(s) 417, 953
Bsp143I GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
Bsp1720I GCTNAGC 1 cut(s) 180
Bsp19I CCATGG 1 cut(s) 935
BspACI CCGC 4 cut(s) 802, 891, 1041, 1049
BspCNI CTCAG 5 cut(s) 172, 663, 871, 1404, 1665
BspDI ATCGAT 1 cut(s) 841
BspPI GGATC 3 cut(s) 716, 1220, 1485
BsrBI CCGCTC 1 cut(s) 802
BsrI ACTGG 2 cut(s) 227, 1549
BssECI CCNNGG 2 cut(s) 642, 935
BssMI GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
BssNAI GTATAC 1 cut(s) 1611
BssT1I CCWWGG 2 cut(s) 642, 935
Bst1107I GTATAC 1 cut(s) 1611
Bst4CI ACNGT 5 cut(s) 19, 43, 303, 472, 1066
Bst6I CTCTTC 2 cut(s) 1236, 1635
BstAPI GCANNNNNTGC 1 cut(s) 1289
BstC8I GCNNGC 3 cut(s) 1053, 1260, 1264
BstDEI CTNAG 6 cut(s) 180, 650, 879, 1230, 1391, 1673
BstDSI CCRYGG 1 cut(s) 935
BstF5I GGATG 6 cut(s) 157, 555, 793, 889, 907, 1080
BstH2I RGCGCY 1 cut(s) 1269
BstHHI GCGC 2 cut(s) 211, 1268
BstKTI GATC 8 cut(s) 619, 724, 793, 841, 1119, 1228, 1462, 1480
BstMAI GTCTC 3 cut(s) 499, 643, 1470
BstMBI GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
BstMWI GCNNNNNNNGC 3 cut(s) 208, 759, 1289
BstNSI RCATGY 1 cut(s) 337
BstSFI CTRYAG 1 cut(s) 246
BstV1I GCAGC 3 cut(s) 89, 196, 199
BstV2I GAAGAC 2 cut(s) 856, 1097
BstX2I RGATCY 3 cut(s) 721, 1459, 1477
BstYI RGATCY 3 cut(s) 721, 1459, 1477
BstZ17I GTATAC 1 cut(s) 1611
Bsu15I ATCGAT 1 cut(s) 841
BsuTUI ATCGAT 1 cut(s) 841
BtgI CCRYGG 1 cut(s) 935
BtsCI GGATG 6 cut(s) 157, 555, 793, 889, 907, 1080
BtsIMutI CAGTG 4 cut(s) 39, 454, 606, 1542
Cac8I GCNNGC 3 cut(s) 1053, 1260, 1264
CaiI CAGNNNCTG 1 cut(s) 1268
CfoI GCGC 2 cut(s) 211, 1268
Cfr13I GGNCC 1 cut(s) 646
ClaI ATCGAT 1 cut(s) 841
CseI GACGC 1 cut(s) 989
Csp6I GTAC 3 cut(s) 215, 1682, 1791
CviQI GTAC 3 cut(s) 215, 1682, 1791
DdeI CTNAG 6 cut(s) 180, 650, 879, 1230, 1391, 1673
DpnI GATC 8 cut(s) 618, 723, 792, 840, 1118, 1227, 1461, 1479
DpnII GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
DraI TTTAAA 2 cut(s) 147, 231
DriI GACNNNNNGTC 1 cut(s) 1438
Eam1104I CTCTTC 2 cut(s) 1236, 1635
Eam1105I GACNNNNNGTC 1 cut(s) 1438
EarI CTCTTC 2 cut(s) 1236, 1635
Eco130I CCWWGG 2 cut(s) 642, 935
Eco47I GGWCC 1 cut(s) 646
Eco57I CTGAAG 1 cut(s) 1038
EcoO109I RGGNCCY 1 cut(s) 646
EcoT14I CCWWGG 2 cut(s) 642, 935
EcoT22I ATGCAT 1 cut(s) 1188
ErhI CCWWGG 2 cut(s) 642, 935
FalI AAGNNNNNCTT 6 cut(s) 848, 880, 969, 1001, 1780, 1812
FaqI GGGAC 2 cut(s) 417, 953
FauI CCCGC 1 cut(s) 795
FauNDI CATATG 1 cut(s) 82
FblI GTMKAC 1 cut(s) 1610
Fnu4HI GCNGC 4 cut(s) 78, 185, 188, 1049
FokI GGATG 6 cut(s) 164, 562, 800, 896, 914, 1087
Fsp4HI GCNGC 4 cut(s) 78, 185, 188, 1049
FspBI CTAG 2 cut(s) 860, 1496
GlaI GCGC 2 cut(s) 210, 1267
GluI GCNGC 4 cut(s) 78, 185, 188, 1049
HaeII RGCGCY 1 cut(s) 1269
HgaI GACGC 1 cut(s) 989
HhaI GCGC 2 cut(s) 211, 1268
Hin6I GCGC 2 cut(s) 209, 1266
HinP1I GCGC 2 cut(s) 209, 1266
HincII GTYRAC 3 cut(s) 22, 274, 1380
HindII GTYRAC 3 cut(s) 22, 274, 1380
HindIII AAGCTT 1 cut(s) 1507
HphI GGTGA 2 cut(s) 17, 571
Hpy166II GTNNAC 4 cut(s) 22, 274, 1380, 1611
Hpy8I GTNNAC 4 cut(s) 22, 274, 1380, 1611
Hpy99I CGWCG 1 cut(s) 75
HpyAV CCTTC 5 cut(s) 116, 136, 159, 961, 1163
HpyCH4III ACNGT 5 cut(s) 19, 43, 303, 472, 1066
HpyCH4V TGCA 8 cut(s) 623, 731, 998, 1055, 1086, 1186, 1262, 1747
HpyF10VI GCNNNNNNNGC 3 cut(s) 208, 759, 1289
HpyF3I CTNAG 6 cut(s) 180, 650, 879, 1230, 1391, 1673
HspAI GCGC 2 cut(s) 209, 1266
Kzo9I GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
LmnI GCTCC 4 cut(s) 659, 712, 799, 1145
Lsp1109I GCAGC 3 cut(s) 89, 196, 199
LweI GCATC 6 cut(s) 25, 199, 477, 718, 892, 1650
MaeI CTAG 2 cut(s) 860, 1496
MaeIII GTNAC 2 cut(s) 5, 1199
MalI GATC 8 cut(s) 618, 723, 792, 840, 1118, 1227, 1461, 1479
MbiI CCGCTC 1 cut(s) 802
MboI GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
MfeI CAATTG 1 cut(s) 1287
MflI RGATCY 3 cut(s) 721, 1459, 1477
MlyI GAGTC 3 cut(s) 648, 1427, 1768
MmeI TCCRAC 4 cut(s) 459, 625, 765, 1052
Mph1103I ATGCAT 1 cut(s) 1188
MseI TTAA 7 cut(s) 146, 230, 392, 717, 1127, 1571, 1580
MslI CAYNNNNRTG 1 cut(s) 1716
MspA1I CMGCKG 1 cut(s) 1762
MunI CAATTG 1 cut(s) 1287
MwoI GCNNNNNNNGC 3 cut(s) 208, 759, 1289
NcoI CCATGG 1 cut(s) 935
NdeI CATATG 1 cut(s) 82
NdeII GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
NmuCI GTSAC 2 cut(s) 5, 1199
NsiI ATGCAT 1 cut(s) 1188
NspI RCATGY 1 cut(s) 337
PciI ACATGT 1 cut(s) 333
PfeI GAWTC 7 cut(s) 59, 242, 482, 1108, 1618, 1625, 1708
PkrI GCNGC 4 cut(s) 79, 186, 189, 1050
PleI GAGTC 3 cut(s) 648, 1427, 1768
PpsI GAGTC 3 cut(s) 648, 1427, 1768
PpuMI RGGWCCY 1 cut(s) 646
PscI ACATGT 1 cut(s) 333
Psp5II RGGWCCY 1 cut(s) 646
PspPI GGNCC 1 cut(s) 646
PspPPI RGGWCCY 1 cut(s) 646
PstNI CAGNNNCTG 1 cut(s) 1268
PsuI RGATCY 3 cut(s) 721, 1459, 1477
PvuII CAGCTG 1 cut(s) 1762
RsaI GTAC 3 cut(s) 216, 1683, 1792
RsaNI GTAC 3 cut(s) 215, 1682, 1791
RseI CAYNNNNRTG 1 cut(s) 1716
SaqAI TTAA 7 cut(s) 146, 230, 392, 717, 1127, 1571, 1580
SatI GCNGC 4 cut(s) 78, 185, 188, 1049
Sau3AI GATC 8 cut(s) 616, 721, 790, 838, 1116, 1225, 1459, 1477
Sau96I GGNCC 1 cut(s) 646
SchI GAGTC 3 cut(s) 648, 1427, 1768
SfaNI GCATC 6 cut(s) 25, 199, 477, 718, 892, 1650
SfcI CTRYAG 1 cut(s) 246
SinI GGWCC 1 cut(s) 646
SmiMI CAYNNNNRTG 1 cut(s) 1716
SmlI CTYRAG 3 cut(s) 255, 461, 757
SmoI CTYRAG 3 cut(s) 255, 461, 757
SsiI CCGC 4 cut(s) 802, 891, 1041, 1049
SspMI CTAG 2 cut(s) 860, 1496
StyI CCWWGG 2 cut(s) 642, 935
TaaI ACNGT 5 cut(s) 19, 43, 303, 472, 1066
TaqI TCGA 7 cut(s) 70, 96, 485, 615, 841, 1310, 1779
TatI WGTACW 1 cut(s) 214
TauI GCSGC 1 cut(s) 1051
TfiI GAWTC 7 cut(s) 59, 242, 482, 1108, 1618, 1625, 1708
Tru1I TTAA 7 cut(s) 146, 230, 392, 717, 1127, 1571, 1580
Tru9I TTAA 7 cut(s) 146, 230, 392, 717, 1127, 1571, 1580
TscAI CASTG 4 cut(s) 46, 454, 613, 1549
TseFI GTSAC 2 cut(s) 5, 1199
TseI GCWGC 3 cut(s) 77, 184, 187
Tsp45I GTSAC 2 cut(s) 5, 1199
TspDTI ATGAA 7 cut(s) 147, 212, 534, 983, 1179, 1716, 1737
TspRI CASTG 4 cut(s) 46, 454, 613, 1549
VpaK11BI GGWCC 1 cut(s) 646
XapI RAATTY 3 cut(s) 596, 1133, 1600
XceI RCATGY 1 cut(s) 337
XmiI GTMKAC 1 cut(s) 1610
XspI CTAG 2 cut(s) 860, 1496
Zsp2I ATGCAT 1 cut(s) 1188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.