AT1G13080

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4459002 .. 4460996
1995 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13080.1

Sequence Viewer

Length: 1509 bp
ATGACGATCTTGCTCTGTTTCTTCTTAGTTTCACTTCTTACTATCGTATCATCAATCTTTCTTAAACAGAATAAAACCTCAAAATTCAATCTTCCCCCAAGCCCTTCAAGCCTTCCGATCATTGGAAACTTACACCATCTCGCAGGATTGCCTCACAGATGTTTTCATAAGCTCTCTATCAAATACGGACCCTTGGTCTTTCTTCGTCTCGGGTCTGTTCCGGTTGTTGTGATCTCATCGAGTGAAGCAGCTGAAGCAGTTCTCAAAACCAATGACTTGGAATGTTGCAGCCGACCAAAGACGGTGGGGAGCGGAAAACTCTCTTACGGTTTCAAAGACATCACTTTCGCACCATACGGTGAGTATTGGCGAGAAGTGCGAAAACTCGCGGTTATCGAGCTTTTTAGCTCTAAAAAGGTTCAATCTTTCAGGTATATAAGAGAGGAAGAGGTCGACTTCGTGGTCAAGAAAGTGTCAGAATCAGCTTTGAAGCAATCTCCTGTGGATTTAAGCAAAACCTTTTTCTCCCTCACCGCTAGTATCATTTGTAGAGTCGCCTTAGGACAGAATTTCAATGAAAGCGGCTTTGTTATCGATCAAGACAGGATCGAAGAACTTGTTACCGAATCAGCAGAAGCTCTAGGGACTTTCACTTTCTCTGACTTCTTCCCTGGTGGACTTGGAAGATTTGTAGATTGGTTGTTTCAACGACACAAGAAGATCAACAAAGTCTTTAAGGAACTTGATGCTTTTTATCAGCATGTGATTGATGATCACTTGAAGCCAGAGGGAAGAAAGAATCAAGATATTGTCACCTTGATTTTGGATATGATCGATAAACAAGAAGATTCAGATTCTTTCAAACTCAACATGGATAATCTCAAGGCAATTGTCATGGATGTATTTCTCGCGGGGATAGATACAAGCGCGGTAACAATGATTTGGGCGATGACAGAACTTATTAGAAACCCTAGAGTGATGAAGAAGGCTCAAGAAAGTATTCGAACCACTCTGGGTCTCAAGAAGGAAAGAATCACTGAAGAAGATTTAGGCAAAGTTGAGTATTTGAACCACATACTCAAGGAAACTTTTAGGTTACACCCGGCACTTCCATTTGTGGTGCCAAGGGAAACAATGTCTCACATCAAGATCCAAGGCTATGATATTCCACCGAAAACACAAATCCAGCTTAACGTGTGGACGATCGGACGTGACCCTAAGCGTTGGAATGACCCTGAAGAATTCAACCCTGAAAGGTTTGCAAATAGCTCTGTAGATTTTAGAGGACAACATTTTGACCTATTACCGTTTGGTTCTGGTCGAAGGATTTGTCCCGGAATGCCAATGGCGATTGCTAGTGTGGAACTAGCATTGATGAATTTGCTTTATTATTTTGATTGGAGTATGCCTGATGGGACTAAAGGTGAAGACATTGATATGGAAGAAGCTGGTAATATCTCTATTGTCAAGAAAATACCTCTTCAACTTGTGCCTGTTCAACGTTATTGA

Protein Analysis

502

Amino Acids

57.14

Weight (kDa)

7.17

Isoelectric Point (pI)

43.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 487 9.8e-104 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 1120
AccBSI CCGCTC 1 cut(s) 312
AccI GTMKAC 1 cut(s) 453
AccII CGCG 3 cut(s) 389, 911, 929
AciI CCGC 6 cut(s) 312, 389, 534, 582, 911, 929
AclI AACGTT 1 cut(s) 1501
AclWI GGATC 2 cut(s) 614, 1144
AcsI RAATTY 4 cut(s) 83, 568, 1241, 1378
AcuI CTGAAG 3 cut(s) 273, 1059, 1257
AfiI CCNNNNNNNGG 1 cut(s) 122
AflIII ACRYGT 1 cut(s) 1194
AhdI GACNNNNNGTC 1 cut(s) 194
AjiI CACGTC 1 cut(s) 1211
AjnI CCWGG 1 cut(s) 670
AluBI AGCT 9 cut(s) 172, 251, 400, 408, 485, 638, 1189, 1269, 1448
AluI AGCT 9 cut(s) 172, 251, 400, 408, 485, 638, 1189, 1269, 1448
Alw26I GTCTC 3 cut(s) 212, 1022, 1143
AlwI GGATC 2 cut(s) 614, 1144
Ama87I CYCGRG 1 cut(s) 209
ApeKI GCWGC 2 cut(s) 248, 288
ApoI RAATTY 4 cut(s) 83, 568, 1241, 1378
ArsI GACNNNNNNTTYG 4 cut(s) 329, 361, 1315, 1347
Asp700I GAANNNNTTC 2 cut(s) 258, 999
AspLEI GCGC 1 cut(s) 929
AspS9I GGNCC 1 cut(s) 188
AsuC2I CCSGG 2 cut(s) 1103, 1335
AsuHPI GGTGA 4 cut(s) 371, 523, 805, 1436
AsuII TTCGAA 1 cut(s) 1003
AvaI CYCGRG 1 cut(s) 209
AvaII GGWCC 1 cut(s) 188
AxyI CCTNAGG 1 cut(s) 559
BaeI ACNNNNGTAYC 2 cut(s) 30, 63
BanI GGYRCC 1 cut(s) 1120
BbsI GAAGAC 1 cut(s) 1434
BbvI GCAGC 2 cut(s) 260, 300
BccI CCATC 2 cut(s) 144, 1406
BciT130I CCWGG 1 cut(s) 672
BclI TGATCA 1 cut(s) 772
BcnI CCSGG 2 cut(s) 1103, 1335
BcoDI GTCTC 3 cut(s) 212, 1022, 1143
BfaI CTAG 5 cut(s) 537, 641, 972, 1356, 1367
BfmI CTRYAG 1 cut(s) 1272
BisI GCNGC 3 cut(s) 249, 289, 583
BlsI GCNGC 3 cut(s) 250, 290, 584
Bme1390I CCNGG 3 cut(s) 672, 1103, 1335
Bme18I GGWCC 1 cut(s) 188
BmeRI GACNNNNNGTC 1 cut(s) 194
BmeT110I CYCGRG 1 cut(s) 209
BmgBI CACGTC 1 cut(s) 1211
BmgT120I GGNCC 1 cut(s) 188
BmiI GGNNCC 2 cut(s) 190, 1122
BmrFI CCNGG 3 cut(s) 672, 1103, 1335
BmsI GCATC 1 cut(s) 736
BpiI GAAGAC 1 cut(s) 1434
Bpu10I CCTNAGC 1 cut(s) 1218
Bpu14I TTCGAA 1 cut(s) 1003
BpuEI CTTGAG 4 cut(s) 866, 975, 1004, 1064
BpuMI CCSGG 2 cut(s) 1103, 1335
Bsa29I ATCGAT 2 cut(s) 594, 834
BsaI GGTCTC 1 cut(s) 1022
BsaJI CCNNGG 4 cut(s) 192, 670, 1124, 1153
BsaWI WCCGGW 1 cut(s) 220
Bsc4I CCNNNNNNNGG 1 cut(s) 122
Bse21I CCTNAGG 1 cut(s) 559
BseBI CCWGG 1 cut(s) 672
BseCI ATCGAT 2 cut(s) 594, 834
BseDI CCNNGG 4 cut(s) 192, 670, 1124, 1153
BseGI GGATG 1 cut(s) 904
BseLI CCNNNNNNNGG 1 cut(s) 122
BseXI GCAGC 2 cut(s) 260, 300
Bsh1236I CGCG 3 cut(s) 389, 911, 929
Bsh1285I CGRYCG 1 cut(s) 1206
BshNI GGYRCC 1 cut(s) 1120
BshVI ATCGAT 2 cut(s) 594, 834
BsiEI CGRYCG 1 cut(s) 1206
BsiHKCI CYCGRG 1 cut(s) 209
BsiSI CCGG 3 cut(s) 221, 1103, 1335
BslFI GGGAC 3 cut(s) 658, 1317, 1429
BslI CCNNNNNNNGG 1 cut(s) 122
BsmAI GTCTC 3 cut(s) 212, 1022, 1143
BsmBI CGTCTC 1 cut(s) 212
BsmFI GGGAC 3 cut(s) 658, 1317, 1429
BsmI GAATGC 1 cut(s) 1344
Bso31I GGTCTC 1 cut(s) 1022
BsoBI CYCGRG 1 cut(s) 209
Bsp119I TTCGAA 1 cut(s) 1003
BspACI CCGC 6 cut(s) 312, 389, 534, 582, 911, 929
BspDI ATCGAT 2 cut(s) 594, 834
BspFNI CGCG 3 cut(s) 389, 911, 929
BspLI GGNNCC 2 cut(s) 190, 1122
BspPI GGATC 2 cut(s) 614, 1144
BspT104I TTCGAA 1 cut(s) 1003
BspT107I GGYRCC 1 cut(s) 1120
BspTNI GGTCTC 1 cut(s) 1022
BsrBI CCGCTC 1 cut(s) 312
BssECI CCNNGG 4 cut(s) 192, 670, 1124, 1153
BssT1I CCWWGG 3 cut(s) 192, 1124, 1153
Bst2UI CCWGG 1 cut(s) 672
Bst4CI ACNGT 4 cut(s) 304, 329, 359, 1308
Bst6I CTCTTC 2 cut(s) 441, 1485
BstBI TTCGAA 1 cut(s) 1003
BstDEI CTNAG 3 cut(s) 25, 559, 1218
BstF5I GGATG 1 cut(s) 904
BstFNI CGCG 3 cut(s) 389, 911, 929
BstHHI GCGC 1 cut(s) 929
BstMAI GTCTC 3 cut(s) 212, 1022, 1143
BstMCI CGRYCG 1 cut(s) 1206
BstMWI GCNNNNNNNGC 3 cut(s) 108, 254, 376
BstNI CCWGG 1 cut(s) 672
BstNSI RCATGY 1 cut(s) 764
BstSCI CCNGG 3 cut(s) 670, 1101, 1333
BstSFI CTRYAG 1 cut(s) 1272
BstUI CGCG 3 cut(s) 389, 911, 929
BstV1I GCAGC 2 cut(s) 260, 300
BstV2I GAAGAC 1 cut(s) 1434
BstX2I RGATCY 1 cut(s) 1149
BstXI CCANNNNNNTGG 1 cut(s) 277
BstYI RGATCY 1 cut(s) 1149
Bsu15I ATCGAT 2 cut(s) 594, 834
Bsu36I CCTNAGG 1 cut(s) 559
BsuTUI ATCGAT 2 cut(s) 594, 834
BtgZI GCGATG 1 cut(s) 962
BtrI CACGTC 1 cut(s) 1211
BtsCI GGATG 1 cut(s) 904
BtsIMutI CAGTG 1 cut(s) 1035
CfoI GCGC 1 cut(s) 929
Cfr13I GGNCC 1 cut(s) 188
ClaI ATCGAT 2 cut(s) 594, 834
CspCI CAANNNNNGTGG 2 cut(s) 285, 320
CviAII CATG 3 cut(s) 761, 871, 895
DdeI CTNAG 3 cut(s) 25, 559, 1218
DrdI GACNNNNNNGTC 1 cut(s) 461
DriI GACNNNNNGTC 1 cut(s) 194
DseDI GACNNNNNNGTC 1 cut(s) 461
Eam1104I CTCTTC 2 cut(s) 441, 1485
Eam1105I GACNNNNNGTC 1 cut(s) 194
EarI CTCTTC 2 cut(s) 441, 1485
Eco130I CCWWGG 3 cut(s) 192, 1124, 1153
Eco31I GGTCTC 1 cut(s) 1022
Eco47I GGWCC 1 cut(s) 188
Eco57I CTGAAG 3 cut(s) 273, 1059, 1257
Eco81I CCTNAGG 1 cut(s) 559
Eco88I CYCGRG 1 cut(s) 209
EcoRI GAATTC 1 cut(s) 1241
EcoRII CCWGG 1 cut(s) 670
EcoT14I CCWWGG 3 cut(s) 192, 1124, 1153
ErhI CCWWGG 3 cut(s) 192, 1124, 1153
Esp3I CGTCTC 1 cut(s) 212
FaeI CATG 3 cut(s) 764, 874, 898
FaqI GGGAC 3 cut(s) 658, 1317, 1429
FatI CATG 3 cut(s) 760, 870, 894
FauI CCCGC 1 cut(s) 904
FbaI TGATCA 1 cut(s) 772
FblI GTMKAC 1 cut(s) 453
Fnu4HI GCNGC 3 cut(s) 249, 289, 583
FokI GGATG 1 cut(s) 911
Fsp4HI GCNGC 3 cut(s) 249, 289, 583
FspBI CTAG 5 cut(s) 537, 641, 972, 1356, 1367
GlaI GCGC 1 cut(s) 928
GluI GCNGC 3 cut(s) 249, 289, 583
HapII CCGG 3 cut(s) 221, 1103, 1335
HhaI GCGC 1 cut(s) 929
Hin1II CATG 3 cut(s) 764, 874, 898
Hin6I GCGC 1 cut(s) 927
HinP1I GCGC 1 cut(s) 927
HincII GTYRAC 1 cut(s) 454
HindII GTYRAC 1 cut(s) 454
HinfI GANTC 7 cut(s) 479, 552, 626, 799, 848, 854, 1032
HpaII CCGG 3 cut(s) 221, 1103, 1335
HphI GGTGA 4 cut(s) 371, 523, 805, 1436
Hpy166II GTNNAC 3 cut(s) 454, 677, 1200
Hpy188I TCNGA 5 cut(s) 117, 478, 661, 853, 1208
Hpy188III TCNNGA 7 cut(s) 466, 599, 803, 992, 1021, 1147, 1468
Hpy8I GTNNAC 3 cut(s) 454, 677, 1200
HpyAV CCTTC 5 cut(s) 114, 122, 979, 1018, 1317
HpyCH4III ACNGT 4 cut(s) 304, 329, 359, 1308
HpyCH4IV ACGT 3 cut(s) 1194, 1210, 1501
HpyCH4V TGCA 2 cut(s) 288, 1262
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 254, 376
HpyF3I CTNAG 3 cut(s) 25, 559, 1218
HpySE526I ACGT 3 cut(s) 1194, 1210, 1501
Hsp92II CATG 3 cut(s) 764, 874, 898
HspAI GCGC 1 cut(s) 927
Ksp22I TGATCA 1 cut(s) 772
LmnI GCTCC 1 cut(s) 309
Lsp1109I GCAGC 2 cut(s) 260, 300
LweI GCATC 1 cut(s) 736
MaeI CTAG 5 cut(s) 537, 641, 972, 1356, 1367
MaeII ACGT 3 cut(s) 1194, 1210, 1501
MaeIII GTNAC 5 cut(s) 619, 811, 931, 1095, 1211
MbiI CCGCTC 1 cut(s) 312
MfeI CAATTG 1 cut(s) 888
MflI RGATCY 1 cut(s) 1149
MluCI AATT 5 cut(s) 83, 568, 888, 1241, 1378
MlyI GAGTC 1 cut(s) 561
MmeI TCCRAC 1 cut(s) 1205
MnlI CCTC 8 cut(s) 88, 162, 436, 442, 539, 781, 1277, 1488
MroXI GAANNNNTTC 2 cut(s) 258, 999
MseI TTAA 4 cut(s) 63, 509, 735, 1191
MslI CAYNNNNRTG 1 cut(s) 1436
MspA1I CMGCKG 1 cut(s) 251
MspI CCGG 3 cut(s) 221, 1103, 1335
MspR9I CCNGG 3 cut(s) 672, 1103, 1335
MunI CAATTG 1 cut(s) 888
Mva1269I GAATGC 1 cut(s) 1344
MvaI CCWGG 1 cut(s) 672
MvnI CGCG 3 cut(s) 389, 911, 929
MwoI GCNNNNNNNGC 3 cut(s) 108, 254, 376
NciI CCSGG 2 cut(s) 1103, 1335
NlaIII CATG 3 cut(s) 764, 874, 898
NlaIV GGNNCC 2 cut(s) 190, 1122
NmuCI GTSAC 2 cut(s) 811, 1211
NspI RCATGY 1 cut(s) 764
NspV TTCGAA 1 cut(s) 1003
PcsI WCGNNNNNNNCGW 1 cut(s) 393
PctI GAATGC 1 cut(s) 1344
PdmI GAANNNNTTC 2 cut(s) 258, 999
PfeI GAWTC 6 cut(s) 479, 626, 799, 848, 854, 1032
PfoI TCCNGGA 1 cut(s) 1333
PkrI GCNGC 3 cut(s) 250, 290, 584
Ple19I CGATCG 1 cut(s) 1206
PleI GAGTC 1 cut(s) 560
PpsI GAGTC 1 cut(s) 560
Psp1406I AACGTT 1 cut(s) 1501
Psp6I CCWGG 1 cut(s) 670
PspGI CCWGG 1 cut(s) 670
PspN4I GGNNCC 2 cut(s) 190, 1122
PspPI GGNCC 1 cut(s) 188
PsuI RGATCY 1 cut(s) 1149
PvuI CGATCG 1 cut(s) 1206
PvuII CAGCTG 1 cut(s) 251
RseI CAYNNNNRTG 1 cut(s) 1436
SalI GTCGAC 1 cut(s) 452
SaqAI TTAA 4 cut(s) 63, 509, 735, 1191
SatI GCNGC 3 cut(s) 249, 289, 583
Sau96I GGNCC 1 cut(s) 188
SchI GAGTC 1 cut(s) 561
ScrFI CCNGG 3 cut(s) 672, 1103, 1335
SfaNI GCATC 1 cut(s) 736
SfcI CTRYAG 1 cut(s) 1272
SfuI TTCGAA 1 cut(s) 1003
SinI GGWCC 1 cut(s) 188
SmiMI CAYNNNNRTG 1 cut(s) 1436
SmlI CTYRAG 4 cut(s) 881, 990, 1019, 1079
SmoI CTYRAG 4 cut(s) 881, 990, 1019, 1079
Sse9I AATT 5 cut(s) 83, 568, 888, 1241, 1378
SsiI CCGC 6 cut(s) 312, 389, 534, 582, 911, 929
SspMI CTAG 5 cut(s) 537, 641, 972, 1356, 1367
StyD4I CCNGG 3 cut(s) 670, 1101, 1333
StyI CCWWGG 3 cut(s) 192, 1124, 1153
TaaI ACNGT 4 cut(s) 304, 329, 359, 1308
TaiI ACGT 3 cut(s) 1197, 1213, 1504
TaqI TCGA 8 cut(s) 239, 396, 453, 594, 609, 834, 1003, 1321
TasI AATT 5 cut(s) 83, 568, 888, 1241, 1378
TauI GCSGC 1 cut(s) 585
TfiI GAWTC 6 cut(s) 479, 626, 799, 848, 854, 1032
Tru1I TTAA 4 cut(s) 63, 509, 735, 1191
Tru9I TTAA 4 cut(s) 63, 509, 735, 1191
TscAI CASTG 1 cut(s) 1042
TseFI GTSAC 2 cut(s) 811, 1211
TseI GCWGC 2 cut(s) 248, 288
Tsp45I GTSAC 2 cut(s) 811, 1211
TspDTI ATGAA 4 cut(s) 155, 591, 995, 1391
TspGWI ACGGA 1 cut(s) 201
TspRI CASTG 1 cut(s) 1042
VpaK11BI GGWCC 1 cut(s) 188
XapI RAATTY 4 cut(s) 83, 568, 1241, 1378
XceI RCATGY 1 cut(s) 764
XmiI GTMKAC 1 cut(s) 453
XmnI GAANNNNTTC 2 cut(s) 258, 999
XspI CTAG 5 cut(s) 537, 641, 972, 1356, 1367
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.