Rorug04G0261600

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0000354
Physical Location & Seq
Reverse (-)
43351929 .. 43353692
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0261600.1

Sequence Viewer

Length: 507 bp
ATGTTGGTTTACCAGGACCTCCTCACCGGTGATGAGCTTCTCTCGGACTCGTTTCCATACAAAGAGATCCACAATGGAGTATTGTGGGAAGTTGACGGAAAGTGGGTTGTTCAAGGAGCAGTTGATGTAGACATCGGTGCAAATCCTTCTGCTGAAGGTGCAGATGCTGATGAGGGTGTTGATGATCAAACTGCTAAGGTGGTTGACATTGTCGACACTTTCAGACTTCAGGAGCAACCTCCTTTTGATAAGAAGCAGTTTGTCACATGGGTGAAGAGGTACATCAAATTGTTGACCCCAAAGCTTGAGGGAGAGCATCAGGAGACATTTAAGAAGAACATTGAGGGAGCAACCAAGTTTCTGCTTTCCAAGCTCAGTGACCTCCAATTCTTCGTGGGGGAGAGCATGGGTGATGATGCAGCTTTGGTCTTTGCCTACTACAAAGAGGGTGCCACTGACCCAACCTTTATTTACTTCGCCCATGGTTTGAAGGAGGTCAAGTGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

168

Amino Acids

18.87

Weight (kDa)

4.54

Isoelectric Point (pI)

19.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TCTP PF00838 1 - 164 1e-57 Translationally controlled tumour protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 449
AccI GTMKAC 2 cut(s) 129, 213
AclWI GGATC 1 cut(s) 61
AcuI CTGAAG 2 cut(s) 174, 212
AfaI GTAC 1 cut(s) 281
AgeI ACCGGT 1 cut(s) 26
AgsI TTSAA 2 cut(s) 113, 490
AjnI CCWGG 1 cut(s) 12
AleI CACNNNNGTG 1 cut(s) 269
AluBI AGCT 4 cut(s) 37, 304, 373, 422
AluI AGCT 4 cut(s) 37, 304, 373, 422
Alw26I GTCTC 1 cut(s) 317
AlwI GGATC 1 cut(s) 61
AlwNI CAGNNNCTG 1 cut(s) 167
ApeKI GCWGC 1 cut(s) 419
AsiGI ACCGGT 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 16
AsuHPI GGTGA 4 cut(s) 16, 41, 283, 422
AvaII GGWCC 1 cut(s) 16
BanI GGYRCC 1 cut(s) 449
BbvI GCAGC 1 cut(s) 431
BciT130I CCWGG 1 cut(s) 14
BclI TGATCA 1 cut(s) 184
BcoDI GTCTC 1 cut(s) 317
BisI GCNGC 1 cut(s) 420
BlsI GCNGC 1 cut(s) 421
Bme1390I CCNGG 1 cut(s) 14
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 451
BmrFI CCNGG 1 cut(s) 14
BmsI GCATC 3 cut(s) 154, 325, 406
BplI GAGNNNNNCTC 2 cut(s) 26, 58
Bpu10I CCTNAGC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 326
BsaJI CCNNGG 1 cut(s) 481
BsaWI WCCGGW 1 cut(s) 26
BsaXI ACNNNNNCTCC 1 cut(s) 485
Bse118I RCCGGY 1 cut(s) 26
BseBI CCWGG 1 cut(s) 14
BseDI CCNNGG 1 cut(s) 481
BseMII CTCAG 1 cut(s) 388
BseRI GAGGAG 1 cut(s) 11
BseXI GCAGC 1 cut(s) 431
BsgI GTGCAG 1 cut(s) 180
BshNI GGYRCC 1 cut(s) 449
BshTI ACCGGT 1 cut(s) 26
BsiSI CCGG 1 cut(s) 27
BsmAI GTCTC 1 cut(s) 317
Bsp143I GATC 2 cut(s) 66, 184
Bsp19I CCATGG 1 cut(s) 481
BspCNI CTCAG 1 cut(s) 387
BspLI GGNNCC 1 cut(s) 451
BspPI GGATC 1 cut(s) 61
BspT107I GGYRCC 1 cut(s) 449
BsrFI RCCGGY 1 cut(s) 26
BssAI RCCGGY 1 cut(s) 26
BssECI CCNNGG 1 cut(s) 481
BssMI GATC 2 cut(s) 66, 184
BssT1I CCWWGG 1 cut(s) 481
Bst2UI CCWGG 1 cut(s) 14
Bst6I CTCTTC 1 cut(s) 269
BstDEI CTNAG 2 cut(s) 195, 374
BstDSI CCRYGG 1 cut(s) 481
BstKTI GATC 2 cut(s) 69, 187
BstMAI GTCTC 1 cut(s) 317
BstMBI GATC 2 cut(s) 66, 184
BstMWI GCNNNNNNNGC 2 cut(s) 158, 370
BstNI CCWGG 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 12
BstV1I GCAGC 1 cut(s) 431
BstX2I RGATCY 1 cut(s) 66
BstYI RGATCY 1 cut(s) 66
BtgI CCRYGG 1 cut(s) 481
BtsIMutI CAGTG 2 cut(s) 382, 453
CaiI CAGNNNCTG 1 cut(s) 167
Cfr10I RCCGGY 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 280
CspAI ACCGGT 1 cut(s) 26
CviAII CATG 3 cut(s) 267, 406, 482
CviJI RGCY 4 cut(s) 37, 304, 373, 422
CviKI_1 RGCY 4 cut(s) 37, 304, 373, 422
CviQI GTAC 1 cut(s) 280
DdeI CTNAG 2 cut(s) 195, 374
DpnI GATC 2 cut(s) 68, 186
DpnII GATC 2 cut(s) 66, 184
Eam1104I CTCTTC 1 cut(s) 269
EarI CTCTTC 1 cut(s) 269
Eco130I CCWWGG 1 cut(s) 481
Eco47I GGWCC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 174, 212
EcoO109I RGGNCCY 1 cut(s) 16
EcoRII CCWGG 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 481
ErhI CCWWGG 1 cut(s) 481
FaeI CATG 3 cut(s) 270, 409, 485
FaiI YATR 4 cut(s) 58, 268, 407, 483
FatI CATG 3 cut(s) 266, 405, 481
FbaI TGATCA 1 cut(s) 184
FblI GTMKAC 2 cut(s) 129, 213
Fnu4HI GCNGC 1 cut(s) 420
Fsp4HI GCNGC 1 cut(s) 420
GluI GCNGC 1 cut(s) 420
HapII CCGG 1 cut(s) 27
Hin1II CATG 3 cut(s) 270, 409, 485
HincII GTYRAC 4 cut(s) 94, 205, 214, 294
HindII GTYRAC 4 cut(s) 94, 205, 214, 294
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 1 cut(s) 47
HpaII CCGG 1 cut(s) 27
HphI GGTGA 4 cut(s) 16, 41, 283, 422
Hpy166II GTNNAC 6 cut(s) 10, 94, 130, 205, 214, 294
Hpy188I TCNGA 2 cut(s) 46, 224
Hpy188III TCNNGA 2 cut(s) 230, 320
Hpy8I GTNNAC 6 cut(s) 10, 94, 130, 205, 214, 294
HpyAV CCTTC 3 cut(s) 149, 156, 484
HpyCH4V TGCA 3 cut(s) 140, 161, 419
HpyF10VI GCNNNNNNNGC 2 cut(s) 158, 370
HpyF3I CTNAG 2 cut(s) 195, 374
Hsp92II CATG 3 cut(s) 270, 409, 485
Ksp22I TGATCA 1 cut(s) 184
Kzo9I GATC 2 cut(s) 66, 184
LmnI GCTCC 3 cut(s) 116, 232, 347
LpnPI CCDG 4 cut(s) 26, 40, 215, 305
Lsp1109I GCAGC 1 cut(s) 431
LweI GCATC 3 cut(s) 154, 325, 406
MaeIII GTNAC 2 cut(s) 262, 377
MalI GATC 2 cut(s) 68, 186
MboI GATC 2 cut(s) 66, 184
MboII GAAGA 3 cut(s) 286, 346, 382
MflI RGATCY 1 cut(s) 66
MluCI AATT 2 cut(s) 287, 386
MlyI GAGTC 1 cut(s) 41
MseI TTAA 1 cut(s) 330
MslI CAYNNNNRTG 1 cut(s) 269
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 1 cut(s) 14
MvaI CCWGG 1 cut(s) 14
MwoI GCNNNNNNNGC 2 cut(s) 158, 370
NcoI CCATGG 1 cut(s) 481
NdeII GATC 2 cut(s) 66, 184
NlaIII CATG 3 cut(s) 270, 409, 485
NlaIV GGNNCC 1 cut(s) 451
NmuCI GTSAC 2 cut(s) 262, 377
OliI CACNNNNGTG 1 cut(s) 269
PflFI GACNNNGTC 1 cut(s) 209
PinAI ACCGGT 1 cut(s) 26
PkrI GCNGC 1 cut(s) 421
PleI GAGTC 1 cut(s) 41
PpsI GAGTC 1 cut(s) 41
PpuMI RGGWCCY 1 cut(s) 16
Psp5II RGGWCCY 1 cut(s) 16
Psp6I CCWGG 1 cut(s) 12
PspGI CCWGG 1 cut(s) 12
PspN4I GGNNCC 1 cut(s) 451
PspPI GGNCC 1 cut(s) 16
PspPPI RGGWCCY 1 cut(s) 16
PstNI CAGNNNCTG 1 cut(s) 167
PsuI RGATCY 1 cut(s) 66
PsyI GACNNNGTC 1 cut(s) 209
RsaI GTAC 1 cut(s) 281
RsaNI GTAC 1 cut(s) 280
RseI CAYNNNNRTG 1 cut(s) 269
SalI GTCGAC 1 cut(s) 212
SaqAI TTAA 1 cut(s) 330
SatI GCNGC 1 cut(s) 420
Sau3AI GATC 2 cut(s) 66, 184
Sau96I GGNCC 1 cut(s) 16
SchI GAGTC 1 cut(s) 41
ScrFI CCNGG 1 cut(s) 14
SfaNI GCATC 3 cut(s) 154, 325, 406
SgrAI CRCCGGYG 1 cut(s) 26
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 1 cut(s) 269
SmlI CTYRAG 1 cut(s) 305
SmoI CTYRAG 1 cut(s) 305
Sse9I AATT 2 cut(s) 287, 386
StyD4I CCNGG 1 cut(s) 12
StyI CCWWGG 1 cut(s) 481
TaqI TCGA 1 cut(s) 213
TasI AATT 2 cut(s) 287, 386
Tru1I TTAA 1 cut(s) 330
Tru9I TTAA 1 cut(s) 330
TscAI CASTG 2 cut(s) 382, 460
TseFI GTSAC 2 cut(s) 262, 377
TseI GCWGC 1 cut(s) 419
Tsp45I GTSAC 2 cut(s) 262, 377
TspGWI ACGGA 1 cut(s) 111
TspRI CASTG 2 cut(s) 382, 460
Tth111I GACNNNGTC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 16
XmiI GTMKAC 2 cut(s) 129, 213
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.