Rmu_co8315439.1_g000001

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8315439.1
OG0000354
Physical Location & Seq
Reverse (-)
219 .. 503
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8315439.1_g000001.1.cds

Sequence Viewer

Length: 285 bp
atgggaagcataactttcaggattgttttcgggacaagttttgaaggcagcgattttgatcaccataggtttcatcaagtgcttcatgaaactgaaatcatgcttgcagaattgtcttcatctgattacttgccttcttatattgggtgtataatagacagaatctcgggtcggattagaaatttcgaaagagtttccagggaagttgatcgcttttttcagcaggtgattgatgatcatctcaagcctgggtggacgtcacaacaagagcatgacgacatatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

94

Amino Acids

11.04

Weight (kDa)

5.16

Isoelectric Point (pI)

24.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
AatII GACGTC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 214
AcsI RAATTY 1 cut(s) 181
AcyI GRCGYC 1 cut(s) 257
AgsI TTSAA 1 cut(s) 44
AjnI CCWGG 2 cut(s) 197, 247
Ama87I CYCGRG 1 cut(s) 166
ApeKI GCWGC 1 cut(s) 48
ApoI RAATTY 1 cut(s) 181
AsuHPI GGTGA 2 cut(s) 53, 238
AsuII TTCGAA 1 cut(s) 186
AvaI CYCGRG 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 60
BciT130I CCWGG 2 cut(s) 199, 249
BclI TGATCA 2 cut(s) 58, 235
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 1 cut(s) 49
BlsI GCNGC 1 cut(s) 50
Bme1390I CCNGG 2 cut(s) 199, 249
BmeT110I CYCGRG 1 cut(s) 166
BmrFI CCNGG 2 cut(s) 199, 249
BpiI GAAGAC 1 cut(s) 108
Bpu14I TTCGAA 1 cut(s) 186
BpuEI CTTGAG 1 cut(s) 227
BsaBI GATNNNNATC 2 cut(s) 57, 237
BsaHI GRCGYC 1 cut(s) 257
BsaJI CCNNGG 2 cut(s) 198, 248
Bse8I GATNNNNATC 2 cut(s) 57, 237
BseBI CCWGG 2 cut(s) 199, 249
BseDI CCNNGG 2 cut(s) 198, 248
BseJI GATNNNNATC 2 cut(s) 57, 237
BseXI GCAGC 1 cut(s) 60
BsiHKCI CYCGRG 1 cut(s) 166
BslFI GGGAC 1 cut(s) 46
BsmFI GGGAC 1 cut(s) 46
BsoBI CYCGRG 1 cut(s) 166
Bsp119I TTCGAA 1 cut(s) 186
Bsp143I GATC 3 cut(s) 58, 208, 235
BspHI TCATGA 1 cut(s) 85
BspMI ACCTGC 1 cut(s) 214
BspT104I TTCGAA 1 cut(s) 186
BssECI CCNNGG 2 cut(s) 198, 248
BssMI GATC 3 cut(s) 58, 208, 235
BssNI GRCGYC 1 cut(s) 257
Bst2UI CCWGG 2 cut(s) 199, 249
BstACI GRCGYC 1 cut(s) 257
BstBI TTCGAA 1 cut(s) 186
BstC8I GCNNGC 1 cut(s) 105
BstKTI GATC 3 cut(s) 61, 211, 238
BstMBI GATC 3 cut(s) 58, 208, 235
BstNI CCWGG 2 cut(s) 199, 249
BstSCI CCNGG 2 cut(s) 197, 247
BstV1I GCAGC 1 cut(s) 60
BstV2I GAAGAC 1 cut(s) 108
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 105
CciI TCATGA 1 cut(s) 85
CviAII CATG 3 cut(s) 86, 100, 272
CviJI RGCY 1 cut(s) 247
CviKI_1 RGCY 1 cut(s) 247
DpnI GATC 3 cut(s) 60, 210, 237
DpnII GATC 3 cut(s) 58, 208, 235
Eco88I CYCGRG 1 cut(s) 166
EcoRII CCWGG 2 cut(s) 197, 247
FaeI CATG 3 cut(s) 89, 103, 275
FaiI YATR 9 cut(s) 11, 66, 87, 101, 141, 152, 273, 281, 283
FalI AAGNNNNNCTT 1 cut(s) 30
FaqI GGGAC 1 cut(s) 46
FatI CATG 3 cut(s) 85, 99, 271
FbaI TGATCA 2 cut(s) 58, 235
Fnu4HI GCNGC 1 cut(s) 49
Fsp4HI GCNGC 1 cut(s) 49
GluI GCNGC 1 cut(s) 49
Hin1I GRCGYC 1 cut(s) 257
Hin1II CATG 3 cut(s) 89, 103, 275
HinfI GANTC 1 cut(s) 162
HphI GGTGA 2 cut(s) 53, 238
Hpy166II GTNNAC 1 cut(s) 255
Hpy188I TCNGA 2 cut(s) 124, 174
Hpy188III TCNNGA 3 cut(s) 19, 31, 86
Hpy8I GTNNAC 1 cut(s) 255
HpyAV CCTTC 2 cut(s) 38, 144
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 1 cut(s) 107
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 257
Hsp92II CATG 3 cut(s) 89, 103, 275
Ksp22I TGATCA 2 cut(s) 58, 235
Kzo9I GATC 3 cut(s) 58, 208, 235
LpnPI CCDG 6 cut(s) 4, 184, 209, 211, 234, 261
Lsp1109I GCAGC 1 cut(s) 60
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 258
MalI GATC 3 cut(s) 60, 210, 237
MboI GATC 3 cut(s) 58, 208, 235
MboII GAAGA 1 cut(s) 108
MluCI AATT 2 cut(s) 110, 181
MmeI TCCRAC 1 cut(s) 152
MspR9I CCNGG 2 cut(s) 199, 249
MvaI CCWGG 2 cut(s) 199, 249
NdeII GATC 3 cut(s) 58, 208, 235
NlaIII CATG 3 cut(s) 89, 103, 275
NmuCI GTSAC 1 cut(s) 258
NspV TTCGAA 1 cut(s) 186
PagI TCATGA 1 cut(s) 85
PaqCI CACCTGC 1 cut(s) 214
PfeI GAWTC 1 cut(s) 162
PkrI GCNGC 1 cut(s) 50
Psp6I CCWGG 2 cut(s) 197, 247
PspGI CCWGG 2 cut(s) 197, 247
SatI GCNGC 1 cut(s) 49
Sau3AI GATC 3 cut(s) 58, 208, 235
ScrFI CCNGG 2 cut(s) 199, 249
SetI ASST 3 cut(s) 71, 228, 260
SfuI TTCGAA 1 cut(s) 186
SmlI CTYRAG 1 cut(s) 242
SmoI CTYRAG 1 cut(s) 242
Sse9I AATT 2 cut(s) 110, 181
StyD4I CCNGG 2 cut(s) 197, 247
TaiI ACGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 186
TasI AATT 2 cut(s) 110, 181
TfiI GAWTC 1 cut(s) 162
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 48
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 4 cut(s) 62, 74, 102, 108
XapI RAATTY 1 cut(s) 181
ZraI GACGTC 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.