Rroxscaffold_1G00054350

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000354
Physical Location & Seq
Forward (+)
75763423 .. 75765499
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00054350.1

Sequence Viewer

Length: 942 bp
ATGGCGTATCTAGCAAAAGTTGGGTCCAATCATGCTCTTACAAGTCGGTTGCATACCGACTCTCATAATCTCCTCAACCGAAGCAGCTCAACGGTCTTGAAAGATAATGACATCCTCTGCTATAATAGACCCGCCTCCACGGGGTCTCAAAAAATCACTTACAATTATCTAGACATGGAATTTGAGCCATACAATAAGTATTGGCGAGAGATAAGAAAGATATGTGTGCTTGAGCTTTTCGGTGTGCAAAGAGTGCACTCATATCTGTCCATTAGGGAAGACGAAGTGGCTAAGATGATTGATTCAATCTCTAATGACTCCGCTTCTTCTTCTTCTTCTATTCATCTTATCGACAAGTTGTTTGCTCTCATGGGAAGCATAATATTCAGGATTGTTTTCAAGATCAATTTTGAGAAGAGTGATTTCGAGCATGATAGAATTCATCAATCGCTTCAAGATACAAAGAATCATGATTGCGGGCTTCTCTCTGCAGCTGATTATTTTCCTTCTCATATTGGGTCGACTATAAACTGGATTTGTGGTAGACGTAAAGAGTTTGATAGGGTCTCTGGAGAACTTGATCCTTTTTTTAGCAGGACCCACGGTTCCGGAACTACTCGACTTGGTCATAATAACATCAAGGCTGTCATCATGATTTCCATAAGTGGAATAGATACTGGTGCAATCACCATGGAGTGGACGATGGTTGAGCTTGCTAGGAAGCCGAGACTTATGAAGAAAGCACAAGAAGAAGTTAGAAACCTCATAAGAAATAAAGGGAAAGTCTTTGAAAGTGATATCGAACAACTTCAATATCTCAAGATGATTGTGAATGTAGATACCTCTACTAGCAAGGCTATTTTTTACATCACCAAGCATAAGGATCTATATGGGGACGACGATGGTGGAGCTCGGCCTTGCAAGCCTGCTCTACTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

313

Amino Acids

35.65

Weight (kDa)

8.47

Isoelectric Point (pI)

34.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 32 - 185 3e-06 Cytochrome P450
p450 PF00067 205 - 278 9.2e-12 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 696
AccI GTMKAC 2 cut(s) 521, 544
AccIII TCCGGA 1 cut(s) 608
AciI CCGC 3 cut(s) 132, 321, 477
AclWI GGATC 2 cut(s) 575, 891
AcsI RAATTY 2 cut(s) 179, 438
AfiI CCNNNNNNNGG 2 cut(s) 141, 696
AgsI TTSAA 6 cut(s) 100, 306, 400, 455, 791, 812
AloI GAACNNNNNNTCC 2 cut(s) 589, 621
AluBI AGCT 5 cut(s) 87, 235, 494, 712, 911
AluI AGCT 5 cut(s) 87, 235, 494, 712, 911
Alw21I GWGCWC 2 cut(s) 258, 913
Alw26I GTCTC 3 cut(s) 150, 571, 721
Alw44I GTGCAC 1 cut(s) 254
AlwI GGATC 2 cut(s) 575, 891
Aor13HI TCCGGA 1 cut(s) 608
AoxI GGCC 1 cut(s) 914
ApaLI GTGCAC 1 cut(s) 254
ApeKI GCWGC 2 cut(s) 84, 491
ApoI RAATTY 2 cut(s) 179, 438
ArsI GACNNNNNNTTYG 6 cut(s) 8, 40, 164, 196, 344, 376
Asp700I GAANNNNTTC 1 cut(s) 807
AspS9I GGNCC 2 cut(s) 24, 597
AsuHPI GGTGA 2 cut(s) 679, 862
AvaII GGWCC 2 cut(s) 24, 597
BaeGI GKGCMC 1 cut(s) 258
BanII GRGCYC 1 cut(s) 913
BbsI GAAGAC 1 cut(s) 285
Bbv12I GWGCWC 2 cut(s) 258, 913
BbvI GCAGC 2 cut(s) 96, 503
BccI CCATC 2 cut(s) 697, 896
BcoDI GTCTC 3 cut(s) 150, 571, 721
BfaI CTAG 4 cut(s) 11, 170, 717, 849
BfmI CTRYAG 1 cut(s) 489
BisI GCNGC 2 cut(s) 85, 492
BlsI GCNGC 2 cut(s) 86, 493
Bme18I GGWCC 2 cut(s) 24, 597
BmgT120I GGNCC 2 cut(s) 24, 597
BmiI GGNNCC 3 cut(s) 25, 599, 607
BpiI GAAGAC 1 cut(s) 285
BpmI CTGGAG 1 cut(s) 591
BpuEI CTTGAG 2 cut(s) 251, 803
BsaI GGTCTC 2 cut(s) 150, 571
BsaJI CCNNGG 3 cut(s) 138, 601, 690
BsaWI WCCGGW 1 cut(s) 608
Bsc4I CCNNNNNNNGG 2 cut(s) 141, 696
Bse1I ACTGG 2 cut(s) 536, 682
BseAI TCCGGA 1 cut(s) 608
BseDI CCNNGG 3 cut(s) 138, 601, 690
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 141, 696
BseNI ACTGG 2 cut(s) 536, 682
BseRI GAGGAG 1 cut(s) 62
BseSI GKGCMC 1 cut(s) 258
BseXI GCAGC 2 cut(s) 96, 503
BshFI GGCC 1 cut(s) 916
BsiHKAI GWGCWC 2 cut(s) 258, 913
BsiSI CCGG 1 cut(s) 609
BslFI GGGAC 1 cut(s) 908
BslI CCNNNNNNNGG 2 cut(s) 141, 696
BsmAI GTCTC 3 cut(s) 150, 571, 721
BsmFI GGGAC 1 cut(s) 908
BsnI GGCC 1 cut(s) 916
Bso31I GGTCTC 2 cut(s) 150, 571
Bsp1286I GDGCHC 2 cut(s) 258, 913
Bsp13I TCCGGA 1 cut(s) 608
Bsp143I GATC 3 cut(s) 402, 580, 883
Bsp19I CCATGG 1 cut(s) 690
BspACI CCGC 3 cut(s) 132, 321, 477
BspANI GGCC 1 cut(s) 916
BspEI TCCGGA 1 cut(s) 608
BspHI TCATGA 2 cut(s) 469, 651
BspLI GGNNCC 3 cut(s) 25, 599, 607
BspMAI CTGCAG 1 cut(s) 493
BspPI GGATC 2 cut(s) 575, 891
BspTNI GGTCTC 2 cut(s) 150, 571
BsrI ACTGG 2 cut(s) 536, 682
BssECI CCNNGG 3 cut(s) 138, 601, 690
BssMI GATC 3 cut(s) 402, 580, 883
BssT1I CCWWGG 1 cut(s) 690
Bst4CI ACNGT 2 cut(s) 94, 605
Bst6I CTCTTC 1 cut(s) 410
BstAPI GCANNNNNTGC 1 cut(s) 253
BstC8I GCNNGC 4 cut(s) 479, 714, 923, 927
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 3 cut(s) 138, 601, 690
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 3 cut(s) 405, 583, 886
BstMAI GTCTC 3 cut(s) 150, 571, 721
BstMBI GATC 3 cut(s) 402, 580, 883
BstMWI GCNNNNNNNGC 3 cut(s) 11, 253, 922
BstSFI CTRYAG 1 cut(s) 489
BstSLI GKGCMC 1 cut(s) 258
BstV1I GCAGC 2 cut(s) 96, 503
BstV2I GAAGAC 1 cut(s) 285
BstX2I RGATCY 1 cut(s) 883
BstYI RGATCY 1 cut(s) 883
BsuRI GGCC 1 cut(s) 916
BtgI CCRYGG 3 cut(s) 138, 601, 690
BtsCI GGATG 1 cut(s) 111
Cac8I GCNNGC 4 cut(s) 479, 714, 923, 927
CciI TCATGA 2 cut(s) 469, 651
Cfr13I GGNCC 2 cut(s) 24, 597
CviAII CATG 7 cut(s) 32, 175, 370, 431, 470, 652, 691
DdeI CTNAG 1 cut(s) 291
DpnI GATC 3 cut(s) 404, 582, 885
DpnII GATC 3 cut(s) 402, 580, 883
Eam1104I CTCTTC 1 cut(s) 410
EarI CTCTTC 1 cut(s) 410
Ecl136II GAGCTC 1 cut(s) 911
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 913
Eco31I GGTCTC 2 cut(s) 150, 571
Eco32I GATATC 1 cut(s) 799
Eco47I GGWCC 2 cut(s) 24, 597
Eco53kI GAGCTC 1 cut(s) 911
EcoICRI GAGCTC 1 cut(s) 911
EcoO109I RGGNCCY 1 cut(s) 597
EcoRI GAATTC 1 cut(s) 438
EcoRV GATATC 1 cut(s) 799
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 7 cut(s) 35, 178, 373, 434, 473, 655, 694
FaqI GGGAC 1 cut(s) 908
FatI CATG 7 cut(s) 31, 174, 369, 430, 469, 651, 690
FauI CCCGC 2 cut(s) 139, 470
FblI GTMKAC 2 cut(s) 521, 544
Fnu4HI GCNGC 2 cut(s) 85, 492
FokI GGATG 1 cut(s) 98
FriOI GRGCYC 1 cut(s) 913
Fsp4HI GCNGC 2 cut(s) 85, 492
FspBI CTAG 4 cut(s) 11, 170, 717, 849
GluI GCNGC 2 cut(s) 85, 492
GsuI CTGGAG 1 cut(s) 591
HaeIII GGCC 1 cut(s) 916
HapII CCGG 1 cut(s) 609
Hin1II CATG 7 cut(s) 35, 178, 373, 434, 473, 655, 694
HincII GTYRAC 1 cut(s) 522
HindII GTYRAC 1 cut(s) 522
HinfI GANTC 4 cut(s) 59, 302, 317, 466
HpaII CCGG 1 cut(s) 609
HphI GGTGA 2 cut(s) 679, 862
Hpy166II GTNNAC 4 cut(s) 256, 522, 545, 699
Hpy8I GTNNAC 4 cut(s) 256, 522, 545, 699
Hpy99I CGWCG 1 cut(s) 902
HpyAV CCTTC 1 cut(s) 516
HpyCH4III ACNGT 2 cut(s) 94, 605
HpyCH4IV ACGT 1 cut(s) 547
HpyCH4V TGCA 6 cut(s) 52, 247, 256, 491, 683, 921
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 253, 922
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 1 cut(s) 547
Hsp92II CATG 7 cut(s) 35, 178, 373, 434, 473, 655, 694
Kpn2I TCCGGA 1 cut(s) 608
Kzo9I GATC 3 cut(s) 402, 580, 883
LmnI GCTCC 1 cut(s) 908
LpnPI CCDG 6 cut(s) 373, 517, 555, 580, 622, 663
Lsp1109I GCAGC 2 cut(s) 96, 503
MaeI CTAG 4 cut(s) 11, 170, 717, 849
MaeII ACGT 1 cut(s) 547
MalI GATC 3 cut(s) 404, 582, 885
MboI GATC 3 cut(s) 402, 580, 883
MboII GAAGA 8 cut(s) 290, 318, 321, 324, 327, 427, 748, 761
MflI RGATCY 1 cut(s) 883
MhlI GDGCHC 2 cut(s) 258, 913
MluCI AATT 4 cut(s) 163, 179, 406, 438
MlyI GAGTC 2 cut(s) 53, 311
MnlI CCTC 5 cut(s) 83, 125, 145, 773, 853
MroI TCCGGA 1 cut(s) 608
MroXI GAANNNNTTC 1 cut(s) 807
MseI TTAA 1 cut(s) 940
MspA1I CMGCKG 1 cut(s) 494
MspI CCGG 1 cut(s) 609
MwoI GCNNNNNNNGC 3 cut(s) 11, 253, 922
NcoI CCATGG 1 cut(s) 690
NdeII GATC 3 cut(s) 402, 580, 883
NlaIII CATG 7 cut(s) 35, 178, 373, 434, 473, 655, 694
NlaIV GGNNCC 3 cut(s) 25, 599, 607
NmeAIII GCCGAG 2 cut(s) 750, 892
PagI TCATGA 2 cut(s) 469, 651
PdmI GAANNNNTTC 1 cut(s) 807
PfeI GAWTC 2 cut(s) 302, 466
PflFI GACNNNGTC 1 cut(s) 624
PflMI CCANNNNNTGG 1 cut(s) 696
PkrI GCNGC 2 cut(s) 86, 493
PleI GAGTC 2 cut(s) 53, 311
PpsI GAGTC 2 cut(s) 53, 311
PpuMI RGGWCCY 1 cut(s) 597
Psp124BI GAGCTC 1 cut(s) 913
Psp5II RGGWCCY 1 cut(s) 597
PspN4I GGNNCC 3 cut(s) 25, 599, 607
PspPI GGNCC 2 cut(s) 24, 597
PspPPI RGGWCCY 1 cut(s) 597
PstI CTGCAG 1 cut(s) 493
PsuI RGATCY 1 cut(s) 883
PsyI GACNNNGTC 1 cut(s) 624
PvuII CAGCTG 1 cut(s) 494
SacI GAGCTC 1 cut(s) 913
SalI GTCGAC 1 cut(s) 520
SaqAI TTAA 1 cut(s) 940
SatI GCNGC 2 cut(s) 85, 492
Sau3AI GATC 3 cut(s) 402, 580, 883
Sau96I GGNCC 2 cut(s) 24, 597
SchI GAGTC 2 cut(s) 53, 311
SduI GDGCHC 2 cut(s) 258, 913
SetI ASST 8 cut(s) 89, 237, 496, 550, 714, 765, 845, 913
SfcI CTRYAG 1 cut(s) 489
SinI GGWCC 2 cut(s) 24, 597
SmlI CTYRAG 2 cut(s) 230, 818
SmoI CTYRAG 2 cut(s) 230, 818
Sse9I AATT 4 cut(s) 163, 179, 406, 438
SsiI CCGC 3 cut(s) 132, 321, 477
SspI AATATT 1 cut(s) 384
SspMI CTAG 4 cut(s) 11, 170, 717, 849
SstI GAGCTC 1 cut(s) 913
StyI CCWWGG 1 cut(s) 690
TaaI ACNGT 2 cut(s) 94, 605
TaiI ACGT 1 cut(s) 550
TaqI TCGA 5 cut(s) 351, 426, 521, 619, 801
TasI AATT 4 cut(s) 163, 179, 406, 438
TfiI GAWTC 2 cut(s) 302, 466
Tru1I TTAA 1 cut(s) 940
Tru9I TTAA 1 cut(s) 940
TseI GCWGC 2 cut(s) 84, 491
TspDTI ATGAA 3 cut(s) 332, 431, 749
Tth111I GACNNNGTC 1 cut(s) 624
Van91I CCANNNNNTGG 1 cut(s) 696
VneI GTGCAC 1 cut(s) 254
VpaK11BI GGWCC 2 cut(s) 24, 597
XapI RAATTY 2 cut(s) 179, 438
XbaI TCTAGA 1 cut(s) 169
XmiI GTMKAC 2 cut(s) 521, 544
XmnI GAANNNNTTC 1 cut(s) 807
XspI CTAG 4 cut(s) 11, 170, 717, 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.