Rh4CG233000

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000354
Physical Location & Seq
Reverse (-)
47262868 .. 47264957
2090 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG233000.1

Sequence Viewer

Length: 375 bp
ATGGGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGCACGATTTGGAGCATGAAAGATTTCTTCGAGTGCTTCATGATAGTCAAAATATGATTTTAGGTTTCTCAGCAGCTGATTTCTTTCCTCCAGGTATCGGGTGGATCATAGACAGGATCTCCGGTAAACATAGAGAGTTTGATAGAGTTTCCAGGGAAGTTCATGGCTTTTTTCAGCAGGCGATTGATGATCATCTCAGGCCTGGGAGGACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGATCAAGGAACAAACTGGGATTGGAGCTGCTCAGCTTGGTCATAATAACATCAAGGCAGTTCTCTTGGAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

124

Amino Acids

14.17

Weight (kDa)

5.86

Isoelectric Point (pI)

30.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 158, 170
AfiI CCNNNNNNNGG 1 cut(s) 143
AjnI CCWGG 3 cut(s) 136, 197, 247
AluBI AGCT 3 cut(s) 122, 326, 334
AluI AGCT 3 cut(s) 122, 326, 334
AlwI GGATC 2 cut(s) 158, 170
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 1 cut(s) 245
ApeKI GCWGC 3 cut(s) 119, 289, 326
Asp700I GAANNNNTTC 1 cut(s) 69
BaeGI GKGCMC 1 cut(s) 51
BbvI GCAGC 3 cut(s) 131, 276, 313
BciT130I CCWGG 3 cut(s) 138, 199, 249
BclI TGATCA 2 cut(s) 235, 300
BisI GCNGC 3 cut(s) 120, 290, 327
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 3 cut(s) 121, 291, 328
Bme1390I CCNGG 3 cut(s) 138, 199, 249
BmrFI CCNGG 3 cut(s) 138, 199, 249
BmrI ACTGGG 1 cut(s) 324
BmuI ACTGGG 1 cut(s) 324
BpmI CTGGAG 1 cut(s) 120
Bpu1102I GCTNAGC 1 cut(s) 330
BsaBI GATNNNNATC 1 cut(s) 237
BsaJI CCNNGG 3 cut(s) 43, 198, 248
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 149, 179
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse1I ACTGG 1 cut(s) 319
Bse8I GATNNNNATC 1 cut(s) 237
BseBI CCWGG 3 cut(s) 138, 199, 249
BseDI CCNNGG 3 cut(s) 43, 198, 248
BseJI GATNNNNATC 1 cut(s) 237
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMII CTCAG 3 cut(s) 129, 256, 344
BseNI ACTGG 1 cut(s) 319
BseSI GKGCMC 1 cut(s) 51
BseXI GCAGC 3 cut(s) 131, 276, 313
BshFI GGCC 1 cut(s) 247
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 1 cut(s) 46
BslI CCNNNNNNNGG 1 cut(s) 143
BsmFI GGGAC 1 cut(s) 46
BsnI GGCC 1 cut(s) 247
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 4 cut(s) 150, 162, 235, 300
Bsp1720I GCTNAGC 1 cut(s) 330
BspANI GGCC 1 cut(s) 247
BspCNI CTCAG 3 cut(s) 128, 255, 343
BspHI TCATGA 1 cut(s) 85
BspPI GGATC 2 cut(s) 158, 170
BsrI ACTGG 1 cut(s) 319
BssECI CCNNGG 3 cut(s) 43, 198, 248
BssMI GATC 4 cut(s) 150, 162, 235, 300
BssT1I CCWWGG 1 cut(s) 43
Bst2UI CCWGG 3 cut(s) 138, 199, 249
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 3 cut(s) 115, 242, 330
BstKTI GATC 4 cut(s) 153, 165, 238, 303
BstMBI GATC 4 cut(s) 150, 162, 235, 300
BstNI CCWGG 3 cut(s) 138, 199, 249
BstSCI CCNGG 3 cut(s) 136, 197, 247
BstSLI GKGCMC 1 cut(s) 51
BstV1I GCAGC 3 cut(s) 131, 276, 313
BstX2I RGATCY 1 cut(s) 162
BstYI RGATCY 1 cut(s) 162
BsuRI GGCC 1 cut(s) 247
Cac8I GCNNGC 1 cut(s) 225
CaiI CAGNNNCTG 1 cut(s) 122
CciI TCATGA 1 cut(s) 85
CviAII CATG 4 cut(s) 62, 86, 209, 269
CviJI RGCY 5 cut(s) 122, 213, 247, 326, 334
CviKI_1 RGCY 5 cut(s) 122, 213, 247, 326, 334
DdeI CTNAG 3 cut(s) 115, 242, 330
DpnI GATC 4 cut(s) 152, 164, 237, 302
DpnII GATC 4 cut(s) 150, 162, 235, 300
Eco130I CCWWGG 1 cut(s) 43
Eco147I AGGCCT 1 cut(s) 247
EcoRII CCWGG 3 cut(s) 136, 197, 247
EcoT14I CCWWGG 1 cut(s) 43
ErhI CCWWGG 1 cut(s) 43
FaeI CATG 4 cut(s) 65, 89, 212, 272
FaqI GGGAC 1 cut(s) 46
FatI CATG 4 cut(s) 61, 85, 208, 268
FbaI TGATCA 2 cut(s) 235, 300
Fnu4HI GCNGC 3 cut(s) 120, 290, 327
Fsp4HI GCNGC 3 cut(s) 120, 290, 327
GluI GCNGC 3 cut(s) 120, 290, 327
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 247
HapII CCGG 1 cut(s) 168
Hin1II CATG 4 cut(s) 65, 89, 212, 272
HpaII CCGG 1 cut(s) 168
Hpy166II GTNNAC 1 cut(s) 173
Hpy188III TCNNGA 3 cut(s) 19, 31, 86
Hpy8I GTNNAC 1 cut(s) 173
HpyF3I CTNAG 3 cut(s) 115, 242, 330
Hsp92II CATG 4 cut(s) 65, 89, 212, 272
Ksp22I TGATCA 2 cut(s) 235, 300
Kzo9I GATC 4 cut(s) 150, 162, 235, 300
LmnI GCTCC 3 cut(s) 58, 265, 323
Lsp1109I GCAGC 3 cut(s) 131, 276, 313
MalI GATC 4 cut(s) 152, 164, 237, 302
MboI GATC 4 cut(s) 150, 162, 235, 300
MboII GAAGA 2 cut(s) 65, 284
MflI RGATCY 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 1 cut(s) 12
MnlI CCTC 3 cut(s) 144, 246, 361
MroXI GAANNNNTTC 1 cut(s) 69
MseI TTAA 1 cut(s) 294
MspA1I CMGCKG 1 cut(s) 122
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 3 cut(s) 138, 199, 249
MvaI CCWGG 3 cut(s) 138, 199, 249
NdeII GATC 4 cut(s) 150, 162, 235, 300
NlaIII CATG 4 cut(s) 65, 89, 212, 272
PagI TCATGA 1 cut(s) 85
PceI AGGCCT 1 cut(s) 247
PdmI GAANNNNTTC 1 cut(s) 69
PkrI GCNGC 3 cut(s) 121, 291, 328
Psp6I CCWGG 3 cut(s) 136, 197, 247
PspGI CCWGG 3 cut(s) 136, 197, 247
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 1 cut(s) 162
PvuII CAGCTG 1 cut(s) 122
SaqAI TTAA 1 cut(s) 294
SatI GCNGC 3 cut(s) 120, 290, 327
Sau3AI GATC 4 cut(s) 150, 162, 235, 300
ScrFI CCNGG 3 cut(s) 138, 199, 249
SduI GDGCHC 1 cut(s) 51
SetI ASST 5 cut(s) 112, 124, 142, 328, 336
Sse9I AATT 1 cut(s) 12
SseBI AGGCCT 1 cut(s) 247
StuI AGGCCT 1 cut(s) 247
StyD4I CCNGG 3 cut(s) 136, 197, 247
StyI CCWWGG 1 cut(s) 43
TaqI TCGA 1 cut(s) 76
TasI AATT 1 cut(s) 12
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
TseI GCWGC 3 cut(s) 119, 289, 326
TspDTI ATGAA 4 cut(s) 74, 78, 197, 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 144
XmnI GAANNNNTTC 1 cut(s) 69
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.