AT3G53290

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
19758157 .. 19759603
1447 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53290.1

Sequence Viewer

Length: 1224 bp
ATGTTCTTTTATCTTTATTTATCATCATCAGCTAAAGAAGTTCTCAAGACTCATGACCTAGAGACATGCACTCGACCTAAGATGGTCACGACCGGTTTGTTTTCTTACAACTTCAAAGACATTGGTTTCACTCAATATGGAGAGGAATGGGGAGAGATGAAAAAGCTTATAGGGCTTGAGCTCTTTAGTCCAAAAACGCAAAAGTCTTTTAGGTATATCAGAGAGGAAGAGAGTGACTTGCTGGTCAAGAAAATTTCAAAATCTGCTCAAACACAAACCCTAGTGGATTTGGGAAAACCCCTTTTCTCCTTCACTGCCGGTATTATATTTAGACTTGCGTTTGGACAGAACTTCCGTAAGTGCGATTTTATCGATAGGGAGAGAGTCGAAGAGCTGGTGGTAGAGTCAGAGACCAACGTAGGCACCTTGGCATTTTCTGACTTCTTCCCCACGGGTCTCGGATGGCTTATAGACCGGCTCTCTGGTCAAAGTTCGAGGATGAACAAAGTCTTTTCCAAACTCACCAATTTATTTGAACATGTGATTGATGATCATTTAAAGACTGAACAACATCAAGATCACTCAAACCTCATCAGTGCCATGTTGAATATGATCAATAAACCCACCAATATAGGCTCTTTCAAGATCACTTCCGATCATCTCAAAGGAGTCATGTCGGTTAGTGTGTATGATTTCTTAACTGGTACTCTGATTCGAGCAACACTCGGTTCCAACAAAGAGAGAATCACAGAAGAAGATCTAGAGAAAGTTGAGTACCTAAAGATGGTGATCGAGGAAACATTCAGACTACACCCACCTGCTCCACTCTTGCTCCCAAGATTAACAATGTCCGACGTCACAATTCAAGGCTACAACATTCCCAAAAACACCATGATTGAGATCAACACTTATACCATAGGTCGTGATCCAAAATGTTGGACTAACCCTGAAGAATTCATTCCTGAGAGGTTTTCCAACACCTCTATAAACTACAAGGGTCAGCATTTCGAGCTCTTGCCCTTTGGAGCTGGTCGTAGGAGCTGTCCCGGAATGTCCTTGGGAATCACCATTCTTGAGCTAGGCCTTCTTAACCTTCTTTATTTCTTTGATTGGCGTTTGCCCAATGGAATGACCATTGCTGACATTGACATGGAAGAAGTTGGAGCTTTAAACATAGCTAAGAAAGTACCTCTTGAGCTCGTACCAACTCTTCATCATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

407

Amino Acids

46.5

Weight (kDa)

5.99

Isoelectric Point (pI)

35.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 222 4.2e-16 Cytochrome P450
p450 PF00067 240 - 395 6.3e-49 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 826
AasI GACNNNNNNGTC 1 cut(s) 242
AatII GACGTC 1 cut(s) 858
Acc36I ACCTGC 1 cut(s) 826
AccB1I GGYRCC 1 cut(s) 422
AclWI GGATC 1 cut(s) 920
AcsI RAATTY 2 cut(s) 252, 953
AcuI CTGAAG 1 cut(s) 969
AcyI GRCGYC 1 cut(s) 855
AfaI GTAC 4 cut(s) 706, 776, 1188, 1203
AfiI CCNNNNNNNGG 1 cut(s) 784
AflIII ACRYGT 1 cut(s) 538
AgeI ACCGGT 1 cut(s) 92
AgsI TTSAA 6 cut(s) 115, 258, 536, 607, 643, 866
Alw21I GWGCWC 3 cut(s) 183, 1014, 1200
Alw26I GTCTC 3 cut(s) 56, 404, 461
AlwI GGATC 1 cut(s) 920
AoxI GGCC 1 cut(s) 1081
ApoI RAATTY 2 cut(s) 252, 953
AsiGI ACCGGT 1 cut(s) 92
Asp700I GAANNNNTTC 1 cut(s) 957
AsuC2I CCSGG 1 cut(s) 1047
AsuHPI GGTGA 3 cut(s) 514, 799, 1057
BanI GGYRCC 1 cut(s) 422
BanII GRGCYC 3 cut(s) 183, 1014, 1200
BarI GAAGNNNNNNTAC 1 cut(s) 1194
Bbv12I GWGCWC 3 cut(s) 183, 1014, 1200
BccI CCATC 3 cut(s) 76, 456, 778
BclI TGATCA 2 cut(s) 550, 612
BcnI CCSGG 1 cut(s) 1047
BcoDI GTCTC 3 cut(s) 56, 404, 461
BfaI CTAG 4 cut(s) 59, 281, 761, 1079
BfuAI ACCTGC 1 cut(s) 826
BglII AGATCT 1 cut(s) 757
Bme1390I CCNGG 1 cut(s) 1047
BmiI GGNNCC 2 cut(s) 424, 730
BmrFI CCNGG 1 cut(s) 1047
BplI GAGNNNNNCTC 2 cut(s) 708, 740
BpuEI CTTGAG 4 cut(s) 29, 197, 1094, 1214
BpuMI CCSGG 1 cut(s) 1047
Bsa29I ATCGAT 1 cut(s) 372
BsaBI GATNNNNATC 2 cut(s) 788, 899
BsaHI GRCGYC 1 cut(s) 855
BsaI GGTCTC 2 cut(s) 404, 461
BsaJI CCNNGG 3 cut(s) 426, 450, 1056
BsaWI WCCGGW 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 816, 846
Bsc4I CCNNNNNNNGG 1 cut(s) 784
Bse118I RCCGGY 3 cut(s) 92, 317, 474
Bse1I ACTGG 1 cut(s) 706
Bse3DI GCAATG 1 cut(s) 1134
Bse8I GATNNNNATC 2 cut(s) 788, 899
BseCI ATCGAT 1 cut(s) 372
BseDI CCNNGG 3 cut(s) 426, 450, 1056
BseGI GGATG 2 cut(s) 467, 504
BseJI GATNNNNATC 2 cut(s) 788, 899
BseLI CCNNNNNNNGG 1 cut(s) 784
BseMI GCAATG 1 cut(s) 1134
BseMII CTCAG 1 cut(s) 954
BseNI ACTGG 1 cut(s) 706
Bsh1285I CGRYCG 1 cut(s) 93
BshFI GGCC 1 cut(s) 1083
BshNI GGYRCC 1 cut(s) 422
BshTI ACCGGT 1 cut(s) 92
BshVI ATCGAT 1 cut(s) 372
BsiEI CGRYCG 1 cut(s) 93
BsiHKAI GWGCWC 3 cut(s) 183, 1014, 1200
BsiSI CCGG 4 cut(s) 93, 318, 475, 1047
BslFI GGGAC 1 cut(s) 1029
BslI CCNNNNNNNGG 1 cut(s) 784
BsmAI GTCTC 3 cut(s) 56, 404, 461
BsmFI GGGAC 1 cut(s) 1029
BsnI GGCC 1 cut(s) 1083
Bso31I GGTCTC 2 cut(s) 404, 461
Bsp1286I GDGCHC 3 cut(s) 183, 1014, 1200
Bsp143I GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
BspANI GGCC 1 cut(s) 1083
BspCNI CTCAG 1 cut(s) 955
BspDI ATCGAT 1 cut(s) 372
BspHI TCATGA 1 cut(s) 52
BspLI GGNNCC 2 cut(s) 424, 730
BspMI ACCTGC 1 cut(s) 826
BspPI GGATC 1 cut(s) 920
BspQI GCTCTTC 1 cut(s) 384
BspT107I GGYRCC 1 cut(s) 422
BspTNI GGTCTC 2 cut(s) 404, 461
BsrDI GCAATG 1 cut(s) 1134
BsrFI RCCGGY 3 cut(s) 92, 317, 474
BsrI ACTGG 1 cut(s) 706
BssAI RCCGGY 3 cut(s) 92, 317, 474
BssECI CCNNGG 3 cut(s) 426, 450, 1056
BssMI GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
BssNI GRCGYC 1 cut(s) 855
BssT1I CCWWGG 2 cut(s) 426, 1056
Bst6I CTCTTC 3 cut(s) 222, 384, 1215
BstACI GRCGYC 1 cut(s) 855
BstDEI CTNAG 3 cut(s) 78, 963, 1179
BstDSI CCRYGG 1 cut(s) 450
BstF5I GGATG 2 cut(s) 467, 504
BstKTI GATC 9 cut(s) 553, 580, 615, 648, 658, 760, 792, 903, 928
BstMAI GTCTC 3 cut(s) 56, 404, 461
BstMBI GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
BstMCI CGRYCG 1 cut(s) 93
BstMWI GCNNNNNNNGC 2 cut(s) 172, 1009
BstNSI RCATGY 2 cut(s) 69, 542
BstSCI CCNGG 1 cut(s) 1045
BstX2I RGATCY 1 cut(s) 757
BstXI CCANNNNNNTGG 1 cut(s) 936
BstYI RGATCY 1 cut(s) 757
Bsu15I ATCGAT 1 cut(s) 372
BsuRI GGCC 1 cut(s) 1083
BsuTUI ATCGAT 1 cut(s) 372
BtgI CCRYGG 1 cut(s) 450
BtsCI GGATG 2 cut(s) 467, 504
BtsI GCAGTG 1 cut(s) 312
BtsIMutI CAGTG 2 cut(s) 312, 601
BveI ACCTGC 1 cut(s) 826
CciI TCATGA 1 cut(s) 52
Cfr10I RCCGGY 3 cut(s) 92, 317, 474
ClaI ATCGAT 1 cut(s) 372
Csp6I GTAC 4 cut(s) 705, 775, 1187, 1202
CspAI ACCGGT 1 cut(s) 92
CviAII CATG 7 cut(s) 53, 66, 539, 601, 673, 892, 1150
CviQI GTAC 4 cut(s) 705, 775, 1187, 1202
DdeI CTNAG 3 cut(s) 78, 963, 1179
DpnI GATC 9 cut(s) 552, 579, 614, 647, 657, 759, 791, 902, 927
DpnII GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
DraI TTTAAA 2 cut(s) 558, 1170
DrdI GACNNNNNNGTC 1 cut(s) 242
DseDI GACNNNNNNGTC 1 cut(s) 242
Eam1104I CTCTTC 3 cut(s) 222, 384, 1215
EarI CTCTTC 3 cut(s) 222, 384, 1215
Ecl136II GAGCTC 3 cut(s) 181, 1012, 1198
Eco130I CCWWGG 2 cut(s) 426, 1056
Eco147I AGGCCT 1 cut(s) 1083
Eco24I GRGCYC 3 cut(s) 183, 1014, 1200
Eco31I GGTCTC 2 cut(s) 404, 461
Eco53kI GAGCTC 3 cut(s) 181, 1012, 1198
Eco57I CTGAAG 1 cut(s) 969
EcoICRI GAGCTC 3 cut(s) 181, 1012, 1198
EcoRI GAATTC 1 cut(s) 953
EcoT14I CCWWGG 2 cut(s) 426, 1056
EcoT38I GRGCYC 3 cut(s) 183, 1014, 1200
ErhI CCWWGG 2 cut(s) 426, 1056
FaeI CATG 7 cut(s) 56, 69, 542, 604, 676, 895, 1153
FalI AAGNNNNNCTT 2 cut(s) 1176, 1208
FaqI GGGAC 1 cut(s) 1029
FatI CATG 7 cut(s) 52, 65, 538, 600, 672, 891, 1149
FbaI TGATCA 2 cut(s) 550, 612
FokI GGATG 2 cut(s) 474, 511
FriOI GRGCYC 3 cut(s) 183, 1014, 1200
FspBI CTAG 4 cut(s) 59, 281, 761, 1079
HaeIII GGCC 1 cut(s) 1083
HapII CCGG 4 cut(s) 93, 318, 475, 1047
Hin1I GRCGYC 1 cut(s) 855
Hin1II CATG 7 cut(s) 56, 69, 542, 604, 676, 895, 1153
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 7 cut(s) 49, 384, 404, 669, 712, 744, 1062
HpaII CCGG 4 cut(s) 93, 318, 475, 1047
HphI GGTGA 3 cut(s) 514, 799, 1057
Hpy188I TCNGA 8 cut(s) 221, 409, 439, 461, 655, 711, 806, 853
Hpy99I CGWCG 1 cut(s) 857
HpyAV CCTTC 3 cut(s) 319, 1094, 1103
HpyCH4IV ACGT 2 cut(s) 417, 855
HpyCH4V TGCA 1 cut(s) 69
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 1009
HpyF3I CTNAG 3 cut(s) 78, 963, 1179
HpySE526I ACGT 2 cut(s) 417, 855
Hsp92I GRCGYC 1 cut(s) 855
Hsp92II CATG 7 cut(s) 56, 69, 542, 604, 676, 895, 1153
Ksp22I TGATCA 2 cut(s) 550, 612
Kzo9I GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 5 cut(s) 826, 837, 1025, 1038, 1163
MaeI CTAG 4 cut(s) 59, 281, 761, 1079
MaeII ACGT 2 cut(s) 417, 855
MaeIII GTNAC 3 cut(s) 85, 233, 856
MalI GATC 9 cut(s) 552, 579, 614, 647, 657, 759, 791, 902, 927
MboI GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
MboII GAAGA 8 cut(s) 239, 401, 436, 764, 767, 962, 1166, 1202
MflI RGATCY 1 cut(s) 757
MhlI GDGCHC 3 cut(s) 183, 1014, 1200
MluCI AATT 4 cut(s) 252, 526, 861, 953
MlyI GAGTC 4 cut(s) 43, 393, 413, 678
MmeI TCCRAC 5 cut(s) 756, 876, 917, 999, 1141
MnlI CCTC 8 cut(s) 136, 217, 489, 599, 787, 960, 991, 1200
MroXI GAANNNNTTC 1 cut(s) 957
MseI TTAA 5 cut(s) 557, 698, 842, 1089, 1169
MslI CAYNNNNRTG 1 cut(s) 1148
MspI CCGG 4 cut(s) 93, 318, 475, 1047
MspR9I CCNGG 1 cut(s) 1047
MwoI GCNNNNNNNGC 2 cut(s) 172, 1009
NciI CCSGG 1 cut(s) 1047
NdeII GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
NlaIII CATG 7 cut(s) 56, 69, 542, 604, 676, 895, 1153
NlaIV GGNNCC 2 cut(s) 424, 730
NmuCI GTSAC 3 cut(s) 85, 233, 856
NspI RCATGY 2 cut(s) 69, 542
PagI TCATGA 1 cut(s) 52
PaqCI CACCTGC 1 cut(s) 826
PceI AGGCCT 1 cut(s) 1083
PciI ACATGT 1 cut(s) 538
PciSI GCTCTTC 1 cut(s) 384
PdmI GAANNNNTTC 1 cut(s) 957
PfeI GAWTC 3 cut(s) 712, 744, 1062
PfoI TCCNGGA 1 cut(s) 1045
PinAI ACCGGT 1 cut(s) 92
PleI GAGTC 4 cut(s) 43, 392, 412, 677
PpsI GAGTC 4 cut(s) 43, 392, 412, 677
PscI ACATGT 1 cut(s) 538
Psp124BI GAGCTC 3 cut(s) 183, 1014, 1200
PspN4I GGNNCC 2 cut(s) 424, 730
PsuI RGATCY 1 cut(s) 757
RsaI GTAC 4 cut(s) 706, 776, 1188, 1203
RsaNI GTAC 4 cut(s) 705, 775, 1187, 1202
RseI CAYNNNNRTG 1 cut(s) 1148
SacI GAGCTC 3 cut(s) 183, 1014, 1200
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 5 cut(s) 557, 698, 842, 1089, 1169
Sau3AI GATC 9 cut(s) 550, 577, 612, 645, 655, 757, 789, 900, 925
SchI GAGTC 4 cut(s) 43, 393, 413, 678
ScrFI CCNGG 1 cut(s) 1047
SduI GDGCHC 3 cut(s) 183, 1014, 1200
SmiMI CAYNNNNRTG 1 cut(s) 1148
SmlI CTYRAG 4 cut(s) 44, 176, 1073, 1193
SmoI CTYRAG 4 cut(s) 44, 176, 1073, 1193
Sse9I AATT 4 cut(s) 252, 526, 861, 953
SseBI AGGCCT 1 cut(s) 1083
SspMI CTAG 4 cut(s) 59, 281, 761, 1079
SstI GAGCTC 3 cut(s) 183, 1014, 1200
StuI AGGCCT 1 cut(s) 1083
StyD4I CCNGG 1 cut(s) 1045
StyI CCWWGG 2 cut(s) 426, 1056
TaiI ACGT 2 cut(s) 420, 858
TaqI TCGA 7 cut(s) 73, 372, 387, 494, 715, 792, 1008
TasI AATT 4 cut(s) 252, 526, 861, 953
TfiI GAWTC 3 cut(s) 712, 744, 1062
Tru1I TTAA 5 cut(s) 557, 698, 842, 1089, 1169
Tru9I TTAA 5 cut(s) 557, 698, 842, 1089, 1169
TscAI CASTG 2 cut(s) 319, 601
TseFI GTSAC 3 cut(s) 85, 233, 856
Tsp45I GTSAC 3 cut(s) 85, 233, 856
TspDTI ATGAA 4 cut(s) 173, 515, 946, 1202
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 319, 601
XapI RAATTY 2 cut(s) 252, 953
XbaI TCTAGA 1 cut(s) 760
XceI RCATGY 2 cut(s) 69, 542
XmnI GAANNNNTTC 1 cut(s) 957
XspI CTAG 4 cut(s) 59, 281, 761, 1079
ZraI GACGTC 1 cut(s) 856
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.