AT1G13100

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4463859 .. 4465725
1867 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13100.1

Sequence Viewer

Length: 1473 bp
ATGGCAATCATCCTCTGTTTCCTCATTCTCTTACCCCTTATCTTAATCTTCTTGAAAAAACTCAAACATTCGAAATGGAAGCTTCCTCCGGGGCCACCAAAGCTTCCGTTCATTGGAAACTTACACCAACTCCAAGAACTACCTCCCAGGAATCTCAACCACAAGTACGGGCCAGTGATACTTCTCCGTTTCGGATTCGTCCCCTTGGTCGTGATCTCATCTAAAGAAGCAGCAGAGGAAGTTCTCAAGATTCACGATCTTGAATGTTGTAGCCGACCAGAGACGGCCGGGACTAGAAAGATCTCTTACAACTTTAAAGACATCGGATTCGCGCCTTACGGTGAGGAATGGAAGGCCATGCGAAAGCTCTCGGTGGTCGAACTCTTCACCGCCAAAAAACATCAGTATTTTAGGTCTATCAGAGAGGAAGAGAATGACTTGTTGGTCAAGAAACTAACAGAATTGGCTCTGACACGATCCCCGGTGAATTTGAAGAAGACCCTTTTCACTTTAGTCGGGAGTATTGTGTGTCGGATCGGATTCGGGTTTAATCTTCATGAGTGTGAGTTCATCGATGAAAATAGCATCTCCGACCTTGTTGACAAGTCTGAGATACTTGAGATGACTTCTATGTTCTCTGATTTCTTTCCAGGAGGAATCGGTAGATTCATCGATTGGATCTCCGGTCAAAACAAGCGATTCGATAATGTTTTCTCGGACCTCGACACTTTCTTTCAAAACATTCTTGATTATCATCTTAAGCCTGGAAGAAAAGTAGCAGATAGCTCTGATATAATCGACGTGGTGATCAACATGATAAAGAAGCAAGAGAAAGATGGAGACTCTTTCAAGCTCACAACGGATCATCTTAAAGGGATGATCTCGGACATATTTCTAGCTGGAGTTAGCACAAGTGCCTCCACACTGATATGGGCGATAACAGAGTTAGTTAGGAACCGTAAAGTGATGAAGAAAGTGCAAGAAGAGATTAGGACAACACTCGGAGACAAGAAGGAGAGAATCACAGAGCAAGATCTCACCAATCTCCATTACTTCAAGCTTGTGGTCAAAGAGATATTCAGATTACACCCAGCAGTTCCATTTTTGCTACCAAGAGAGACATTATCTCATGTCAAGATTCAAGGCTACGACATTCCCGCCAAAACCCAGATCATGATCAACGTCTATGCGATTGCTCGCGATCCAAAACTTTGGACAAACCCAGATGAGTTTAACCCTGACAGGTTCCTAGACAGTTCCATAGATTACAAAGGACTAAATTTTGAACTGTTACCGTTTGGGTCTGGTAGGAGAATCTGTCCAGGAATGACGATGGGAATCACACTTGTTGAATTTGCTTTATTGAATTTGCTTTACTTCTTTGATTGGGGTTTGCCGGAGAAGGAAGAGGCGGACAAGATCATCACCGGCAATGGAGTTGCTGTTGGCCTAGTTCAAGTTCTTCTCCACTGA
Functional Annotation

Protein Analysis

490

Amino Acids

56.0

Weight (kDa)

8.06

Isoelectric Point (pI)

34.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 29 - 479 2.1e-95 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 443
AccII CGCG 2 cut(s) 332, 1200
AciI CCGC 3 cut(s) 390, 1158, 1412
AclWI GGATC 5 cut(s) 471, 542, 686, 870, 1196
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 4 cut(s) 487, 1279, 1352, 1366
AfaI GTAC 1 cut(s) 167
AfiI CCNNNNNNNGG 1 cut(s) 113
AflII CTTAAG 1 cut(s) 758
AjiI CACGTC 1 cut(s) 802
AjnI CCWGG 4 cut(s) 146, 649, 763, 1321
AjuI GAANNNNNNNTTGG 2 cut(s) 425, 457
AluBI AGCT 7 cut(s) 82, 103, 367, 786, 853, 899, 1060
AluI AGCT 7 cut(s) 82, 103, 367, 786, 853, 899, 1060
Alw26I GTCTC 4 cut(s) 275, 834, 999, 1112
AlwI GGATC 5 cut(s) 471, 542, 686, 870, 1196
AoxI GGCC 5 cut(s) 92, 170, 285, 354, 1447
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 4 cut(s) 487, 1279, 1352, 1366
ArsI GACNNNNNNTTYG 2 cut(s) 311, 343
AspLEI GCGC 1 cut(s) 334
AspS9I GGNCC 3 cut(s) 92, 170, 718
AsuC2I CCSGG 3 cut(s) 90, 289, 482
AsuHPI GGTGA 6 cut(s) 353, 379, 496, 817, 1030, 1417
AsuII TTCGAA 1 cut(s) 71
AvaII GGWCC 1 cut(s) 718
BbsI GAAGAC 1 cut(s) 503
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 830, 1327
BceAI ACGGC 1 cut(s) 300
BciT130I CCWGG 4 cut(s) 148, 651, 765, 1323
BclI TGATCA 2 cut(s) 807, 1176
BcnI CCSGG 3 cut(s) 90, 289, 482
BcoDI GTCTC 4 cut(s) 275, 834, 999, 1112
BfaI CTAG 4 cut(s) 294, 896, 1250, 1451
BfrI CTTAAG 1 cut(s) 758
BglII AGATCT 2 cut(s) 300, 1033
BisI GCNGC 1 cut(s) 231
BlsI GCNGC 1 cut(s) 232
Bme1390I CCNGG 7 cut(s) 90, 148, 289, 482, 651, 765, 1323
Bme18I GGWCC 1 cut(s) 718
BmgBI CACGTC 1 cut(s) 802
BmgT120I GGNCC 3 cut(s) 92, 170, 718
BmiI GGNNCC 3 cut(s) 93, 956, 1247
BmrFI CCNGG 7 cut(s) 90, 148, 289, 482, 651, 765, 1323
BmsI GCATC 1 cut(s) 594
BpiI GAAGAC 1 cut(s) 503
BpmI CTGGAG 1 cut(s) 921
Bpu14I TTCGAA 1 cut(s) 71
BpuEI CTTGAG 2 cut(s) 230, 638
BpuMI CCSGG 3 cut(s) 90, 289, 482
Bsa29I ATCGAT 2 cut(s) 573, 672
BsaBI GATNNNNATC 3 cut(s) 753, 1175, 1337
BsaJI CCNNGG 4 cut(s) 89, 146, 204, 480
BsaWI WCCGGW 1 cut(s) 683
BsaXI ACNNNNNCTCC 6 cut(s) 114, 144, 1303, 1333, 1428, 1458
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse118I RCCGGY 1 cut(s) 1427
Bse1I ACTGG 1 cut(s) 173
Bse3DI GCAATG 1 cut(s) 1438
Bse8I GATNNNNATC 3 cut(s) 753, 1175, 1337
BseBI CCWGG 4 cut(s) 148, 651, 765, 1323
BseCI ATCGAT 2 cut(s) 573, 672
BseDI CCNNGG 4 cut(s) 89, 146, 204, 480
BseGI GGATG 2 cut(s) 9, 882
BseJI GATNNNNATC 3 cut(s) 753, 1175, 1337
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 1438
BseMII CTCAG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 173
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 1 cut(s) 242
BseYI CCCAGC 1 cut(s) 1090
Bsh1236I CGCG 2 cut(s) 332, 1200
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 5 cut(s) 94, 172, 287, 356, 1449
BshVI ATCGAT 2 cut(s) 573, 672
BsiEI CGRYCG 1 cut(s) 288
BsiSI CCGG 6 cut(s) 89, 288, 482, 684, 1397, 1428
BslFI GGGAC 2 cut(s) 185, 304
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 4 cut(s) 275, 834, 999, 1112
BsmBI CGTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 185, 304
BsnI GGCC 5 cut(s) 94, 172, 287, 356, 1449
Bsp119I TTCGAA 1 cut(s) 71
Bsp68I TCGCGA 1 cut(s) 1200
BspACI CCGC 3 cut(s) 390, 1158, 1412
BspANI GGCC 5 cut(s) 94, 172, 287, 356, 1449
BspCNI CTCAG 1 cut(s) 601
BspDI ATCGAT 2 cut(s) 573, 672
BspFNI CGCG 2 cut(s) 332, 1200
BspHI TCATGA 2 cut(s) 556, 1173
BspLI GGNNCC 3 cut(s) 93, 956, 1247
BspPI GGATC 5 cut(s) 471, 542, 686, 870, 1196
BspT104I TTCGAA 1 cut(s) 71
BspTI CTTAAG 1 cut(s) 758
BsrDI GCAATG 1 cut(s) 1438
BsrFI RCCGGY 1 cut(s) 1427
BsrI ACTGG 1 cut(s) 173
BssAI RCCGGY 1 cut(s) 1427
BssECI CCNNGG 4 cut(s) 89, 146, 204, 480
BssT1I CCWWGG 1 cut(s) 204
Bst2UI CCWGG 4 cut(s) 148, 651, 765, 1323
Bst4CI ACNGT 5 cut(s) 341, 959, 1256, 1290, 1296
Bst6I CTCTTC 4 cut(s) 389, 423, 978, 1401
BstAFI CTTAAG 1 cut(s) 758
BstBI TTCGAA 1 cut(s) 71
BstC8I GCNNGC 1 cut(s) 1198
BstDEI CTNAG 1 cut(s) 609
BstF5I GGATG 2 cut(s) 9, 882
BstFNI CGCG 2 cut(s) 332, 1200
BstHHI GCGC 1 cut(s) 334
BstMAI GTCTC 4 cut(s) 275, 834, 999, 1112
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 100
BstNI CCWGG 4 cut(s) 148, 651, 765, 1323
BstSCI CCNGG 7 cut(s) 88, 146, 287, 480, 649, 763, 1321
BstUI CGCG 2 cut(s) 332, 1200
BstV1I GCAGC 1 cut(s) 242
BstV2I GAAGAC 1 cut(s) 503
BstX2I RGATCY 3 cut(s) 300, 678, 1033
BstXI CCANNNNNNTGG 1 cut(s) 1212
BstYI RGATCY 3 cut(s) 300, 678, 1033
BstZI CGGCCG 1 cut(s) 285
Bsu15I ATCGAT 2 cut(s) 573, 672
BsuRI GGCC 5 cut(s) 94, 172, 287, 356, 1449
BsuTUI ATCGAT 2 cut(s) 573, 672
BtrI CACGTC 1 cut(s) 802
BtsCI GGATG 2 cut(s) 9, 882
BtsIMutI CAGTG 3 cut(s) 180, 923, 1468
BtuMI TCGCGA 1 cut(s) 1200
Cac8I GCNNGC 1 cut(s) 1198
CciI TCATGA 2 cut(s) 556, 1173
CfoI GCGC 1 cut(s) 334
Cfr10I RCCGGY 1 cut(s) 1427
Cfr13I GGNCC 3 cut(s) 92, 170, 718
ClaI ATCGAT 2 cut(s) 573, 672
Csp6I GTAC 1 cut(s) 166
CviAII CATG 5 cut(s) 358, 557, 814, 1130, 1174
CviQI GTAC 1 cut(s) 166
DdeI CTNAG 1 cut(s) 609
DraI TTTAAA 1 cut(s) 316
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
Eam1104I CTCTTC 4 cut(s) 389, 423, 978, 1401
EarI CTCTTC 4 cut(s) 389, 423, 978, 1401
EciI GGCGGA 1 cut(s) 1427
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 1 cut(s) 204
Eco47I GGWCC 1 cut(s) 718
Eco52I CGGCCG 1 cut(s) 285
EcoRII CCWGG 4 cut(s) 146, 649, 763, 1321
EcoT14I CCWWGG 1 cut(s) 204
ErhI CCWWGG 1 cut(s) 204
Esp3I CGTCTC 1 cut(s) 275
FaeI CATG 5 cut(s) 361, 560, 817, 1133, 1177
FaqI GGGAC 2 cut(s) 185, 304
FatI CATG 5 cut(s) 357, 556, 813, 1129, 1173
FauI CCCGC 1 cut(s) 1165
FbaI TGATCA 2 cut(s) 807, 1176
Fnu4HI GCNGC 1 cut(s) 231
FokI GGATG 1 cut(s) 889
Fsp4HI GCNGC 1 cut(s) 231
FspBI CTAG 4 cut(s) 294, 896, 1250, 1451
GlaI GCGC 1 cut(s) 333
GluI GCNGC 1 cut(s) 231
GsaI CCCAGC 1 cut(s) 1094
GsuI CTGGAG 1 cut(s) 921
HaeIII GGCC 5 cut(s) 94, 172, 287, 356, 1449
HapII CCGG 6 cut(s) 89, 288, 482, 684, 1397, 1428
HhaI GCGC 1 cut(s) 334
Hin1II CATG 5 cut(s) 361, 560, 817, 1133, 1177
Hin6I GCGC 1 cut(s) 332
HinP1I GCGC 1 cut(s) 332
HincII GTYRAC 1 cut(s) 601
HindII GTYRAC 1 cut(s) 601
HindIII AAGCTT 3 cut(s) 80, 101, 1058
HpaII CCGG 6 cut(s) 89, 288, 482, 684, 1397, 1428
HphI GGTGA 6 cut(s) 353, 379, 496, 817, 1030, 1417
Hpy166II GTNNAC 1 cut(s) 601
Hpy8I GTNNAC 1 cut(s) 601
Hpy99I CGWCG 1 cut(s) 803
HpyAV CCTTC 3 cut(s) 346, 1006, 1396
HpyCH4III ACNGT 5 cut(s) 341, 959, 1256, 1290, 1296
HpyCH4IV ACGT 2 cut(s) 801, 1182
HpyCH4V TGCA 1 cut(s) 979
HpyF10VI GCNNNNNNNGC 1 cut(s) 100
HpyF3I CTNAG 1 cut(s) 609
HpySE526I ACGT 2 cut(s) 801, 1182
Hsp92II CATG 5 cut(s) 361, 560, 817, 1133, 1177
HspAI GCGC 1 cut(s) 332
Ksp22I TGATCA 2 cut(s) 807, 1176
Lsp1109I GCAGC 1 cut(s) 242
LweI GCATC 1 cut(s) 594
MaeI CTAG 4 cut(s) 294, 896, 1250, 1451
MaeII ACGT 2 cut(s) 801, 1182
MaeIII GTNAC 1 cut(s) 1290
MflI RGATCY 3 cut(s) 300, 678, 1033
MluCI AATT 5 cut(s) 461, 487, 1279, 1352, 1366
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 2 cut(s) 512, 615
MseI TTAA 6 cut(s) 44, 315, 549, 759, 870, 1233
MslI CAYNNNNRTG 2 cut(s) 561, 928
MspCI CTTAAG 1 cut(s) 758
MspI CCGG 6 cut(s) 89, 288, 482, 684, 1397, 1428
MspR9I CCNGG 7 cut(s) 90, 148, 289, 482, 651, 765, 1323
MvaI CCWGG 4 cut(s) 148, 651, 765, 1323
MvnI CGCG 2 cut(s) 332, 1200
MwoI GCNNNNNNNGC 1 cut(s) 100
NciI CCSGG 3 cut(s) 90, 289, 482
NlaIII CATG 5 cut(s) 361, 560, 817, 1133, 1177
NlaIV GGNNCC 3 cut(s) 93, 956, 1247
NruI TCGCGA 1 cut(s) 1200
NspV TTCGAA 1 cut(s) 71
PagI TCATGA 2 cut(s) 556, 1173
PfoI TCCNGGA 2 cut(s) 649, 1321
PkrI GCNGC 1 cut(s) 232
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
Psp6I CCWGG 4 cut(s) 146, 649, 763, 1321
PspFI CCCAGC 1 cut(s) 1090
PspGI CCWGG 4 cut(s) 146, 649, 763, 1321
PspN4I GGNNCC 3 cut(s) 93, 956, 1247
PspPI GGNCC 3 cut(s) 92, 170, 718
PsuI RGATCY 3 cut(s) 300, 678, 1033
RruI TCGCGA 1 cut(s) 1200
RsaI GTAC 1 cut(s) 167
RsaNI GTAC 1 cut(s) 166
RseI CAYNNNNRTG 2 cut(s) 561, 928
SaqAI TTAA 6 cut(s) 44, 315, 549, 759, 870, 1233
SatI GCNGC 1 cut(s) 231
Sau96I GGNCC 3 cut(s) 92, 170, 718
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 7 cut(s) 90, 148, 289, 482, 651, 765, 1323
SfaNI GCATC 1 cut(s) 594
SfuI TTCGAA 1 cut(s) 71
SinI GGWCC 1 cut(s) 718
SmiMI CAYNNNNRTG 2 cut(s) 561, 928
SmlI CTYRAG 3 cut(s) 245, 617, 758
SmoI CTYRAG 3 cut(s) 245, 617, 758
Sse9I AATT 5 cut(s) 461, 487, 1279, 1352, 1366
SsiI CCGC 3 cut(s) 390, 1158, 1412
SspMI CTAG 4 cut(s) 294, 896, 1250, 1451
StyD4I CCNGG 7 cut(s) 88, 146, 287, 480, 649, 763, 1321
StyI CCWWGG 1 cut(s) 204
TaaI ACNGT 5 cut(s) 341, 959, 1256, 1290, 1296
TaiI ACGT 2 cut(s) 804, 1185
TaqI TCGA 7 cut(s) 71, 378, 573, 672, 702, 723, 798
TasI AATT 5 cut(s) 461, 487, 1279, 1352, 1366
Tru1I TTAA 6 cut(s) 44, 315, 549, 759, 870, 1233
Tru9I TTAA 6 cut(s) 44, 315, 549, 759, 870, 1233
TscAI CASTG 2 cut(s) 180, 930
TseI GCWGC 1 cut(s) 230
TspDTI ATGAA 6 cut(s) 100, 545, 559, 591, 658, 983
TspGWI ACGGA 3 cut(s) 96, 176, 875
TspRI CASTG 2 cut(s) 180, 930
Vha464I CTTAAG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 718
XapI RAATTY 4 cut(s) 487, 1279, 1352, 1366
XspI CTAG 4 cut(s) 294, 896, 1250, 1451
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.