Rmu_sc0009481.1_g000005

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0009481.1
OG0000354
Physical Location & Seq
Reverse (-)
29840 .. 32237
2398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0009481.1_g000005.1.cds

Sequence Viewer

Length: 1332 bp
atgctcctacacctcggtcgcataccgaccctcatcatctcatcagctgaagcagcaaaacaggtcttgaaagataatgatctcaactgctgcagcagaccctcctcctcggggtctcgaaaactcacctacaactatatagacatgggatttgcgccttatggtgagtattggcgagaaatgagaaaactatgtatgcttgagcttttcagtgtgaaaagggtgcagtcttatcggttgattagggaagaagaagtggctaaaatgattgactcaatatccaaagaatctgcatcttcgtcctctaattcatgtgttaatattactgagaagttgtatgctgtcatgggcagtataactttcagggttattttcgggacaagtttcgagggaagtgatttcgagcacgataggtttcatcaagtgcttcatgaagctgaaatcatgcttgcaggcttctctgcagctgattattttccatctataattgggtatcttatagacaggatctccgggaaacataaacaatttgaaagggtatccggggaacttcatcacttttttcagcaggtgattgatgatcatctcaagccagggaggacacaaccagagcatgaagacatagttgatgtgttgcttaaaatagtgaaggagcaaactggttttggagctgctcattttggtcatgataacatcaaggcacttcttgtgaacttatttctaggtggaatagatactggtgcaattaccatgctgtgggcgatggctgagctagctaagaatcctagactgatgaagaaagcacaggatgaagttagaagctgcgttggaaacaaaggaaaagtctctgaaagtgatacggaacagcttccgtacctcaagatgataatcaaagaaacacttcgactgcatcctccagctcccctgatgctgccgagagagtccatgtccccctttaaagtccttgggtatgatgttgaacccaatacactaatcataattaatgactgggcaatttcacgagatccagaattttggaaagacccagaagagttcatcccagaaaggtttgatgatagctctgtcgattttagggggcaacacttcgagttcttgccatttggagctggtcggagaatttgtccgggaatttacatggcaacaacaactgtggagcttggacttgcaaatctgctgtacagctttgattggaaatcgccagagggaatgaaagaagctgatatcaacatggaagaaacaactggggaactttccctaacaatctccaagaaaactgctctcaaccttgtccccgtgaagttttcttgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

443

Amino Acids

50.14

Weight (kDa)

5.7

Isoelectric Point (pI)

38.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 559
Acc36I ACCTGC 1 cut(s) 559
AccB7I CCANNNNNTGG 1 cut(s) 756
AclWI GGATC 2 cut(s) 515, 1019
AcsI RAATTY 3 cut(s) 1031, 1137, 1149
AcuI CTGAAG 1 cut(s) 69
AfaI GTAC 2 cut(s) 875, 1199
AfiI CCNNNNNNNGG 2 cut(s) 111, 756
AgsI TTSAA 3 cut(s) 70, 533, 980
AjnI CCWGG 1 cut(s) 592
Alw21I GWGCWC 1 cut(s) 408
Alw26I GTCTC 2 cut(s) 120, 850
AlwI GGATC 2 cut(s) 515, 1019
Ama87I CYCGRG 1 cut(s) 109
ApeKI GCWGC 7 cut(s) 53, 90, 93, 464, 671, 822, 931
ApoI RAATTY 3 cut(s) 1031, 1137, 1149
ArsI GACNNNNNNTTYG 4 cut(s) 134, 166, 828, 860
AseI ATTAAT 1 cut(s) 1002
Asp700I GAANNNNTTC 2 cut(s) 867, 900
AspLEI GCGC 1 cut(s) 157
AsuC2I CCSGG 3 cut(s) 514, 544, 1146
AsuHPI GGTGA 3 cut(s) 118, 176, 583
AsuNHI GCTAGC 1 cut(s) 772
AvaI CYCGRG 1 cut(s) 109
BauI CACGAG 1 cut(s) 1020
BbsI GAAGAC 1 cut(s) 624
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 7 cut(s) 65, 77, 105, 476, 658, 809, 918
BccI CCATC 2 cut(s) 487, 757
BcgI CGANNNNNNTGC 2 cut(s) 215, 249
BciT130I CCWGG 1 cut(s) 594
BciVI GTATCC 1 cut(s) 550
BclI TGATCA 1 cut(s) 580
BcnI CCSGG 3 cut(s) 514, 544, 1146
BcoDI GTCTC 2 cut(s) 120, 850
BfaI CTAG 3 cut(s) 722, 773, 786
BfmI CTRYAG 2 cut(s) 91, 462
BfuAI ACCTGC 1 cut(s) 559
BfuI GTATCC 1 cut(s) 550
BisI GCNGC 7 cut(s) 54, 91, 94, 465, 672, 823, 932
BlpI GCTNAGC 1 cut(s) 768
BlsI GCNGC 7 cut(s) 55, 92, 95, 466, 673, 824, 933
Bme1390I CCNGG 4 cut(s) 514, 544, 594, 1146
BmeT110I CYCGRG 1 cut(s) 109
BmrFI CCNGG 4 cut(s) 514, 544, 594, 1146
BmrI ACTGGG 2 cut(s) 1018, 1272
BmsI GCATC 3 cut(s) 302, 918, 919
BmtI GCTAGC 1 cut(s) 776
BmuI ACTGGG 2 cut(s) 1018, 1272
BpiI GAAGAC 1 cut(s) 624
BpmI CTGGAG 1 cut(s) 900
Bpu1102I GCTNAGC 1 cut(s) 768
BpuEI CTTGAG 3 cut(s) 221, 572, 863
BpuMI CCSGG 3 cut(s) 514, 544, 1146
BsaBI GATNNNNATC 3 cut(s) 78, 582, 887
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 5 cut(s) 13, 108, 543, 593, 964
BsaXI ACNNNNNCTCC 4 cut(s) 494, 524, 1126, 1156
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 756
Bse1I ACTGG 4 cut(s) 664, 742, 1013, 1267
Bse8I GATNNNNATC 3 cut(s) 78, 582, 887
BseBI CCWGG 1 cut(s) 594
BseDI CCNNGG 5 cut(s) 13, 108, 543, 593, 964
BseGI GGATG 3 cut(s) 814, 910, 1056
BseJI GATNNNNATC 3 cut(s) 78, 582, 887
BseLI CCNNNNNNNGG 2 cut(s) 111, 756
BseMII CTCAG 2 cut(s) 318, 759
BseNI ACTGG 4 cut(s) 664, 742, 1013, 1267
BseRI GAGGAG 2 cut(s) 94, 97
BseXI GCAGC 7 cut(s) 65, 77, 105, 476, 658, 809, 918
BsgI GTGCAG 1 cut(s) 245
Bsh1285I CGRYCG 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 109
BsiSI CCGG 3 cut(s) 513, 543, 1145
BslFI GGGAC 3 cut(s) 391, 934, 1295
BslI CCNNNNNNNGG 2 cut(s) 111, 756
BsmAI GTCTC 2 cut(s) 120, 850
BsmFI GGGAC 3 cut(s) 391, 934, 1295
Bso31I GGTCTC 1 cut(s) 120
BsoBI CYCGRG 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 408
Bsp1407I TGTACA 1 cut(s) 1197
Bsp143I GATC 4 cut(s) 79, 507, 580, 1024
Bsp1720I GCTNAGC 1 cut(s) 768
BspCNI CTCAG 2 cut(s) 319, 760
BspHI TCATGA 2 cut(s) 430, 685
BspMAI CTGCAG 2 cut(s) 95, 466
BspMI ACCTGC 1 cut(s) 559
BspOI GCTAGC 1 cut(s) 776
BspPI GGATC 2 cut(s) 515, 1019
BspTNI GGTCTC 1 cut(s) 120
BsrGI TGTACA 1 cut(s) 1197
BsrI ACTGG 4 cut(s) 664, 742, 1013, 1267
BssECI CCNNGG 5 cut(s) 13, 108, 543, 593, 964
BssMI GATC 4 cut(s) 79, 507, 580, 1024
BssSI CACGAG 1 cut(s) 1020
BssT1I CCWWGG 1 cut(s) 964
Bst2BI CACGAG 1 cut(s) 1020
Bst2UI CCWGG 1 cut(s) 594
Bst4CI ACNGT 1 cut(s) 1171
Bst6I CTCTTC 1 cut(s) 1044
BstAUI TGTACA 1 cut(s) 1197
BstC8I GCNNGC 3 cut(s) 450, 454, 774
BstDEI CTNAG 3 cut(s) 327, 768, 777
BstF5I GGATG 3 cut(s) 814, 910, 1056
BstHHI GCGC 1 cut(s) 157
BstKTI GATC 4 cut(s) 82, 510, 583, 1027
BstMAI GTCTC 2 cut(s) 120, 850
BstMBI GATC 4 cut(s) 79, 507, 580, 1024
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 2 cut(s) 53, 773
BstNI CCWGG 1 cut(s) 594
BstSCI CCNGG 4 cut(s) 512, 542, 592, 1144
BstSFI CTRYAG 2 cut(s) 91, 462
BstV1I GCAGC 7 cut(s) 65, 77, 105, 476, 658, 809, 918
BstV2I GAAGAC 1 cut(s) 624
BstX2I RGATCY 2 cut(s) 507, 1024
BstXI CCANNNNNNTGG 1 cut(s) 1035
BstYI RGATCY 2 cut(s) 507, 1024
BsuI GTATCC 1 cut(s) 550
BtgZI GCGATG 1 cut(s) 776
BtsCI GGATG 3 cut(s) 814, 910, 1056
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 559
Cac8I GCNNGC 3 cut(s) 450, 454, 774
CciI TCATGA 2 cut(s) 430, 685
CfoI GCGC 1 cut(s) 157
Csp6I GTAC 2 cut(s) 874, 1198
CspCI CAANNNNNGTGG 2 cut(s) 1152, 1187
CviQI GTAC 2 cut(s) 874, 1198
DdeI CTNAG 3 cut(s) 327, 768, 777
DpnI GATC 4 cut(s) 81, 509, 582, 1026
DpnII GATC 4 cut(s) 79, 507, 580, 1024
DraI TTTAAA 1 cut(s) 958
Eam1104I CTCTTC 1 cut(s) 1044
EarI CTCTTC 1 cut(s) 1044
Eco130I CCWWGG 1 cut(s) 964
Eco31I GGTCTC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 1243
Eco57I CTGAAG 1 cut(s) 69
Eco88I CYCGRG 1 cut(s) 109
EcoRII CCWGG 1 cut(s) 592
EcoRV GATATC 1 cut(s) 1243
EcoT14I CCWWGG 1 cut(s) 964
ErhI CCWWGG 1 cut(s) 964
FalI AAGNNNNNCTT 2 cut(s) 885, 917
FaqI GGGAC 3 cut(s) 391, 934, 1295
FbaI TGATCA 1 cut(s) 580
Fnu4HI GCNGC 7 cut(s) 54, 91, 94, 465, 672, 823, 932
FokI GGATG 3 cut(s) 821, 897, 1043
Fsp4HI GCNGC 7 cut(s) 54, 91, 94, 465, 672, 823, 932
FspBI CTAG 3 cut(s) 722, 773, 786
GlaI GCGC 1 cut(s) 156
GluI GCNGC 7 cut(s) 54, 91, 94, 465, 672, 823, 932
GsuI CTGGAG 1 cut(s) 900
HapII CCGG 3 cut(s) 513, 543, 1145
HhaI GCGC 1 cut(s) 157
Hin6I GCGC 1 cut(s) 155
HinP1I GCGC 1 cut(s) 155
HinfI GANTC 4 cut(s) 272, 287, 781, 941
HpaII CCGG 3 cut(s) 513, 543, 1145
HphI GGTGA 3 cut(s) 118, 176, 583
Hpy166II GTNNAC 1 cut(s) 712
Hpy188I TCNGA 2 cut(s) 850, 1134
Hpy188III TCNNGA 8 cut(s) 67, 117, 376, 431, 686, 880, 1020, 1028
Hpy8I GTNNAC 1 cut(s) 712
HpyAV CCTTC 1 cut(s) 643
HpyCH4III ACNGT 1 cut(s) 1171
HpyCH4V TGCA 8 cut(s) 93, 226, 293, 452, 464, 743, 910, 1187
HpyF10VI GCNNNNNNNGC 2 cut(s) 53, 773
HpyF3I CTNAG 3 cut(s) 327, 768, 777
HspAI GCGC 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 580
Kzo9I GATC 4 cut(s) 79, 507, 580, 1024
LmnI GCTCC 6 cut(s) 9, 652, 668, 925, 1124, 1174
Lsp1109I GCAGC 7 cut(s) 65, 77, 105, 476, 658, 809, 918
LweI GCATC 3 cut(s) 302, 918, 919
MaeI CTAG 3 cut(s) 722, 773, 786
MalI GATC 4 cut(s) 81, 509, 582, 1026
MboI GATC 4 cut(s) 79, 507, 580, 1024
MboII GAAGA 7 cut(s) 260, 263, 288, 629, 808, 1061, 1265
MflI RGATCY 2 cut(s) 507, 1024
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 9 cut(s) 307, 486, 527, 744, 999, 1014, 1031, 1137, 1149
MlyI GAGTC 2 cut(s) 266, 950
MmeI TCCRAC 2 cut(s) 808, 1112
MroXI GAANNNNTTC 2 cut(s) 867, 900
MseI TTAA 4 cut(s) 318, 639, 957, 1002
MspA1I CMGCKG 2 cut(s) 47, 467
MspI CCGG 3 cut(s) 513, 543, 1145
MspR9I CCNGG 4 cut(s) 514, 544, 594, 1146
MvaI CCWGG 1 cut(s) 594
MwoI GCNNNNNNNGC 2 cut(s) 53, 773
NciI CCSGG 3 cut(s) 514, 544, 1146
NdeII GATC 4 cut(s) 79, 507, 580, 1024
NheI GCTAGC 1 cut(s) 772
NmeAIII GCCGAG 1 cut(s) 960
PagI TCATGA 2 cut(s) 430, 685
PaqCI CACCTGC 1 cut(s) 559
PdmI GAANNNNTTC 2 cut(s) 867, 900
PfeI GAWTC 2 cut(s) 287, 781
PflMI CCANNNNNTGG 1 cut(s) 756
PfoI TCCNGGA 2 cut(s) 512, 1144
PkrI GCNGC 7 cut(s) 55, 92, 95, 466, 673, 824, 933
PleI GAGTC 2 cut(s) 266, 949
PpsI GAGTC 2 cut(s) 266, 949
PshBI ATTAAT 1 cut(s) 1002
Psp6I CCWGG 1 cut(s) 592
PspGI CCWGG 1 cut(s) 592
PstI CTGCAG 2 cut(s) 95, 466
PsuI RGATCY 2 cut(s) 507, 1024
PvuII CAGCTG 2 cut(s) 47, 467
RsaI GTAC 2 cut(s) 875, 1199
RsaNI GTAC 2 cut(s) 874, 1198
SaqAI TTAA 4 cut(s) 318, 639, 957, 1002
SatI GCNGC 7 cut(s) 54, 91, 94, 465, 672, 823, 932
Sau3AI GATC 4 cut(s) 79, 507, 580, 1024
SchI GAGTC 2 cut(s) 266, 950
ScrFI CCNGG 4 cut(s) 514, 544, 594, 1146
SduI GDGCHC 1 cut(s) 408
SfaNI GCATC 3 cut(s) 302, 918, 919
SfcI CTRYAG 2 cut(s) 91, 462
SmlI CTYRAG 3 cut(s) 200, 587, 878
SmoI CTYRAG 3 cut(s) 200, 587, 878
Sse9I AATT 9 cut(s) 307, 486, 527, 744, 999, 1014, 1031, 1137, 1149
SspI AATATT 1 cut(s) 322
SspMI CTAG 3 cut(s) 722, 773, 786
StyD4I CCNGG 4 cut(s) 512, 542, 592, 1144
StyI CCWWGG 1 cut(s) 964
TaaI ACNGT 1 cut(s) 1171
TaqI TCGA 6 cut(s) 118, 387, 402, 904, 1086, 1107
TaqII GACCGA 1 cut(s) 5
TasI AATT 9 cut(s) 307, 486, 527, 744, 999, 1014, 1031, 1137, 1149
TatI WGTACW 1 cut(s) 1197
TfiI GAWTC 2 cut(s) 287, 781
Tru1I TTAA 4 cut(s) 318, 639, 957, 1002
Tru9I TTAA 4 cut(s) 318, 639, 957, 1002
TscAI CASTG 1 cut(s) 217
TseI GCWGC 7 cut(s) 53, 90, 93, 464, 671, 822, 931
TspGWI ACGGA 2 cut(s) 861, 875
TspRI CASTG 1 cut(s) 217
Van91I CCANNNNNTGG 1 cut(s) 756
VspI ATTAAT 1 cut(s) 1002
XapI RAATTY 3 cut(s) 1031, 1137, 1149
XmnI GAANNNNTTC 2 cut(s) 867, 900
XspI CTAG 3 cut(s) 722, 773, 786
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.