RLG00000006819

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000354
Physical Location & Seq
Forward (+)
10786291 .. 10787013
723 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006819

Sequence Viewer

Length: 324 bp
ATGCTCTTACACCTCGGTCGCGTACCAACCCTCGTAATCTCATCATCTGAAGCAGCAAAACATGTCTTGAAGGATAATGATCTCCACTGCTGCAGTAGACCCGCCTTCACGGGCACTCGGAGACTCACGTATAATTTATCTAGACATCGCATGCATTTTCGCCTTACGGTGATTGATGATCATCTCAAGCCTGGGAGGACGTCAGAACAAGAGCATGACGACATAGTTGATGTGCTGCTTAAAATAGTGAGGGAGCAAACTGCGTACGGAGCTGCTCAGCTTGGTCATAATAACATCAAAGCTGTCCTCCTGGCAAGCTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

108

Amino Acids

12.04

Weight (kDa)

8.96

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 203
AccI GTMKAC 1 cut(s) 97
AccII CGCG 1 cut(s) 21
AciI CCGC 1 cut(s) 102
AcuI CTGAAG 1 cut(s) 69
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 2 cut(s) 24, 266
AflIII ACRYGT 1 cut(s) 61
AgsI TTSAA 1 cut(s) 70
AjnI CCWGG 2 cut(s) 190, 309
AluBI AGCT 4 cut(s) 272, 280, 302, 318
AluI AGCT 4 cut(s) 272, 280, 302, 318
Alw26I GTCTC 1 cut(s) 115
ApeKI GCWGC 4 cut(s) 53, 90, 235, 272
AsuHPI GGTGA 1 cut(s) 181
BaeGI GKGCMC 1 cut(s) 116
BbvI GCAGC 4 cut(s) 65, 77, 222, 259
BciT130I CCWGG 2 cut(s) 192, 311
BclI TGATCA 1 cut(s) 178
BcoDI GTCTC 1 cut(s) 115
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 91
BisI GCNGC 4 cut(s) 54, 91, 236, 273
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 4 cut(s) 55, 92, 237, 274
Bme1390I CCNGG 2 cut(s) 192, 311
BmrFI CCNGG 2 cut(s) 192, 311
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 170
BsaAI YACGTR 1 cut(s) 129
BsaBI GATNNNNATC 2 cut(s) 78, 180
BsaHI GRCGYC 1 cut(s) 200
BsaJI CCNNGG 2 cut(s) 13, 191
Bse8I GATNNNNATC 2 cut(s) 78, 180
BseBI CCWGG 2 cut(s) 192, 311
BseDI CCNNGG 2 cut(s) 13, 191
BseJI GATNNNNATC 2 cut(s) 78, 180
BseMII CTCAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 4 cut(s) 65, 77, 222, 259
Bsh1236I CGCG 1 cut(s) 21
Bsh1285I CGRYCG 1 cut(s) 19
BsiEI CGRYCG 1 cut(s) 19
BsiWI CGTACG 1 cut(s) 264
BsmAI GTCTC 1 cut(s) 115
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 2 cut(s) 79, 178
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 1 cut(s) 102
BspCNI CTCAG 1 cut(s) 289
BspFNI CGCG 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 95
BssECI CCNNGG 2 cut(s) 13, 191
BssMI GATC 2 cut(s) 79, 178
BssNI GRCGYC 1 cut(s) 200
Bst2UI CCWGG 2 cut(s) 192, 311
Bst4CI ACNGT 1 cut(s) 169
BstACI GRCGYC 1 cut(s) 200
BstBAI YACGTR 1 cut(s) 129
BstC8I GCNNGC 2 cut(s) 152, 316
BstDEI CTNAG 1 cut(s) 276
BstFNI CGCG 1 cut(s) 21
BstKTI GATC 2 cut(s) 82, 181
BstMAI GTCTC 1 cut(s) 115
BstMBI GATC 2 cut(s) 79, 178
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 1 cut(s) 269
BstNI CCWGG 2 cut(s) 192, 311
BstNSI RCATGY 2 cut(s) 65, 154
BstSCI CCNGG 2 cut(s) 190, 309
BstSFI CTRYAG 1 cut(s) 91
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 21
BstV1I GCAGC 4 cut(s) 65, 77, 222, 259
BtgZI GCGATG 1 cut(s) 131
BtsI GCAGTG 1 cut(s) 85
BtsIMutI CAGTG 1 cut(s) 85
Cac8I GCNNGC 2 cut(s) 152, 316
Csp6I GTAC 2 cut(s) 23, 265
CviAII CATG 3 cut(s) 62, 151, 215
CviJI RGCY 5 cut(s) 190, 272, 280, 302, 318
CviKI_1 RGCY 5 cut(s) 190, 272, 280, 302, 318
CviQI GTAC 2 cut(s) 23, 265
DdeI CTNAG 1 cut(s) 276
DpnI GATC 2 cut(s) 81, 180
DpnII GATC 2 cut(s) 79, 178
Eco57I CTGAAG 1 cut(s) 69
EcoRII CCWGG 2 cut(s) 190, 309
EcoT22I ATGCAT 1 cut(s) 156
FaeI CATG 3 cut(s) 65, 154, 218
FaiI YATR 6 cut(s) 63, 132, 152, 216, 224, 288
FatI CATG 3 cut(s) 61, 150, 214
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 178
FblI GTMKAC 1 cut(s) 97
Fnu4HI GCNGC 4 cut(s) 54, 91, 236, 273
Fsp4HI GCNGC 4 cut(s) 54, 91, 236, 273
FspBI CTAG 1 cut(s) 141
GluI GCNGC 4 cut(s) 54, 91, 236, 273
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 3 cut(s) 65, 154, 218
HinfI GANTC 1 cut(s) 123
HphI GGTGA 1 cut(s) 181
Hpy166II GTNNAC 1 cut(s) 98
Hpy188I TCNGA 3 cut(s) 49, 120, 205
Hpy188III TCNNGA 2 cut(s) 67, 141
Hpy8I GTNNAC 1 cut(s) 98
HpyAV CCTTC 2 cut(s) 64, 115
HpyCH4III ACNGT 1 cut(s) 169
HpyCH4IV ACGT 2 cut(s) 128, 200
HpyCH4V TGCA 2 cut(s) 93, 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 269
HpyF3I CTNAG 1 cut(s) 276
HpySE526I ACGT 2 cut(s) 128, 200
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 3 cut(s) 65, 154, 218
Ksp22I TGATCA 1 cut(s) 178
Kzo9I GATC 2 cut(s) 79, 178
LmnI GCTCC 2 cut(s) 253, 269
LpnPI CCDG 3 cut(s) 177, 204, 296
Lsp1109I GCAGC 4 cut(s) 65, 77, 222, 259
MaeI CTAG 1 cut(s) 141
MaeII ACGT 2 cut(s) 128, 200
MalI GATC 2 cut(s) 81, 180
MboI GATC 2 cut(s) 79, 178
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 1 cut(s) 133
MlyI GAGTC 1 cut(s) 117
MnlI CCTC 5 cut(s) 23, 41, 189, 243, 317
Mph1103I ATGCAT 1 cut(s) 156
MseI TTAA 2 cut(s) 240, 322
MspR9I CCNGG 2 cut(s) 192, 311
MvaI CCWGG 2 cut(s) 192, 311
MvnI CGCG 1 cut(s) 21
MwoI GCNNNNNNNGC 1 cut(s) 269
NdeII GATC 2 cut(s) 79, 178
NlaIII CATG 3 cut(s) 65, 154, 218
NsiI ATGCAT 1 cut(s) 156
NspI RCATGY 2 cut(s) 65, 154
PaeI GCATGC 1 cut(s) 154
PciI ACATGT 1 cut(s) 61
Pfl23II CGTACG 1 cut(s) 264
PkrI GCNGC 4 cut(s) 55, 92, 237, 274
PleI GAGTC 1 cut(s) 117
PpsI GAGTC 1 cut(s) 117
Ppu21I YACGTR 1 cut(s) 129
PscI ACATGT 1 cut(s) 61
Psp6I CCWGG 2 cut(s) 190, 309
PspGI CCWGG 2 cut(s) 190, 309
PspLI CGTACG 1 cut(s) 264
PstI CTGCAG 1 cut(s) 95
RsaI GTAC 2 cut(s) 24, 266
RsaNI GTAC 2 cut(s) 23, 265
SaqAI TTAA 2 cut(s) 240, 322
SatI GCNGC 4 cut(s) 54, 91, 236, 273
Sau3AI GATC 2 cut(s) 79, 178
SchI GAGTC 1 cut(s) 117
ScrFI CCNGG 2 cut(s) 192, 311
SduI GDGCHC 1 cut(s) 116
SetI ASST 7 cut(s) 15, 131, 203, 274, 282, 304, 320
SfcI CTRYAG 1 cut(s) 91
SmlI CTYRAG 1 cut(s) 185
SmoI CTYRAG 1 cut(s) 185
SphI GCATGC 1 cut(s) 154
Sse9I AATT 1 cut(s) 133
SsiI CCGC 1 cut(s) 102
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 2 cut(s) 190, 309
TaaI ACNGT 1 cut(s) 169
TaiI ACGT 2 cut(s) 131, 203
TaqII GACCGA 1 cut(s) 5
TasI AATT 1 cut(s) 133
Tru1I TTAA 2 cut(s) 240, 322
Tru9I TTAA 2 cut(s) 240, 322
TscAI CASTG 1 cut(s) 92
TseI GCWGC 4 cut(s) 53, 90, 235, 272
TspGWI ACGGA 1 cut(s) 282
TspRI CASTG 1 cut(s) 92
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 2 cut(s) 65, 154
XmiI GTMKAC 1 cut(s) 97
XspI CTAG 1 cut(s) 141
ZraI GACGTC 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.