Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0000354

Physical Location & Seq

Genomic Coordinates Forward (+)

7268365 .. 7268679

Gene Structure 315 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1104000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGCTCGGAGACATGTCCGCAGCTGACTACTTTCCGTCTTGGATTGGGTGGGTTATCGATAGGTTTTCCGGTGTGCACAAGGAGTTCCATAGGATTTCGAAGGAGTTGGATGATTTTTTCCAGCAGGTGATTGATAATCATCTGAACCCTGGGAGGAGAGTTGACGATGAACAAGCTCATGAAGATATAGTTGACGTTCTGCTTAAGATAGTGAAGGAGCAAAGTGAGTTTGGAGCTTCTCATCTTGGTCACAACAACATCAAGGCAGTCCTCTTGGTAATTAATCTCTCAAAAAACCCCTCTTGCGGATATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

105

Amino Acids

11.86

Weight (kDa)

5.35

Isoelectric Point (pI)

37.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca	FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica	MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica	Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis	pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis	RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata	RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora	Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii	Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa	Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha	Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana	Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	115
Acc36I	ACCTGC	1 cut(s)	115
AciI	CCGC	2 cut(s)	18, 306
AfiI	CCNNNNNNNGG	1 cut(s)	305
AflII	CTTAAG	1 cut(s)	203
AflIII	ACRYGT	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	148
AluBI	AGCT	3 cut(s)	23, 176, 236
AluI	AGCT	3 cut(s)	23, 176, 236
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	1 cut(s)	3
Alw44I	GTGCAC	1 cut(s)	74
ApaLI	GTGCAC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	20
AseI	ATTAAT	1 cut(s)	282
AsuHPI	GGTGA	1 cut(s)	139
AsuII	TTCGAA	1 cut(s)	98
BaeGI	GKGCMC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	32
BciT130I	CCWGG	1 cut(s)	150
BcoDI	GTCTC	1 cut(s)	3
BfrI	CTTAAG	1 cut(s)	203
BfuAI	ACCTGC	1 cut(s)	115
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
Bme1390I	CCNGG	1 cut(s)	150
BmrFI	CCNGG	1 cut(s)	150
Bpu14I	TTCGAA	1 cut(s)	98
Bsa29I	ATCGAT	1 cut(s)	57
BsaBI	GATNNNNATC	1 cut(s)	138
BsaJI	CCNNGG	2 cut(s)	148, 149
BsaWI	WCCGGW	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	305
Bse8I	GATNNNNATC	1 cut(s)	138
BseBI	CCWGG	1 cut(s)	150
BseCI	ATCGAT	1 cut(s)	57
BseDI	CCNNGG	2 cut(s)	148, 149
BseGI	GGATG	1 cut(s)	115
BseJI	GATNNNNATC	1 cut(s)	138
BseLI	CCNNNNNNNGG	1 cut(s)	305
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	78
BseXI	GCAGC	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	78
BsiSI	CCGG	1 cut(s)	69
BslI	CCNNNNNNNGG	1 cut(s)	305
BsmAI	GTCTC	1 cut(s)	3
Bsp119I	TTCGAA	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	78
BspACI	CCGC	2 cut(s)	18, 306
BspDI	ATCGAT	1 cut(s)	57
BspHI	TCATGA	1 cut(s)	178
BspMI	ACCTGC	1 cut(s)	115
BspT104I	TTCGAA	1 cut(s)	98
BspTI	CTTAAG	1 cut(s)	203
BssECI	CCNNGG	2 cut(s)	148, 149
Bst2UI	CCWGG	1 cut(s)	150
BstAFI	CTTAAG	1 cut(s)	203
BstBI	TTCGAA	1 cut(s)	98
BstF5I	GGATG	1 cut(s)	115
BstMAI	GTCTC	1 cut(s)	3
BstNI	CCWGG	1 cut(s)	150
BstNSI	RCATGY	1 cut(s)	16
BstSCI	CCNGG	1 cut(s)	148
BstSLI	GKGCMC	1 cut(s)	78
BstV1I	GCAGC	1 cut(s)	32
Bsu15I	ATCGAT	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	115
BveI	ACCTGC	1 cut(s)	115
CciI	TCATGA	1 cut(s)	178
ClaI	ATCGAT	1 cut(s)	57
CviAII	CATG	2 cut(s)	13, 179
CviJI	RGCY	3 cut(s)	23, 176, 236
CviKI_1	RGCY	3 cut(s)	23, 176, 236
EcoRII	CCWGG	1 cut(s)	148
FaeI	CATG	2 cut(s)	16, 182
FaiI	YATR	4 cut(s)	14, 90, 180, 188
FatI	CATG	2 cut(s)	12, 178
Fnu4HI	GCNGC	1 cut(s)	21
FokI	GGATG	1 cut(s)	122
Fsp4HI	GCNGC	1 cut(s)	21
GluI	GCNGC	1 cut(s)	21
HapII	CCGG	1 cut(s)	69
Hin1II	CATG	2 cut(s)	16, 182
HincII	GTYRAC	2 cut(s)	163, 193
HindII	GTYRAC	2 cut(s)	163, 193
HpaII	CCGG	1 cut(s)	69
HphI	GGTGA	1 cut(s)	139
Hpy166II	GTNNAC	3 cut(s)	76, 163, 193
Hpy188I	TCNGA	2 cut(s)	8, 144
Hpy188III	TCNNGA	1 cut(s)	179
Hpy8I	GTNNAC	3 cut(s)	76, 163, 193
HpyAV	CCTTC	2 cut(s)	94, 208
HpyCH4IV	ACGT	1 cut(s)	195
HpyCH4V	TGCA	1 cut(s)	76
HpySE526I	ACGT	1 cut(s)	195
Hsp92II	CATG	2 cut(s)	16, 182
LmnI	GCTCC	2 cut(s)	217, 233
LpnPI	CCDG	5 cut(s)	82, 110, 134, 135, 162
Lsp1109I	GCAGC	1 cut(s)	32
MaeII	ACGT	1 cut(s)	195
MaeIII	GTNAC	1 cut(s)	248
MboII	GAAGA	1 cut(s)	194
MhlI	GDGCHC	1 cut(s)	78
MluCI	AATT	1 cut(s)	279
MmeI	TCCRAC	1 cut(s)	87
MnlI	CCTC	3 cut(s)	147, 281, 310
MseI	TTAA	3 cut(s)	204, 282, 313
MspA1I	CMGCKG	1 cut(s)	23
MspCI	CTTAAG	1 cut(s)	203
MspI	CCGG	1 cut(s)	69
MspR9I	CCNGG	1 cut(s)	150
MvaI	CCWGG	1 cut(s)	150
NlaIII	CATG	2 cut(s)	16, 182
NmuCI	GTSAC	1 cut(s)	248
NspI	RCATGY	1 cut(s)	16
NspV	TTCGAA	1 cut(s)	98
PagI	TCATGA	1 cut(s)	178
PaqCI	CACCTGC	1 cut(s)	115
PasI	CCCWGGG	1 cut(s)	149
PciI	ACATGT	1 cut(s)	12
PkrI	GCNGC	1 cut(s)	22
PscI	ACATGT	1 cut(s)	12
PshBI	ATTAAT	1 cut(s)	282
Psp6I	CCWGG	1 cut(s)	148
PspGI	CCWGG	1 cut(s)	148
PvuII	CAGCTG	1 cut(s)	23
SaqAI	TTAA	3 cut(s)	204, 282, 313
SatI	GCNGC	1 cut(s)	21
ScrFI	CCNGG	1 cut(s)	150
SduI	GDGCHC	1 cut(s)	78
SetI	ASST	6 cut(s)	25, 65, 129, 178, 198, 238
SfuI	TTCGAA	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	1 cut(s)	279
SsiI	CCGC	2 cut(s)	18, 306
StyD4I	CCNGG	1 cut(s)	148
TaiI	ACGT	1 cut(s)	198
TaqI	TCGA	2 cut(s)	57, 98
TasI	AATT	1 cut(s)	279
Tru1I	TTAA	3 cut(s)	204, 282, 313
Tru9I	TTAA	3 cut(s)	204, 282, 313
TseFI	GTSAC	1 cut(s)	248
TseI	GCWGC	1 cut(s)	20
Tsp45I	GTSAC	1 cut(s)	248
TspDTI	ATGAA	2 cut(s)	183, 195
TspGWI	ACGGA	1 cut(s)	24
Vha464I	CTTAAG	1 cut(s)	203
VneI	GTGCAC	1 cut(s)	74
VspI	ATTAAT	1 cut(s)	282
XceI	RCATGY	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.