Rh4CG233900

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000354
Physical Location & Seq
Reverse (-)
47574164 .. 47575114
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG233900.1

Sequence Viewer

Length: 951 bp
ATGGCTGACAACACCGTCCTACTAATCTTATGGATTCCATTTCTCCTCCTTCTCCCTTTACTACTGCTTTTACTGAGAAAGCAGATCAATAAGCCACAAAAGCACTTTCCACCAAGCCCTCCTAAGCTTCCCATTATAGGCAACCTCCACCAGTTTACTCAATCTGGTTCATCACTTCATCAAAACCTATGGAGACTATCACAGAAATACGGACCACTCATGCTCTTACACATGGGTAGCAGACCGACCCTCATAATCTCATCAGCTGAAGCAGCAAAACAGACCTTGAAAGATAATGATCTCCACTGTTGCAGTAGACCGGCCTCCTCGGGATCTCGCAGACTCACATTTAACCATCTAGACATAGCATTTTCGCCTTACAGTGAATATTGGCGAGAGATAAGAAAGATATGTGTGCTTGAGATTTTCAGTGCGAAAAGGGTTCAGTCGTATAGGTCTATTAGAGAAGAAGAAGTCGTGAAGATGATTGATTCAATCTCTGACGCATCAGCTTCATCTTCTCCTGTTAACCTTACTGAGAAGTTGTTTGCTCTCATGGGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGAGCGATTTGGAGCATGAAAGATTTCTTCGAGTGGTTCATGATCTTACAGGCTTCTCATCAGGCGCAGTTGATTTCTTTCCTCCATGTATCGGGTGGATCATAGACAGGGTCTCCGGTAAACATAGAGAGTTTGACAGACTTTCCAGGGAAGTTCATCGCTTTTTTCAGCAGGCGATTGATGATCATCTCAGGCCTGGGAGGACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGGTCAAGAAGCAAACTGAGATTGGAGCTGTTCAGCTTGGTCATAATAACATCAAGGCAGTTCTCTTGGTAAGCTGCGAACTAATTCAAATCACGGCCTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

316

Amino Acids

35.94

Weight (kDa)

9.1

Isoelectric Point (pI)

49.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 304 1.1e-34 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccI GTMKAC 1 cut(s) 316
AclWI GGATC 2 cut(s) 340, 707
AcuI CTGAAG 1 cut(s) 288
AfiI CCNNNNNNNGG 2 cut(s) 137, 692
AgsI TTSAA 3 cut(s) 289, 495, 935
AjnI CCWGG 2 cut(s) 746, 796
AluBI AGCT 6 cut(s) 127, 266, 512, 875, 883, 921
AluI AGCT 6 cut(s) 127, 266, 512, 875, 883, 921
Alw26I GTCTC 2 cut(s) 187, 718
AlwI GGATC 2 cut(s) 340, 707
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 3 cut(s) 321, 794, 942
ApeKI GCWGC 3 cut(s) 272, 838, 921
Asp700I GAANNNNTTC 2 cut(s) 624, 930
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 212
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 1 cut(s) 212
BbvI GCAGC 3 cut(s) 284, 825, 908
BccI CCATC 1 cut(s) 363
BciT130I CCWGG 2 cut(s) 748, 798
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 2 cut(s) 187, 718
BfaI CTAG 1 cut(s) 359
BisI GCNGC 3 cut(s) 273, 839, 922
BlsI GCNGC 3 cut(s) 274, 840, 923
Bme1390I CCNGG 2 cut(s) 748, 798
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 2 cut(s) 748, 798
BmsI GCATC 1 cut(s) 515
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 1 cut(s) 440
BsaBI GATNNNNATC 2 cut(s) 297, 786
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 4 cut(s) 327, 598, 747, 797
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 692
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 151
Bse8I GATNNNNATC 2 cut(s) 297, 786
BseBI CCWGG 2 cut(s) 748, 798
BseDI CCNNGG 4 cut(s) 327, 598, 747, 797
BseJI GATNNNNATC 2 cut(s) 297, 786
BseLI CCNNNNNNNGG 2 cut(s) 137, 692
BseMII CTCAG 4 cut(s) 65, 528, 805, 855
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 35, 316
BseXI GCAGC 3 cut(s) 284, 825, 908
BshFI GGCC 3 cut(s) 323, 796, 944
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 2 cut(s) 320, 717
BslFI GGGAC 1 cut(s) 601
BslI CCNNNNNNNGG 2 cut(s) 137, 692
BsmAI GTCTC 2 cut(s) 187, 718
BsmFI GGGAC 1 cut(s) 601
BsnI GGCC 3 cut(s) 323, 796, 944
Bso31I GGTCTC 1 cut(s) 718
BsoBI CYCGRG 1 cut(s) 328
Bsp143I GATC 6 cut(s) 84, 298, 332, 643, 699, 784
BspANI GGCC 3 cut(s) 323, 796, 944
BspCNI CTCAG 4 cut(s) 66, 529, 804, 856
BspHI TCATGA 1 cut(s) 640
BspPI GGATC 2 cut(s) 340, 707
BspTNI GGTCTC 1 cut(s) 718
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 4 cut(s) 327, 598, 747, 797
BssMI GATC 6 cut(s) 84, 298, 332, 643, 699, 784
BssT1I CCWWGG 1 cut(s) 598
Bst2UI CCWGG 2 cut(s) 748, 798
Bst4CI ACNGT 3 cut(s) 16, 308, 383
BstC8I GCNNGC 1 cut(s) 774
BstDEI CTNAG 5 cut(s) 74, 123, 537, 791, 864
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 6 cut(s) 87, 301, 335, 646, 702, 787
BstMAI GTCTC 2 cut(s) 187, 718
BstMBI GATC 6 cut(s) 84, 298, 332, 643, 699, 784
BstMWI GCNNNNNNNGC 2 cut(s) 100, 272
BstNI CCWGG 2 cut(s) 748, 798
BstSCI CCNGG 2 cut(s) 746, 796
BstV1I GCAGC 3 cut(s) 284, 825, 908
BstX2I RGATCY 1 cut(s) 332
BstYI RGATCY 1 cut(s) 332
BsuRI GGCC 3 cut(s) 323, 796, 944
BtgZI GCGATG 1 cut(s) 743
BtsIMutI CAGTG 3 cut(s) 304, 388, 436
Cac8I GCNNGC 1 cut(s) 774
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 668
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 212
CseI GACGC 1 cut(s) 512
CviAII CATG 7 cut(s) 220, 232, 556, 617, 641, 687, 818
DdeI CTNAG 5 cut(s) 74, 123, 537, 791, 864
DpnI GATC 6 cut(s) 86, 300, 334, 645, 701, 786
DpnII GATC 6 cut(s) 84, 298, 332, 643, 699, 784
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eco130I CCWWGG 1 cut(s) 598
Eco147I AGGCCT 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 2 cut(s) 746, 796
EcoT14I CCWWGG 1 cut(s) 598
ErhI CCWWGG 1 cut(s) 598
FaeI CATG 7 cut(s) 223, 235, 559, 620, 644, 690, 821
FaqI GGGAC 1 cut(s) 601
FatI CATG 7 cut(s) 219, 231, 555, 616, 640, 686, 817
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 1 cut(s) 316
Fnu4HI GCNGC 3 cut(s) 273, 839, 922
Fsp4HI GCNGC 3 cut(s) 273, 839, 922
FspBI CTAG 1 cut(s) 359
GlaI GCGC 1 cut(s) 667
GluI GCNGC 3 cut(s) 273, 839, 922
HaeIII GGCC 3 cut(s) 323, 796, 944
HapII CCGG 2 cut(s) 320, 717
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 668
Hin1II CATG 7 cut(s) 223, 235, 559, 620, 644, 690, 821
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 1 cut(s) 529
HindII GTYRAC 1 cut(s) 529
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 34, 342, 491
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 2 cut(s) 320, 717
Hpy166II GTNNAC 4 cut(s) 156, 317, 529, 722
Hpy188I TCNGA 1 cut(s) 502
Hpy188III TCNNGA 7 cut(s) 330, 359, 478, 574, 586, 641, 853
Hpy8I GTNNAC 4 cut(s) 156, 317, 529, 722
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 16, 308, 383
HpyCH4V TGCA 1 cut(s) 312
HpyF10VI GCNNNNNNNGC 2 cut(s) 100, 272
HpyF3I CTNAG 5 cut(s) 74, 123, 537, 791, 864
Hsp92II CATG 7 cut(s) 223, 235, 559, 620, 644, 690, 821
HspAI GCGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 784
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 6 cut(s) 84, 298, 332, 643, 699, 784
LmnI GCTCC 4 cut(s) 603, 613, 814, 872
Lsp1109I GCAGC 3 cut(s) 284, 825, 908
LweI GCATC 1 cut(s) 515
MaeI CTAG 1 cut(s) 359
MalI GATC 6 cut(s) 86, 300, 334, 645, 701, 786
MboI GATC 6 cut(s) 84, 298, 332, 643, 699, 784
MboII GAAGA 6 cut(s) 479, 482, 493, 510, 620, 833
MflI RGATCY 1 cut(s) 332
MluCI AATT 2 cut(s) 567, 930
MlyI GAGTC 1 cut(s) 336
MnlI CCTC 8 cut(s) 56, 129, 155, 260, 334, 337, 693, 795
MroXI GAANNNNTTC 2 cut(s) 624, 930
MseI TTAA 4 cut(s) 351, 528, 843, 949
MspA1I CMGCKG 1 cut(s) 266
MspI CCGG 2 cut(s) 320, 717
MspR9I CCNGG 2 cut(s) 748, 798
MvaI CCWGG 2 cut(s) 748, 798
MwoI GCNNNNNNNGC 2 cut(s) 100, 272
NdeII GATC 6 cut(s) 84, 298, 332, 643, 699, 784
NlaIII CATG 7 cut(s) 223, 235, 559, 620, 644, 690, 821
PagI TCATGA 1 cut(s) 640
PceI AGGCCT 1 cut(s) 796
PdmI GAANNNNTTC 2 cut(s) 624, 930
PfeI GAWTC 2 cut(s) 34, 491
PflFI GACNNNGTC 1 cut(s) 710
PkrI GCNGC 3 cut(s) 274, 840, 923
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp6I CCWGG 2 cut(s) 746, 796
PspGI CCWGG 2 cut(s) 746, 796
PspPI GGNCC 1 cut(s) 212
PsuI RGATCY 1 cut(s) 332
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 1 cut(s) 266
SaqAI TTAA 4 cut(s) 351, 528, 843, 949
SatI GCNGC 3 cut(s) 273, 839, 922
Sau3AI GATC 6 cut(s) 84, 298, 332, 643, 699, 784
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 2 cut(s) 748, 798
SfaNI GCATC 1 cut(s) 515
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 1 cut(s) 419
SmoI CTYRAG 1 cut(s) 419
Sse9I AATT 2 cut(s) 567, 930
SseBI AGGCCT 1 cut(s) 796
SspI AATATT 1 cut(s) 389
SspMI CTAG 1 cut(s) 359
StuI AGGCCT 1 cut(s) 796
StyD4I CCNGG 2 cut(s) 746, 796
StyI CCWWGG 1 cut(s) 598
TaaI ACNGT 3 cut(s) 16, 308, 383
TaqI TCGA 1 cut(s) 631
TaqII GACCGA 1 cut(s) 259
TasI AATT 2 cut(s) 567, 930
TfiI GAWTC 2 cut(s) 34, 491
Tru1I TTAA 4 cut(s) 351, 528, 843, 949
Tru9I TTAA 4 cut(s) 351, 528, 843, 949
TscAI CASTG 3 cut(s) 311, 388, 436
TseI GCWGC 3 cut(s) 272, 838, 921
TspDTI ATGAA 7 cut(s) 159, 167, 504, 629, 633, 746, 834
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 3 cut(s) 311, 388, 436
Tth111I GACNNNGTC 1 cut(s) 710
VpaK11BI GGWCC 1 cut(s) 212
XbaI TCTAGA 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 693
XmiI GTMKAC 1 cut(s) 316
XmnI GAANNNNTTC 2 cut(s) 624, 930
XspI CTAG 1 cut(s) 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.