Rh4BG222100

Cytochrome p450

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Reverse (-)
38304413 .. 38312541
8129 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG222100.1

Sequence Viewer

Length: 1284 bp
ATGGTAGGGTATGGGACTAAAGAATTAGATCTTAAGGGAAAAATTGTAGTCCCTGGATTTATTGATTCCCATGTGCATCTGATCTTTGGTGGACTGCAGATGATGCGTGTAGAACTACATGGCATAAACTCAAAAGATGAATTTGTGAAGAGGATCAAAGAAGCTGTGAGAAGGGTCTTTACTGATCTAGCTTATTCAGCAGATGCAAGTACAAGGTGTGCCGGTATGGAGATCAATAAGCCACAAAAGCACTTCCCACCAAGCCCTCCTAAGCTTCCCATTATAGGCAACCTCCACCAGTTTACTCAATCTGGTTCATCACTTCATCAAAACCTATGGAGACTATCAGAGAAATACGGACCACTCATGCTCTTACAGCTGGGTCGCAGACCGACCCTCATAATCTCATCAGCTGAAGCAGCAAAGCAGACCTTGACAGATAATGATCTCCACTGTTGCAGTAGACCGGACATCTGGGGAGCTCGCAGACTCACATTTAACTATCTAGACATAGCATTTTCGCCCTACGGTGAATATTGGCGAGAGATAAGAAAGATATGTGTGCTTGAGATTTTCAGTGCGAAAAGGGTTCAGTCGTATAGGTCTATTAGGGAAGAAGAAGTCGTGAAGATGATTGATTCAATCTCTGACGCATCAGCTTCATCTTCTCCTGTTGACCTTACTGAGAAGTTGTTTGCTCTCATGGGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGCACGATTTGGAGCATGAAAGATTTCTTCAACTGCTTCATGATAGTCAAAATATGATTTTAGGTTTCTCAGCAGCTGATTTCTTTCCTCCAGGTATCGGCTGGATCATAGACAGGATCTCCGGTAAACACAGAGAGTTTGATAGAGTTTCCAGGGAAGTTCATGGCTTTTTTCAGCAGGCGATTGATGATCATCTCAGGCCTGGGAGGACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGGTCAAGGAACAAACTGGGATTGGAGCTGCTCAGCTTGGTCATAATAACATCAAGGCAGTTCTCTTGGATTTGTTTCTAGGAGGAGTAGAGAACAGTGCAACTACCATTATTTGGGCAATGGCAGAGCTAGCTACGAATACAAGAGTGATCAAGAAAGCACAGGAAGAAATTAGAAAATGCATTGGAAATAAAAGAAAAGCCACTGAAATTGATATAGAGCAGCTGCAGTACCTCAAGATGATAGTGAAAGAAACACTTCGACTACATCCACCAGGGCCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

427

Amino Acids

48.38

Weight (kDa)

8.46

Isoelectric Point (pI)

42.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Amidohydro_3 PF07969 8 - 58 5.1e-10 Amidohydrolase family
p450 PF00067 86 - 427 3.2e-61 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1113
AccI GTMKAC 1 cut(s) 463
AclWI GGATC 3 cut(s) 161, 860, 872
AcsI RAATTY 1 cut(s) 140
AcuI CTGAAG 1 cut(s) 435
AfaI GTAC 2 cut(s) 211, 1232
AfiI CCNNNNNNNGG 3 cut(s) 284, 845, 1113
AflII CTTAAG 1 cut(s) 32
AgsI TTSAA 2 cut(s) 642, 779
AjnI CCWGG 5 cut(s) 52, 838, 899, 949, 1273
Alw21I GWGCWC 1 cut(s) 484
Alw26I GTCTC 1 cut(s) 334
AlwI GGATC 3 cut(s) 161, 860, 872
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 2 cut(s) 947, 1277
ApaI GGGCCC 1 cut(s) 1281
ApeKI GCWGC 6 cut(s) 419, 821, 991, 1028, 1222, 1225
ApoI RAATTY 1 cut(s) 140
Asp700I GAANNNNTTC 2 cut(s) 771, 1257
AspS9I GGNCC 3 cut(s) 359, 1277, 1278
AsuHPI GGTGA 1 cut(s) 542
AsuNHI GCTAGC 1 cut(s) 1129
AvaII GGWCC 1 cut(s) 359
BaeGI GKGCMC 2 cut(s) 753, 1281
BanII GRGCYC 2 cut(s) 484, 1281
BarI GAAGNNNNNNTAC 2 cut(s) 163, 195
Bbv12I GWGCWC 1 cut(s) 484
BbvI GCAGC 6 cut(s) 431, 833, 978, 1015, 1212, 1234
BciT130I CCWGG 5 cut(s) 54, 840, 901, 951, 1275
BclI TGATCA 2 cut(s) 937, 1149
BcoDI GTCTC 1 cut(s) 334
BfaI CTAG 5 cut(s) 188, 506, 1079, 1130, 1282
BfmI CTRYAG 2 cut(s) 95, 1226
BfrI CTTAAG 1 cut(s) 32
BglII AGATCT 1 cut(s) 28
BisI GCNGC 6 cut(s) 420, 822, 992, 1029, 1223, 1226
BlpI GCTNAGC 1 cut(s) 1032
BlsI GCNGC 6 cut(s) 421, 823, 993, 1030, 1224, 1227
Bme1390I CCNGG 5 cut(s) 54, 840, 901, 951, 1275
Bme18I GGWCC 1 cut(s) 359
BmgT120I GGNCC 3 cut(s) 359, 1277, 1278
BmiI GGNNCC 1 cut(s) 1279
BmrFI CCNGG 5 cut(s) 54, 840, 901, 951, 1275
BmrI ACTGGG 1 cut(s) 1026
BmsI GCATC 4 cut(s) 85, 93, 193, 662
BmtI GCTAGC 1 cut(s) 1133
BmuI ACTGGG 1 cut(s) 1026
BpmI CTGGAG 1 cut(s) 822
Bpu10I CCTNAGC 1 cut(s) 270
Bpu1102I GCTNAGC 1 cut(s) 1032
BpuEI CTTGAG 2 cut(s) 587, 1220
BsaBI GATNNNNATC 2 cut(s) 444, 939
BsaJI CCNNGG 5 cut(s) 52, 745, 900, 950, 1274
BsaWI WCCGGW 2 cut(s) 466, 869
BsaXI ACNNNNNCTCC 2 cut(s) 851, 881
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 845, 1113
Bse118I RCCGGY 1 cut(s) 221
Bse1I ACTGG 2 cut(s) 298, 1021
Bse3DI GCAATG 1 cut(s) 1125
Bse8I GATNNNNATC 2 cut(s) 444, 939
BseBI CCWGG 5 cut(s) 54, 840, 901, 951, 1275
BseDI CCNNGG 5 cut(s) 52, 745, 900, 950, 1274
BseGI GGATG 1 cut(s) 1267
BseJI GATNNNNATC 2 cut(s) 444, 939
BseLI CCNNNNNNNGG 3 cut(s) 284, 845, 1113
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 4 cut(s) 675, 831, 958, 1046
BseNI ACTGG 2 cut(s) 298, 1021
BseRI GAGGAG 1 cut(s) 1098
BseSI GKGCMC 2 cut(s) 753, 1281
BseXI GCAGC 6 cut(s) 431, 833, 978, 1015, 1212, 1234
BseYI CCCAGC 1 cut(s) 379
BshFI GGCC 2 cut(s) 949, 1279
BsiHKAI GWGCWC 1 cut(s) 484
BsiSI CCGG 3 cut(s) 222, 467, 870
BslFI GGGAC 3 cut(s) 28, 35, 748
BslI CCNNNNNNNGG 3 cut(s) 284, 845, 1113
BsmAI GTCTC 1 cut(s) 334
BsmFI GGGAC 3 cut(s) 28, 35, 748
BsnI GGCC 2 cut(s) 949, 1279
Bsp120I GGGCCC 1 cut(s) 1277
Bsp1286I GDGCHC 3 cut(s) 484, 753, 1281
Bsp1720I GCTNAGC 1 cut(s) 1032
BspANI GGCC 2 cut(s) 949, 1279
BspCNI CTCAG 4 cut(s) 676, 830, 957, 1045
BspHI TCATGA 1 cut(s) 787
BspLI GGNNCC 1 cut(s) 1279
BspMAI CTGCAG 2 cut(s) 99, 1230
BspOI GCTAGC 1 cut(s) 1133
BspPI GGATC 3 cut(s) 161, 860, 872
BspTI CTTAAG 1 cut(s) 32
BsrDI GCAATG 1 cut(s) 1125
BsrFI RCCGGY 1 cut(s) 221
BsrI ACTGG 2 cut(s) 298, 1021
BssAI RCCGGY 1 cut(s) 221
BssECI CCNNGG 5 cut(s) 52, 745, 900, 950, 1274
BssT1I CCWWGG 1 cut(s) 745
Bst2UI CCWGG 5 cut(s) 54, 840, 901, 951, 1275
Bst4CI ACNGT 3 cut(s) 455, 530, 1097
Bst6I CTCTTC 1 cut(s) 143
BstAFI CTTAAG 1 cut(s) 32
BstAPI GCANNNNNTGC 1 cut(s) 103
BstC8I GCNNGC 3 cut(s) 484, 927, 1131
BstDEI CTNAG 5 cut(s) 270, 684, 817, 944, 1032
BstF5I GGATG 1 cut(s) 1267
BstMAI GTCTC 1 cut(s) 334
BstMWI GCNNNNNNNGC 6 cut(s) 103, 197, 247, 376, 419, 1130
BstNI CCWGG 5 cut(s) 54, 840, 901, 951, 1275
BstSCI CCNGG 5 cut(s) 52, 838, 899, 949, 1273
BstSFI CTRYAG 2 cut(s) 95, 1226
BstSLI GKGCMC 2 cut(s) 753, 1281
BstV1I GCAGC 6 cut(s) 431, 833, 978, 1015, 1212, 1234
BstX2I RGATCY 2 cut(s) 28, 864
BstYI RGATCY 2 cut(s) 28, 864
BsuRI GGCC 2 cut(s) 949, 1279
BtsCI GGATG 1 cut(s) 1267
BtsIMutI CAGTG 4 cut(s) 451, 583, 1102, 1203
Cac8I GCNNGC 3 cut(s) 484, 927, 1131
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 1 cut(s) 787
Cfr10I RCCGGY 1 cut(s) 221
Cfr13I GGNCC 3 cut(s) 359, 1277, 1278
CseI GACGC 1 cut(s) 659
Csp6I GTAC 2 cut(s) 210, 1231
CspCI CAANNNNNGTGG 2 cut(s) 1192, 1227
CviAII CATG 8 cut(s) 71, 119, 367, 703, 764, 788, 911, 971
CviQI GTAC 2 cut(s) 210, 1231
DdeI CTNAG 5 cut(s) 270, 684, 817, 944, 1032
Eam1104I CTCTTC 1 cut(s) 143
EarI CTCTTC 1 cut(s) 143
Ecl136II GAGCTC 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 745
Eco147I AGGCCT 1 cut(s) 949
Eco24I GRGCYC 2 cut(s) 484, 1281
Eco47I GGWCC 1 cut(s) 359
Eco53kI GAGCTC 1 cut(s) 482
Eco57I CTGAAG 1 cut(s) 435
EcoICRI GAGCTC 1 cut(s) 482
EcoO109I RGGNCCY 2 cut(s) 1277, 1278
EcoRII CCWGG 5 cut(s) 52, 838, 899, 949, 1273
EcoT14I CCWWGG 1 cut(s) 745
EcoT22I ATGCAT 1 cut(s) 1184
EcoT38I GRGCYC 2 cut(s) 484, 1281
ErhI CCWWGG 1 cut(s) 745
FaeI CATG 8 cut(s) 74, 122, 370, 706, 767, 791, 914, 974
FalI AAGNNNNNCTT 4 cut(s) 416, 448, 1242, 1274
FaqI GGGAC 3 cut(s) 28, 35, 748
FatI CATG 8 cut(s) 70, 118, 366, 702, 763, 787, 910, 970
FbaI TGATCA 2 cut(s) 937, 1149
FblI GTMKAC 1 cut(s) 463
Fnu4HI GCNGC 6 cut(s) 420, 822, 992, 1029, 1223, 1226
FokI GGATG 1 cut(s) 1254
FriOI GRGCYC 2 cut(s) 484, 1281
Fsp4HI GCNGC 6 cut(s) 420, 822, 992, 1029, 1223, 1226
FspBI CTAG 5 cut(s) 188, 506, 1079, 1130, 1282
GluI GCNGC 6 cut(s) 420, 822, 992, 1029, 1223, 1226
GsaI CCCAGC 1 cut(s) 383
GsuI CTGGAG 1 cut(s) 822
HaeIII GGCC 2 cut(s) 949, 1279
HapII CCGG 3 cut(s) 222, 467, 870
HgaI GACGC 1 cut(s) 659
Hin1II CATG 8 cut(s) 74, 122, 370, 706, 767, 791, 914, 974
HincII GTYRAC 1 cut(s) 676
HindII GTYRAC 1 cut(s) 676
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 3 cut(s) 65, 489, 638
HpaII CCGG 3 cut(s) 222, 467, 870
HphI GGTGA 1 cut(s) 542
Hpy166II GTNNAC 5 cut(s) 92, 303, 464, 676, 875
Hpy188I TCNGA 3 cut(s) 81, 349, 649
Hpy188III TCNNGA 7 cut(s) 506, 625, 721, 733, 788, 1153, 1237
Hpy8I GTNNAC 5 cut(s) 92, 303, 464, 676, 875
HpyAV CCTTC 1 cut(s) 165
HpyCH4III ACNGT 3 cut(s) 455, 530, 1097
HpyCH4V TGCA 7 cut(s) 76, 97, 206, 459, 1100, 1182, 1228
HpyF10VI GCNNNNNNNGC 6 cut(s) 103, 197, 247, 376, 419, 1130
HpyF3I CTNAG 5 cut(s) 270, 684, 817, 944, 1032
Hsp92II CATG 8 cut(s) 74, 122, 370, 706, 767, 791, 914, 974
Ksp22I TGATCA 2 cut(s) 937, 1149
LmnI GCTCC 4 cut(s) 479, 760, 967, 1025
Lsp1109I GCAGC 6 cut(s) 431, 833, 978, 1015, 1212, 1234
LweI GCATC 4 cut(s) 85, 93, 193, 662
MaeI CTAG 5 cut(s) 188, 506, 1079, 1130, 1282
MboII GAAGA 8 cut(s) 160, 626, 629, 640, 657, 767, 986, 1178
MflI RGATCY 2 cut(s) 28, 864
MhlI GDGCHC 3 cut(s) 484, 753, 1281
MluCI AATT 6 cut(s) 23, 42, 140, 714, 1170, 1209
MlyI GAGTC 1 cut(s) 483
MnlI CCTC 8 cut(s) 144, 276, 302, 407, 846, 948, 1076, 1244
Mph1103I ATGCAT 1 cut(s) 1184
MroXI GAANNNNTTC 2 cut(s) 771, 1257
MseI TTAA 3 cut(s) 33, 498, 996
MspA1I CMGCKG 4 cut(s) 379, 413, 824, 1225
MspCI CTTAAG 1 cut(s) 32
MspI CCGG 3 cut(s) 222, 467, 870
MspR9I CCNGG 5 cut(s) 54, 840, 901, 951, 1275
MvaI CCWGG 5 cut(s) 54, 840, 901, 951, 1275
MwoI GCNNNNNNNGC 6 cut(s) 103, 197, 247, 376, 419, 1130
NheI GCTAGC 1 cut(s) 1129
NlaIII CATG 8 cut(s) 74, 122, 370, 706, 767, 791, 914, 974
NlaIV GGNNCC 1 cut(s) 1279
NsiI ATGCAT 1 cut(s) 1184
PagI TCATGA 1 cut(s) 787
PceI AGGCCT 1 cut(s) 949
PdmI GAANNNNTTC 2 cut(s) 771, 1257
PfeI GAWTC 2 cut(s) 65, 638
PflMI CCANNNNNTGG 1 cut(s) 1113
PkrI GCNGC 6 cut(s) 421, 823, 993, 1030, 1224, 1227
PleI GAGTC 1 cut(s) 483
PpsI GAGTC 1 cut(s) 483
Psp124BI GAGCTC 1 cut(s) 484
Psp6I CCWGG 5 cut(s) 52, 838, 899, 949, 1273
PspFI CCCAGC 1 cut(s) 379
PspGI CCWGG 5 cut(s) 52, 838, 899, 949, 1273
PspN4I GGNNCC 1 cut(s) 1279
PspOMI GGGCCC 1 cut(s) 1277
PspPI GGNCC 3 cut(s) 359, 1277, 1278
PstI CTGCAG 2 cut(s) 99, 1230
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 2 cut(s) 28, 864
PvuII CAGCTG 4 cut(s) 379, 413, 824, 1225
RsaI GTAC 2 cut(s) 211, 1232
RsaNI GTAC 2 cut(s) 210, 1231
SacI GAGCTC 1 cut(s) 484
SaqAI TTAA 3 cut(s) 33, 498, 996
SatI GCNGC 6 cut(s) 420, 822, 992, 1029, 1223, 1226
Sau96I GGNCC 3 cut(s) 359, 1277, 1278
SchI GAGTC 1 cut(s) 483
ScrFI CCNGG 5 cut(s) 54, 840, 901, 951, 1275
SduI GDGCHC 3 cut(s) 484, 753, 1281
SfaNI GCATC 4 cut(s) 85, 93, 193, 662
SfcI CTRYAG 2 cut(s) 95, 1226
SinI GGWCC 1 cut(s) 359
SmlI CTYRAG 3 cut(s) 32, 566, 1235
SmoI CTYRAG 3 cut(s) 32, 566, 1235
Sse9I AATT 6 cut(s) 23, 42, 140, 714, 1170, 1209
SseBI AGGCCT 1 cut(s) 949
SspI AATATT 1 cut(s) 536
SspMI CTAG 5 cut(s) 188, 506, 1079, 1130, 1282
SstI GAGCTC 1 cut(s) 484
StuI AGGCCT 1 cut(s) 949
StyD4I CCNGG 5 cut(s) 52, 838, 899, 949, 1273
StyI CCWWGG 1 cut(s) 745
TaaI ACNGT 3 cut(s) 455, 530, 1097
TaqI TCGA 1 cut(s) 1261
TaqII GACCGA 1 cut(s) 406
TasI AATT 6 cut(s) 23, 42, 140, 714, 1170, 1209
TatI WGTACW 1 cut(s) 209
TfiI GAWTC 2 cut(s) 65, 638
Tru1I TTAA 3 cut(s) 33, 498, 996
Tru9I TTAA 3 cut(s) 33, 498, 996
TscAI CASTG 4 cut(s) 458, 583, 1102, 1210
TseI GCWGC 6 cut(s) 419, 821, 991, 1028, 1222, 1225
TspDTI ATGAA 8 cut(s) 153, 306, 314, 651, 776, 780, 899, 987
TspGWI ACGGA 1 cut(s) 372
TspRI CASTG 4 cut(s) 458, 583, 1102, 1210
Van91I CCANNNNNTGG 1 cut(s) 1113
Vha464I CTTAAG 1 cut(s) 32
VpaK11BI GGWCC 1 cut(s) 359
XapI RAATTY 1 cut(s) 140
XbaI TCTAGA 1 cut(s) 505
XcmI CCANNNNNNNNNTGG 1 cut(s) 846
XmiI GTMKAC 1 cut(s) 463
XmnI GAANNNNTTC 2 cut(s) 771, 1257
XspI CTAG 5 cut(s) 188, 506, 1079, 1130, 1282
Zsp2I ATGCAT 1 cut(s) 1184
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.