RchiOBHm_Chr4g0419461

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000354
Physical Location & Seq
Reverse (-)
44855144 .. 44855536
393 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38936

Sequence Viewer

Length: 393 bp
ATGGAAATAAAAGAAAAGCCATTGAAATTAACAGCTGCAGTCCTCAAGATAATCGTGAAAGAAACACTTCGACTACATCCACCAGGGCCCTTACTTGTTGCACGAGAAACCATGTCCCACTTCAAAGTCCTCAGGTATGATGTTGACCCAAAAACAACAATCCTTGTTAATGATTGGCCAATCTCACGAGATCCAGAATTTTGGAACGACCCAGAAAAGTTCATTCCGGAAAGATTTGATGATAGGTCTATTGATTTTATAAGGCAACACTTTGACTTCTTGCCATTTGGAGCTAGTCGAAGAATCTGTCCAGGGATTTATATGGCAGCGACGACAATGGAGCTTGCACTTGCCAGTTGTGCTGCTTTGATTGGAAAGTGCCTGATGGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

130

Amino Acids

14.96

Weight (kDa)

6.83

Isoelectric Point (pI)

40.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 14 - 119 1.2e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccIII TCCGGA 1 cut(s) 226
AclWI GGATC 1 cut(s) 185
AcoI YGGCCR 1 cut(s) 176
AcsI RAATTY 1 cut(s) 197
AgsI TTSAA 2 cut(s) 25, 124
AjnI CCWGG 2 cut(s) 82, 310
AluBI AGCT 3 cut(s) 35, 293, 343
AluI AGCT 3 cut(s) 35, 293, 343
AlwI GGATC 1 cut(s) 185
Aor13HI TCCGGA 1 cut(s) 226
AoxI GGCC 2 cut(s) 86, 176
ApaI GGGCCC 1 cut(s) 90
ApeKI GCWGC 3 cut(s) 35, 326, 362
ApoI RAATTY 1 cut(s) 197
ArsI GACNNNNNNTTYG 2 cut(s) 292, 324
Asp700I GAANNNNTTC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 86, 87
AxyI CCTNAGG 1 cut(s) 131
BaeGI GKGCMC 1 cut(s) 90
BalI TGGCCA 1 cut(s) 178
BanII GRGCYC 1 cut(s) 90
BauI CACGAG 2 cut(s) 102, 186
BbvI GCAGC 3 cut(s) 22, 338, 349
BccI CCATC 1 cut(s) 379
BciT130I CCWGG 2 cut(s) 84, 312
BfaI CTAG 1 cut(s) 294
BfmI CTRYAG 1 cut(s) 36
BisI GCNGC 3 cut(s) 36, 327, 363
BlsI GCNGC 3 cut(s) 37, 328, 364
Bme1390I CCNGG 2 cut(s) 84, 312
BmgT120I GGNCC 2 cut(s) 86, 87
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 2 cut(s) 84, 312
BpuEI CTTGAG 1 cut(s) 29
BsaJI CCNNGG 2 cut(s) 83, 311
BsaWI WCCGGW 1 cut(s) 226
Bse1I ACTGG 1 cut(s) 354
Bse21I CCTNAGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 226
BseBI CCWGG 2 cut(s) 84, 312
BseDI CCNNGG 2 cut(s) 83, 311
BseGI GGATG 1 cut(s) 76
BseMII CTCAG 1 cut(s) 145
BseNI ACTGG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 90
BseXI GCAGC 3 cut(s) 22, 338, 349
BshFI GGCC 2 cut(s) 88, 178
BsiSI CCGG 1 cut(s) 227
BslFI GGGAC 1 cut(s) 100
BsmFI GGGAC 1 cut(s) 100
BsnI GGCC 2 cut(s) 88, 178
Bsp120I GGGCCC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 90
Bsp13I TCCGGA 1 cut(s) 226
Bsp143I GATC 1 cut(s) 190
BspANI GGCC 2 cut(s) 88, 178
BspCNI CTCAG 1 cut(s) 144
BspEI TCCGGA 1 cut(s) 226
BspLI GGNNCC 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 40
BspPI GGATC 1 cut(s) 185
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 2 cut(s) 83, 311
BssMI GATC 1 cut(s) 190
BssSI CACGAG 2 cut(s) 102, 186
Bst2BI CACGAG 2 cut(s) 102, 186
Bst2UI CCWGG 2 cut(s) 84, 312
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 1 cut(s) 131
BstF5I GGATG 1 cut(s) 76
BstKTI GATC 1 cut(s) 193
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 2 cut(s) 84, 312
BstSCI CCNGG 2 cut(s) 82, 310
BstSFI CTRYAG 1 cut(s) 36
BstSLI GKGCMC 1 cut(s) 90
BstV1I GCAGC 3 cut(s) 22, 338, 349
BstX2I RGATCY 1 cut(s) 190
BstXI CCANNNNNNTGG 1 cut(s) 201
BstYI RGATCY 1 cut(s) 190
Bsu36I CCTNAGG 1 cut(s) 131
BsuRI GGCC 2 cut(s) 88, 178
BtsCI GGATG 1 cut(s) 76
Cac8I GCNNGC 1 cut(s) 345
Cfr13I GGNCC 2 cut(s) 86, 87
CviAII CATG 1 cut(s) 112
CviJI RGCY 6 cut(s) 19, 35, 88, 178, 293, 343
CviKI_1 RGCY 6 cut(s) 19, 35, 88, 178, 293, 343
DdeI CTNAG 1 cut(s) 131
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EaeI YGGCCR 1 cut(s) 176
Eco24I GRGCYC 1 cut(s) 90
Eco81I CCTNAGG 1 cut(s) 131
EcoO109I RGGNCCY 2 cut(s) 86, 87
EcoRII CCWGG 2 cut(s) 82, 310
EcoT38I GRGCYC 1 cut(s) 90
FaeI CATG 1 cut(s) 115
FaiI YATR 5 cut(s) 113, 138, 260, 321, 323
FalI AAGNNNNNCTT 2 cut(s) 51, 83
FaqI GGGAC 1 cut(s) 100
FatI CATG 1 cut(s) 111
Fnu4HI GCNGC 3 cut(s) 36, 327, 363
FokI GGATG 1 cut(s) 63
FriOI GRGCYC 1 cut(s) 90
Fsp4HI GCNGC 3 cut(s) 36, 327, 363
FspBI CTAG 1 cut(s) 294
GluI GCNGC 3 cut(s) 36, 327, 363
HaeIII GGCC 2 cut(s) 88, 178
HapII CCGG 1 cut(s) 227
Hin1II CATG 1 cut(s) 115
HincII GTYRAC 1 cut(s) 145
HindII GTYRAC 1 cut(s) 145
HinfI GANTC 1 cut(s) 303
HpaII CCGG 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 145
Hpy188III TCNNGA 5 cut(s) 46, 55, 186, 194, 227
Hpy8I GTNNAC 1 cut(s) 145
Hpy99I CGWCG 1 cut(s) 334
HpyCH4V TGCA 3 cut(s) 38, 101, 347
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 131
Hsp92II CATG 1 cut(s) 115
Kpn2I TCCGGA 1 cut(s) 226
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 2 cut(s) 290, 340
LpnPI CCDG 9 cut(s) 69, 96, 118, 207, 225, 240, 297, 324, 367
Lsp1109I GCAGC 3 cut(s) 22, 338, 349
MaeI CTAG 1 cut(s) 294
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 312
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 1 cut(s) 90
MlsI TGGCCA 1 cut(s) 178
MluCI AATT 2 cut(s) 26, 197
MluNI TGGCCA 1 cut(s) 178
MnlI CCTC 2 cut(s) 53, 140
Mox20I TGGCCA 1 cut(s) 178
MroI TCCGGA 1 cut(s) 226
MroXI GAANNNNTTC 1 cut(s) 66
MscI TGGCCA 1 cut(s) 178
MseI TTAA 2 cut(s) 29, 168
Msp20I TGGCCA 1 cut(s) 178
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 1 cut(s) 227
MspR9I CCNGG 2 cut(s) 84, 312
MvaI CCWGG 2 cut(s) 84, 312
MwoI GCNNNNNNNGC 1 cut(s) 359
NdeII GATC 1 cut(s) 190
NlaIII CATG 1 cut(s) 115
NlaIV GGNNCC 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 66
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 3 cut(s) 37, 328, 364
PsiI TTATAA 1 cut(s) 260
Psp6I CCWGG 2 cut(s) 82, 310
PspGI CCWGG 2 cut(s) 82, 310
PspN4I GGNNCC 1 cut(s) 88
PspOMI GGGCCC 1 cut(s) 86
PspPI GGNCC 2 cut(s) 86, 87
PstI CTGCAG 1 cut(s) 40
PsuI RGATCY 1 cut(s) 190
PvuII CAGCTG 1 cut(s) 35
SaqAI TTAA 2 cut(s) 29, 168
SatI GCNGC 3 cut(s) 36, 327, 363
Sau3AI GATC 1 cut(s) 190
Sau96I GGNCC 2 cut(s) 86, 87
ScrFI CCNGG 2 cut(s) 84, 312
SduI GDGCHC 1 cut(s) 90
SetI ASST 5 cut(s) 37, 137, 248, 295, 345
SfcI CTRYAG 1 cut(s) 36
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
Sse9I AATT 2 cut(s) 26, 197
SspMI CTAG 1 cut(s) 294
StyD4I CCNGG 2 cut(s) 82, 310
TaqI TCGA 2 cut(s) 70, 298
TasI AATT 2 cut(s) 26, 197
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 2 cut(s) 29, 168
Tru9I TTAA 2 cut(s) 29, 168
TseI GCWGC 3 cut(s) 35, 326, 362
TspDTI ATGAA 1 cut(s) 211
XapI RAATTY 1 cut(s) 197
XmnI GAANNNNTTC 1 cut(s) 66
XspI CTAG 1 cut(s) 294
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.