Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000354

Physical Location & Seq

Genomic Coordinates Forward (+)

14156346 .. 14157568

Gene Structure 1223 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G170800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGCATTGGAAACACAAAGGAAAAATCAGTGAACAAGATACAGATGAGCTTCAATACGTCAAGATGATAATCAAAGAGACTCGATTGCATACTCTAGCTCCAATGATTATTCCAAGAGAAACCATGTCTCATTTCAAAATCCAAGATTCTGATATTGACCCCAAAACACTTGTCTTTTCTTGGAAGGACTCAGAAAAATTTATCCCAGAAAGGTTTGATGGCAGCTCCATTGATTATAAAGGACAGAATTTTGAGTTTTTACTATTTGGAGCTGGTCGAAGAATTTGTCCTGGGATGTACATGGGAATAACAACACTACAGCCTGGACTTGCAAATCTTCTCTACTGGTTTGATTGGAAATTGCTTAATGGGATGAAGGAGGAAGATATCGATATGGAAGAAAATAAGGTGATAAGAGCAAAAGAGAAAGTTGTTCATAAACCAAACTACATCAAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

ko00140 ko01100 ko04913 ko04917 ko04927 ko04934 map00140 map01100 map04913 map04917 map04927 map04934

Pfam Domains

Protein Families

p450

Protein Analysis

154

Amino Acids

18.1

Weight (kDa)

6.53

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca	FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica	MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica	Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis	pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis	RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata	RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora	Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii	Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa	Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha	Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana	Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	237
AcsI	RAATTY	3 cut(s)	197, 247, 282
AfaI	GTAC	1 cut(s)	299
AgsI	TTSAA	2 cut(s)	53, 136
AjnI	CCWGG	2 cut(s)	289, 322
AluBI	AGCT	4 cut(s)	49, 98, 225, 272
AluI	AGCT	4 cut(s)	49, 98, 225, 272
Alw26I	GTCTC	2 cut(s)	71, 132
ApeKI	GCWGC	1 cut(s)	222
ApoI	RAATTY	3 cut(s)	197, 247, 282
ArsI	GACNNNNNNTTYG	4 cut(s)	156, 188, 271, 303
AsuHPI	GGTGA	1 cut(s)	421
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	212
BciT130I	CCWGG	2 cut(s)	291, 324
BcoDI	GTCTC	2 cut(s)	71, 132
BfaI	CTAG	1 cut(s)	95
BfmI	CTRYAG	1 cut(s)	317
BisI	GCNGC	1 cut(s)	223
BlsI	GCNGC	1 cut(s)	224
Bme1390I	CCNGG	2 cut(s)	291, 324
BmrFI	CCNGG	2 cut(s)	291, 324
Bsa29I	ATCGAT	1 cut(s)	390
BsaBI	GATNNNNATC	1 cut(s)	68
BsaJI	CCNNGG	1 cut(s)	290
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bse1I	ACTGG	1 cut(s)	350
Bse8I	GATNNNNATC	1 cut(s)	68
BseBI	CCWGG	2 cut(s)	291, 324
BseCI	ATCGAT	1 cut(s)	390
BseDI	CCNNGG	1 cut(s)	290
BseGI	GGATG	2 cut(s)	300, 378
BseJI	GATNNNNATC	1 cut(s)	68
BseMII	CTCAG	1 cut(s)	204
BseNI	ACTGG	1 cut(s)	350
BseXI	GCAGC	1 cut(s)	234
BshVI	ATCGAT	1 cut(s)	390
BsmAI	GTCTC	2 cut(s)	71, 132
Bsp1407I	TGTACA	1 cut(s)	297
BspCNI	CTCAG	1 cut(s)	203
BspDI	ATCGAT	1 cut(s)	390
BsrGI	TGTACA	1 cut(s)	297
BsrI	ACTGG	1 cut(s)	350
BssECI	CCNNGG	1 cut(s)	290
Bst2UI	CCWGG	2 cut(s)	291, 324
BstAUI	TGTACA	1 cut(s)	297
BstDEI	CTNAG	1 cut(s)	190
BstF5I	GGATG	2 cut(s)	300, 378
BstMAI	GTCTC	2 cut(s)	71, 132
BstNI	CCWGG	2 cut(s)	291, 324
BstSCI	CCNGG	2 cut(s)	289, 322
BstSFI	CTRYAG	1 cut(s)	317
BstV1I	GCAGC	1 cut(s)	234
Bsu15I	ATCGAT	1 cut(s)	390
BsuTUI	ATCGAT	1 cut(s)	390
BtsCI	GGATG	2 cut(s)	300, 378
BtsIMutI	CAGTG	1 cut(s)	34
ClaI	ATCGAT	1 cut(s)	390
Csp6I	GTAC	1 cut(s)	298
CviAII	CATG	2 cut(s)	124, 301
CviJI	RGCY	5 cut(s)	49, 98, 225, 272, 322
CviKI_1	RGCY	5 cut(s)	49, 98, 225, 272, 322
CviQI	GTAC	1 cut(s)	298
DdeI	CTNAG	1 cut(s)	190
Eco32I	GATATC	1 cut(s)	388
EcoRII	CCWGG	2 cut(s)	289, 322
EcoRV	GATATC	1 cut(s)	388
EcoT22I	ATGCAT	1 cut(s)	6
FaeI	CATG	2 cut(s)	127, 304
FaiI	YATR	6 cut(s)	90, 125, 237, 302, 395, 438
FatI	CATG	2 cut(s)	123, 300
Fnu4HI	GCNGC	1 cut(s)	223
FokI	GGATG	2 cut(s)	307, 385
Fsp4HI	GCNGC	1 cut(s)	223
FspBI	CTAG	1 cut(s)	95
GluI	GCNGC	1 cut(s)	223
Hin1II	CATG	2 cut(s)	127, 304
HinfI	GANTC	3 cut(s)	79, 146, 188
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	1 cut(s)	32
Hpy188I	TCNGA	2 cut(s)	151, 193
Hpy188III	TCNNGA	1 cut(s)	61
Hpy8I	GTNNAC	1 cut(s)	32
HpyAV	CCTTC	2 cut(s)	178, 370
HpyCH4IV	ACGT	1 cut(s)	57
HpyCH4V	TGCA	3 cut(s)	4, 88, 332
HpyF3I	CTNAG	1 cut(s)	190
HpySE526I	ACGT	1 cut(s)	57
Hsp92II	CATG	2 cut(s)	127, 304
LmnI	GCTCC	3 cut(s)	103, 230, 269
LpnPI	CCDG	7 cut(s)	219, 258, 276, 303, 309, 331, 336
Lsp1109I	GCAGC	1 cut(s)	234
MaeI	CTAG	1 cut(s)	95
MaeII	ACGT	1 cut(s)	57
MboII	GAAGA	4 cut(s)	291, 329, 395, 410
MluCI	AATT	4 cut(s)	197, 247, 282, 359
MlyI	GAGTC	2 cut(s)	73, 182
MnlI	CCTC	1 cut(s)	373
Mph1103I	ATGCAT	1 cut(s)	6
MseI	TTAA	1 cut(s)	366
MspR9I	CCNGG	2 cut(s)	291, 324
MvaI	CCWGG	2 cut(s)	291, 324
NlaIII	CATG	2 cut(s)	127, 304
NsiI	ATGCAT	1 cut(s)	6
PfeI	GAWTC	1 cut(s)	146
PkrI	GCNGC	1 cut(s)	224
PleI	GAGTC	2 cut(s)	73, 182
PpsI	GAGTC	2 cut(s)	73, 182
PsiI	TTATAA	1 cut(s)	237
Psp6I	CCWGG	2 cut(s)	289, 322
PspGI	CCWGG	2 cut(s)	289, 322
RsaI	GTAC	1 cut(s)	299
RsaNI	GTAC	1 cut(s)	298
SaqAI	TTAA	1 cut(s)	366
SatI	GCNGC	1 cut(s)	223
SchI	GAGTC	2 cut(s)	73, 182
ScrFI	CCNGG	2 cut(s)	291, 324
SetI	ASST	7 cut(s)	51, 60, 100, 215, 227, 274, 411
SfcI	CTRYAG	1 cut(s)	317
Sse9I	AATT	4 cut(s)	197, 247, 282, 359
SspMI	CTAG	1 cut(s)	95
StyD4I	CCNGG	2 cut(s)	289, 322
TaiI	ACGT	1 cut(s)	60
TaqI	TCGA	3 cut(s)	82, 277, 390
TasI	AATT	4 cut(s)	197, 247, 282, 359
TatI	WGTACW	1 cut(s)	297
TfiI	GAWTC	1 cut(s)	146
Tru1I	TTAA	1 cut(s)	366
Tru9I	TTAA	1 cut(s)	366
TscAI	CASTG	1 cut(s)	34
TseI	GCWGC	1 cut(s)	222
TspDTI	ATGAA	2 cut(s)	389, 425
TspRI	CASTG	1 cut(s)	34
XapI	RAATTY	3 cut(s)	197, 247, 282
XspI	CTAG	1 cut(s)	95
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.