Rmu_sc0001912.1_g000035

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001912.1
OG0000354
Physical Location & Seq
Reverse (-)
99277 .. 100739
1463 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001912.1_g000035.1.cds

Sequence Viewer

Length: 756 bp
atgttcggaatttcacggggtctacatagcgcacctttcataatggatgttgcaaactcctttggggtagttggcgcgtgcataatgctttctttccctatgagacatattggtgataggagcactgccgtcgatggtgttgatagggcgcatgggctcgatattgttgttggtgttgtgaccgctgtcttcgtggtacttgcaccacttgctgctgttccttggagaaaggctgactggacttctctggcgttggaggaggtggtggggtttctcccttatgtaatgaattatgcctgtgcgtggaggatggcctcactcatgacgtggtcatacgtggcgtttggatctttagcggcgaatggtccaggccttgaagcaaagagcggatttgggatttgcgctggggctcttgtctctgccaggatcaatctttgctccagttgctgcatcctttctaagattagggcagttgcgtcgccaacggctctggttgtggagcggttagtgcgtggttgtgactccacttcttgttccatcatcaatcatggtgggggtgggggacccattcccaacagttcggatgggttcagcgggacctgcatatgtattactggtgctggtaccaatcttccgtcattgggtcggctatgtctggtactctatgattgtttgctctgcgctgggttagcatttgcttccagcgccttcttcagctcgtcgaattttgacattagcgtggccacctgtttctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

251

Amino Acids

25.95

Weight (kDa)

6.84

Isoelectric Point (pI)

30.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 608
Acc65I GGTACC 1 cut(s) 623
AccB1I GGYRCC 1 cut(s) 623
AccBSI CCGCTC 2 cut(s) 387, 502
AccI GTMKAC 1 cut(s) 22
AccII CGCG 1 cut(s) 77
AciI CCGC 5 cut(s) 183, 356, 387, 502, 594
AclWI GGATC 2 cut(s) 355, 434
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 2 cut(s) 9, 724
AcuI CTGAAG 1 cut(s) 697
AfaI GTAC 3 cut(s) 198, 625, 660
AfiI CCNNNNNNNGG 2 cut(s) 303, 641
AgsI TTSAA 1 cut(s) 377
AjiI CACGTC 1 cut(s) 327
AjnI CCWGG 2 cut(s) 367, 422
AluBI AGCT 1 cut(s) 717
AluI AGCT 1 cut(s) 717
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 2 cut(s) 97, 421
AlwI GGATC 2 cut(s) 355, 434
AlwNI CAGNNNCTG 1 cut(s) 447
AoxI GGCC 3 cut(s) 312, 370, 741
ApeKI GCWGC 2 cut(s) 212, 447
ApoI RAATTY 2 cut(s) 9, 724
Asp718I GGTACC 1 cut(s) 623
AspLEI GCGC 6 cut(s) 32, 77, 151, 404, 683, 707
AspS9I GGNCC 3 cut(s) 365, 563, 597
AsuHPI GGTGA 1 cut(s) 125
AvaII GGWCC 3 cut(s) 365, 563, 597
BalI TGGCCA 1 cut(s) 743
BanI GGYRCC 1 cut(s) 623
BanII GRGCYC 2 cut(s) 159, 412
BbsI GAAGAC 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 2 cut(s) 199, 434
BccI CCATC 4 cut(s) 128, 304, 545, 578
BceAI ACGGC 2 cut(s) 113, 501
BcgI CGANNNNNNTGC 4 cut(s) 112, 146, 459, 493
BciT130I CCWGG 2 cut(s) 369, 424
BcoDI GTCTC 2 cut(s) 97, 421
BfoI RGCGCY 1 cut(s) 708
BfuAI ACCTGC 1 cut(s) 608
BisI GCNGC 3 cut(s) 213, 357, 448
BlsI GCNGC 3 cut(s) 214, 358, 449
Bme1390I CCNGG 2 cut(s) 369, 424
Bme18I GGWCC 3 cut(s) 365, 563, 597
BmgBI CACGTC 1 cut(s) 327
BmgT120I GGNCC 3 cut(s) 365, 563, 597
BmiI GGNNCC 4 cut(s) 564, 565, 598, 625
BmrFI CCNGG 2 cut(s) 369, 424
BmsI GCATC 1 cut(s) 459
BoxI GACNNNNGTC 1 cut(s) 185
BpiI GAAGAC 1 cut(s) 181
BpmI CTGGAG 1 cut(s) 424
BsaAI YACGTR 1 cut(s) 337
BsaJI CCNNGG 1 cut(s) 221
Bsc4I CCNNNNNNNGG 2 cut(s) 303, 641
Bse1I ACTGG 3 cut(s) 242, 441, 619
BseBI CCWGG 2 cut(s) 369, 424
BseDI CCNNGG 1 cut(s) 221
BseGI GGATG 4 cut(s) 52, 315, 450, 589
BseLI CCNNNNNNNGG 2 cut(s) 303, 641
BseNI ACTGG 3 cut(s) 242, 441, 619
BseRI GAGGAG 1 cut(s) 272
BseXI GCAGC 2 cut(s) 199, 434
BseYI CCCAGC 2 cut(s) 404, 683
Bsh1236I CGCG 1 cut(s) 77
BshFI GGCC 3 cut(s) 314, 372, 743
BshNI GGYRCC 1 cut(s) 623
BsiHKAI GWGCWC 1 cut(s) 125
BslFI GGGAC 2 cut(s) 576, 610
BslI CCNNNNNNNGG 2 cut(s) 303, 641
BsmAI GTCTC 2 cut(s) 97, 421
BsmFI GGGAC 2 cut(s) 576, 610
BsnI GGCC 3 cut(s) 314, 372, 743
Bsp1286I GDGCHC 3 cut(s) 125, 159, 412
Bsp143I GATC 2 cut(s) 347, 426
BspACI CCGC 5 cut(s) 183, 356, 387, 502, 594
BspANI GGCC 3 cut(s) 314, 372, 743
BspFNI CGCG 1 cut(s) 77
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 4 cut(s) 564, 565, 598, 625
BspMI ACCTGC 1 cut(s) 608
BspPI GGATC 2 cut(s) 355, 434
BspT107I GGYRCC 1 cut(s) 623
BsrBI CCGCTC 2 cut(s) 387, 502
BsrI ACTGG 3 cut(s) 242, 441, 619
BssECI CCNNGG 1 cut(s) 221
BssMI GATC 2 cut(s) 347, 426
BssT1I CCWWGG 1 cut(s) 221
Bst2UI CCWGG 2 cut(s) 369, 424
Bst4CI ACNGT 1 cut(s) 578
BstAPI GCANNNNNTGC 1 cut(s) 209
BstBAI YACGTR 1 cut(s) 337
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 1 cut(s) 459
BstF5I GGATG 4 cut(s) 52, 315, 450, 589
BstFNI CGCG 1 cut(s) 77
BstH2I RGCGCY 1 cut(s) 708
BstHHI GCGC 6 cut(s) 32, 77, 151, 404, 683, 707
BstKTI GATC 2 cut(s) 350, 429
BstMAI GTCTC 2 cut(s) 97, 421
BstMBI GATC 2 cut(s) 347, 426
BstMWI GCNNNNNNNGC 6 cut(s) 209, 444, 508, 600, 689, 704
BstNI CCWGG 2 cut(s) 369, 424
BstPAI GACNNNNGTC 1 cut(s) 185
BstSCI CCNGG 2 cut(s) 367, 422
BstUI CGCG 1 cut(s) 77
BstV1I GCAGC 2 cut(s) 199, 434
BstV2I GAAGAC 1 cut(s) 181
BstX2I RGATCY 1 cut(s) 347
BstYI RGATCY 1 cut(s) 347
BsuRI GGCC 3 cut(s) 314, 372, 743
BtrI CACGTC 1 cut(s) 327
BtsCI GGATG 4 cut(s) 52, 315, 450, 589
BtsI GCAGTG 1 cut(s) 123
BtsIMutI CAGTG 1 cut(s) 123
BveI ACCTGC 1 cut(s) 608
Cac8I GCNNGC 1 cut(s) 79
CaiI CAGNNNCTG 1 cut(s) 447
CciI TCATGA 1 cut(s) 321
CfoI GCGC 6 cut(s) 32, 77, 151, 404, 683, 707
Cfr13I GGNCC 3 cut(s) 365, 563, 597
CseI GACGC 1 cut(s) 465
Csp6I GTAC 3 cut(s) 197, 624, 659
CspCI CAANNNNNGTGG 2 cut(s) 532, 567
CviAII CATG 3 cut(s) 152, 322, 548
CviJI RGCY 9 cut(s) 157, 233, 314, 372, 410, 488, 649, 717, 743
CviKI_1 RGCY 9 cut(s) 157, 233, 314, 372, 410, 488, 649, 717, 743
CviQI GTAC 3 cut(s) 197, 624, 659
DdeI CTNAG 1 cut(s) 459
DpnI GATC 2 cut(s) 349, 428
DpnII GATC 2 cut(s) 347, 426
EaeI YGGCCR 1 cut(s) 741
Eco130I CCWWGG 1 cut(s) 221
Eco147I AGGCCT 1 cut(s) 372
Eco24I GRGCYC 2 cut(s) 159, 412
Eco47I GGWCC 3 cut(s) 365, 563, 597
Eco57I CTGAAG 1 cut(s) 697
EcoO109I RGGNCCY 2 cut(s) 563, 597
EcoRII CCWGG 2 cut(s) 367, 422
EcoT14I CCWWGG 1 cut(s) 221
EcoT38I GRGCYC 2 cut(s) 159, 412
ErhI CCWWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 155, 325, 551
FaqI GGGAC 2 cut(s) 576, 610
FatI CATG 3 cut(s) 151, 321, 547
FauI CCCGC 1 cut(s) 587
FauNDI CATATG 1 cut(s) 605
FblI GTMKAC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 213, 357, 448
FokI GGATG 4 cut(s) 59, 322, 437, 596
FriOI GRGCYC 2 cut(s) 159, 412
Fsp4HI GCNGC 3 cut(s) 213, 357, 448
GlaI GCGC 6 cut(s) 31, 76, 150, 403, 682, 706
GluI GCNGC 3 cut(s) 213, 357, 448
GsaI CCCAGC 2 cut(s) 408, 687
GsuI CTGGAG 1 cut(s) 424
HaeII RGCGCY 1 cut(s) 708
HaeIII GGCC 3 cut(s) 314, 372, 743
HgaI GACGC 1 cut(s) 465
HhaI GCGC 6 cut(s) 32, 77, 151, 404, 683, 707
Hin1II CATG 3 cut(s) 155, 325, 551
Hin6I GCGC 6 cut(s) 30, 75, 149, 402, 681, 705
HinP1I GCGC 6 cut(s) 30, 75, 149, 402, 681, 705
HinfI GANTC 1 cut(s) 521
HphI GGTGA 1 cut(s) 125
Hpy166II GTNNAC 1 cut(s) 23
Hpy188I TCNGA 3 cut(s) 8, 583, 755
Hpy188III TCNNGA 1 cut(s) 322
Hpy8I GTNNAC 1 cut(s) 23
Hpy99I CGWCG 3 cut(s) 134, 481, 724
HpyAV CCTTC 1 cut(s) 718
HpyCH4III ACNGT 1 cut(s) 578
HpyCH4IV ACGT 2 cut(s) 326, 336
HpyCH4V TGCA 5 cut(s) 53, 81, 203, 450, 603
HpyF10VI GCNNNNNNNGC 6 cut(s) 209, 444, 508, 600, 689, 704
HpyF3I CTNAG 1 cut(s) 459
HpySE526I ACGT 2 cut(s) 326, 336
Hsp92II CATG 3 cut(s) 155, 325, 551
HspAI GCGC 6 cut(s) 30, 75, 149, 402, 681, 705
KflI GGGWCCC 1 cut(s) 563
KpnI GGTACC 1 cut(s) 627
Kzo9I GATC 2 cut(s) 347, 426
LmnI GCTCC 3 cut(s) 120, 443, 499
Lsp1109I GCAGC 2 cut(s) 199, 434
LweI GCATC 1 cut(s) 459
MaeII ACGT 2 cut(s) 326, 336
MaeIII GTNAC 2 cut(s) 178, 518
MalI GATC 2 cut(s) 349, 428
MbiI CCGCTC 2 cut(s) 387, 502
MboI GATC 2 cut(s) 347, 426
MboII GAAGA 3 cut(s) 181, 623, 703
MflI RGATCY 1 cut(s) 347
MhlI GDGCHC 3 cut(s) 125, 159, 412
MlsI TGGCCA 1 cut(s) 743
MluCI AATT 3 cut(s) 9, 289, 724
MluNI TGGCCA 1 cut(s) 743
MlyI GAGTC 1 cut(s) 515
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 4 cut(s) 250, 253, 300, 325
Mox20I TGGCCA 1 cut(s) 743
MscI TGGCCA 1 cut(s) 743
MslI CAYNNNNRTG 2 cut(s) 111, 737
Msp20I TGGCCA 1 cut(s) 743
MspA1I CMGCKG 2 cut(s) 185, 594
MspR9I CCNGG 2 cut(s) 369, 424
MvaI CCWGG 2 cut(s) 369, 424
MvnI CGCG 1 cut(s) 77
MwoI GCNNNNNNNGC 6 cut(s) 209, 444, 508, 600, 689, 704
NdeI CATATG 1 cut(s) 605
NdeII GATC 2 cut(s) 347, 426
NlaIII CATG 3 cut(s) 155, 325, 551
NlaIV GGNNCC 4 cut(s) 564, 565, 598, 625
NmuCI GTSAC 2 cut(s) 178, 518
PagI TCATGA 1 cut(s) 321
PceI AGGCCT 1 cut(s) 372
PflFI GACNNNGTC 1 cut(s) 328
PkrI GCNGC 3 cut(s) 214, 358, 449
PleI GAGTC 1 cut(s) 515
PpsI GAGTC 1 cut(s) 515
Ppu21I YACGTR 1 cut(s) 337
PpuMI RGGWCCY 2 cut(s) 563, 597
PshAI GACNNNNGTC 1 cut(s) 185
Psp5II RGGWCCY 2 cut(s) 563, 597
Psp6I CCWGG 2 cut(s) 367, 422
PspFI CCCAGC 2 cut(s) 404, 683
PspGI CCWGG 2 cut(s) 367, 422
PspN4I GGNNCC 4 cut(s) 564, 565, 598, 625
PspPI GGNCC 3 cut(s) 365, 563, 597
PspPPI RGGWCCY 2 cut(s) 563, 597
PstNI CAGNNNCTG 1 cut(s) 447
PsuI RGATCY 1 cut(s) 347
PsyI GACNNNGTC 1 cut(s) 328
RsaI GTAC 3 cut(s) 198, 625, 660
RsaNI GTAC 3 cut(s) 197, 624, 659
RseI CAYNNNNRTG 2 cut(s) 111, 737
SatI GCNGC 3 cut(s) 213, 357, 448
Sau3AI GATC 2 cut(s) 347, 426
Sau96I GGNCC 3 cut(s) 365, 563, 597
SchI GAGTC 1 cut(s) 515
ScrFI CCNGG 2 cut(s) 369, 424
SduI GDGCHC 3 cut(s) 125, 159, 412
SetI ASST 7 cut(s) 37, 264, 329, 339, 602, 719, 749
SfaNI GCATC 1 cut(s) 459
SinI GGWCC 3 cut(s) 365, 563, 597
SmiMI CAYNNNNRTG 2 cut(s) 111, 737
Sse9I AATT 3 cut(s) 9, 289, 724
SseBI AGGCCT 1 cut(s) 372
SsiI CCGC 5 cut(s) 183, 356, 387, 502, 594
StuI AGGCCT 1 cut(s) 372
StyD4I CCNGG 2 cut(s) 367, 422
StyI CCWWGG 1 cut(s) 221
TaaI ACNGT 1 cut(s) 578
TaiI ACGT 2 cut(s) 329, 339
TaqI TCGA 3 cut(s) 132, 159, 722
TasI AATT 3 cut(s) 9, 289, 724
TauI GCSGC 1 cut(s) 359
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 2 cut(s) 178, 518
TseI GCWGC 2 cut(s) 212, 447
Tsp45I GTSAC 2 cut(s) 178, 518
TspDTI ATGAA 2 cut(s) 28, 302
TspGWI ACGGA 1 cut(s) 624
TspRI CASTG 1 cut(s) 130
Tth111I GACNNNGTC 1 cut(s) 328
VpaK11BI GGWCC 3 cut(s) 365, 563, 597
XapI RAATTY 2 cut(s) 9, 724
XmiI GTMKAC 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.