Rmu_sc0008245.1_g000007

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0008245.1
OG0000354
Physical Location & Seq
Forward (+)
17427 .. 19650
2224 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0008245.1_g000007.1.cds

Sequence Viewer

Length: 561 bp
atggccttctgttcaaggattcccacagatggcgccaatagctcccactacctatcaagtgaaatacagagggcgtcaaagggagaccgcggtggtcggttttctcttctccgatgcctaacttgtggagcttctgatgctatcttggcgtggtgcatcagcagtgctctgggggcaagccggggtttaggcagtagcctgcttagcagtgttcccgtaggttactcctttgactggagtcggtatcgctcgggggaagacgaagtggctaagatgattgattcaatctctaacgactccgcttcttcttcttcttcttttgttcatctcaccaacaagttgtttgctctcatgggaagcataatatttaggattgttttcggcgctagttttgagaagagtgatttcgaccacgacagatttcatcgagtgctgcaagatactgcaatcatgattgctggcttctctgcagccgattattttccttctcgtatcgggtcgattatagactggatttctggtagacataaagagcttgataaggtctccggaaacagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

186

Amino Acids

20.23

Weight (kDa)

7.72

Isoelectric Point (pI)

39.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 32
AccI GTMKAC 1 cut(s) 523
AccII CGCG 1 cut(s) 90
AccIII TCCGGA 1 cut(s) 548
AciI CCGC 3 cut(s) 88, 90, 300
AcyI GRCGYC 2 cut(s) 33, 74
AfiI CCNNNNNNNGG 2 cut(s) 29, 234
AgsI TTSAA 2 cut(s) 15, 285
AluBI AGCT 3 cut(s) 42, 131, 535
AluI AGCT 3 cut(s) 42, 131, 535
Alw21I GWGCWC 1 cut(s) 169
Alw26I GTCTC 2 cut(s) 78, 550
Ama87I CYCGRG 1 cut(s) 250
Aor13HI TCCGGA 1 cut(s) 548
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 2 cut(s) 433, 470
AspLEI GCGC 2 cut(s) 35, 386
AsuC2I CCSGG 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 322
AvaI CYCGRG 1 cut(s) 250
BanI GGYRCC 1 cut(s) 32
BbsI GAAGAC 1 cut(s) 264
Bbv12I GWGCWC 1 cut(s) 169
BbvI GCAGC 2 cut(s) 420, 482
BccI CCATC 1 cut(s) 23
BcnI CCSGG 1 cut(s) 182
BcoDI GTCTC 2 cut(s) 78, 550
BfaI CTAG 1 cut(s) 387
BfmI CTRYAG 1 cut(s) 468
BfoI RGCGCY 2 cut(s) 36, 387
BisI GCNGC 2 cut(s) 434, 471
BlpI GCTNAGC 1 cut(s) 203
BlsI GCNGC 2 cut(s) 435, 472
Bme1390I CCNGG 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 250
BmiI GGNNCC 1 cut(s) 34
BmrFI CCNGG 1 cut(s) 182
BmsI GCATC 3 cut(s) 104, 127, 165
BoxI GACNNNNGTC 1 cut(s) 237
BpiI GAAGAC 1 cut(s) 264
BpmI CTGGAG 1 cut(s) 256
Bpu1102I GCTNAGC 1 cut(s) 203
BpuMI CCSGG 1 cut(s) 182
BsaHI GRCGYC 2 cut(s) 33, 74
BsaI GGTCTC 2 cut(s) 78, 550
BsaJI CCNNGG 2 cut(s) 88, 181
BsaWI WCCGGW 1 cut(s) 548
Bsc4I CCNNNNNNNGG 2 cut(s) 29, 234
Bse1I ACTGG 2 cut(s) 239, 515
BseAI TCCGGA 1 cut(s) 548
BseDI CCNNGG 2 cut(s) 88, 181
BseLI CCNNNNNNNGG 2 cut(s) 29, 234
BseNI ACTGG 2 cut(s) 239, 515
BseXI GCAGC 2 cut(s) 420, 482
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 32
BsiHKAI GWGCWC 1 cut(s) 169
BsiHKCI CYCGRG 1 cut(s) 250
BsiSI CCGG 2 cut(s) 181, 549
BslI CCNNNNNNNGG 2 cut(s) 29, 234
BsmAI GTCTC 2 cut(s) 78, 550
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 2 cut(s) 78, 550
BsoBI CYCGRG 1 cut(s) 250
Bsp1286I GDGCHC 1 cut(s) 169
Bsp13I TCCGGA 1 cut(s) 548
Bsp1720I GCTNAGC 1 cut(s) 203
BspACI CCGC 3 cut(s) 88, 90, 300
BspANI GGCC 1 cut(s) 5
BspEI TCCGGA 1 cut(s) 548
BspFNI CGCG 1 cut(s) 90
BspHI TCATGA 1 cut(s) 450
BspLI GGNNCC 1 cut(s) 34
BspMAI CTGCAG 1 cut(s) 472
BspT107I GGYRCC 1 cut(s) 32
BspTNI GGTCTC 2 cut(s) 78, 550
BsrI ACTGG 2 cut(s) 239, 515
BssECI CCNNGG 2 cut(s) 88, 181
BssNI GRCGYC 2 cut(s) 33, 74
Bst6I CTCTTC 2 cut(s) 111, 392
BstACI GRCGYC 2 cut(s) 33, 74
BstC8I GCNNGC 3 cut(s) 178, 200, 460
BstDEI CTNAG 2 cut(s) 203, 270
BstDSI CCRYGG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 90
BstH2I RGCGCY 2 cut(s) 36, 387
BstHHI GCGC 2 cut(s) 35, 386
BstMAI GTCTC 2 cut(s) 78, 550
BstMWI GCNNNNNNNGC 5 cut(s) 39, 137, 146, 173, 204
BstPAI GACNNNNGTC 1 cut(s) 237
BstSCI CCNGG 1 cut(s) 180
BstSFI CTRYAG 1 cut(s) 468
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 2 cut(s) 420, 482
BstV2I GAAGAC 1 cut(s) 264
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 88
BtsI GCAGTG 2 cut(s) 169, 214
BtsIMutI CAGTG 2 cut(s) 169, 214
Cac8I GCNNGC 3 cut(s) 178, 200, 460
CciI TCATGA 1 cut(s) 450
CfoI GCGC 2 cut(s) 35, 386
Cfr42I CCGCGG 1 cut(s) 91
CseI GACGC 1 cut(s) 63
CviAII CATG 2 cut(s) 352, 451
CviJI RGCY 9 cut(s) 5, 42, 131, 180, 198, 269, 462, 473, 535
CviKI_1 RGCY 9 cut(s) 5, 42, 131, 180, 198, 269, 462, 473, 535
DdeI CTNAG 2 cut(s) 203, 270
DinI GGCGCC 1 cut(s) 34
Eam1104I CTCTTC 2 cut(s) 111, 392
EarI CTCTTC 2 cut(s) 111, 392
Eco31I GGTCTC 2 cut(s) 78, 550
Eco88I CYCGRG 1 cut(s) 250
EgeI GGCGCC 1 cut(s) 34
EheI GGCGCC 1 cut(s) 34
FaeI CATG 2 cut(s) 355, 454
FaiI YATR 5 cut(s) 353, 362, 452, 506, 528
FatI CATG 2 cut(s) 351, 450
FblI GTMKAC 1 cut(s) 523
Fnu4HI GCNGC 2 cut(s) 434, 471
Fsp4HI GCNGC 2 cut(s) 434, 471
FspBI CTAG 1 cut(s) 387
GlaI GCGC 2 cut(s) 34, 385
GluI GCNGC 2 cut(s) 434, 471
GsuI CTGGAG 1 cut(s) 256
HaeII RGCGCY 2 cut(s) 36, 387
HaeIII GGCC 1 cut(s) 5
HapII CCGG 2 cut(s) 181, 549
HgaI GACGC 1 cut(s) 63
HhaI GCGC 2 cut(s) 35, 386
Hin1I GRCGYC 2 cut(s) 33, 74
Hin1II CATG 2 cut(s) 355, 454
Hin6I GCGC 2 cut(s) 33, 384
HinP1I GCGC 2 cut(s) 33, 384
HinfI GANTC 4 cut(s) 19, 238, 281, 296
HpaII CCGG 2 cut(s) 181, 549
HphI GGTGA 1 cut(s) 322
Hpy166II GTNNAC 1 cut(s) 524
Hpy188I TCNGA 2 cut(s) 113, 136
Hpy188III TCNNGA 2 cut(s) 451, 549
Hpy8I GTNNAC 1 cut(s) 524
HpyAV CCTTC 2 cut(s) 16, 495
HpyCH4V TGCA 4 cut(s) 156, 436, 446, 470
HpyF10VI GCNNNNNNNGC 5 cut(s) 39, 137, 146, 173, 204
HpyF3I CTNAG 2 cut(s) 203, 270
Hsp92I GRCGYC 2 cut(s) 33, 74
Hsp92II CATG 2 cut(s) 355, 454
HspAI GCGC 2 cut(s) 33, 384
KasI GGCGCC 1 cut(s) 32
Kpn2I TCCGGA 1 cut(s) 548
KspI CCGCGG 1 cut(s) 91
LmnI GCTCC 2 cut(s) 47, 128
LpnPI CCDG 7 cut(s) 155, 194, 212, 220, 444, 496, 504
Lsp1109I GCAGC 2 cut(s) 420, 482
LweI GCATC 3 cut(s) 104, 127, 165
MaeI CTAG 1 cut(s) 387
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 7 cut(s) 98, 269, 297, 300, 303, 306, 409
MhlI GDGCHC 1 cut(s) 169
Mly113I GGCGCC 1 cut(s) 33
MlyI GAGTC 2 cut(s) 247, 290
MnlI CCTC 1 cut(s) 63
MroI TCCGGA 1 cut(s) 548
MspA1I CMGCKG 1 cut(s) 90
MspI CCGG 2 cut(s) 181, 549
MspR9I CCNGG 1 cut(s) 182
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 5 cut(s) 39, 137, 146, 173, 204
NarI GGCGCC 1 cut(s) 33
NciI CCSGG 1 cut(s) 182
NlaIII CATG 2 cut(s) 355, 454
NlaIV GGNNCC 1 cut(s) 34
PagI TCATGA 1 cut(s) 450
PfeI GAWTC 2 cut(s) 19, 281
PkrI GCNGC 2 cut(s) 435, 472
PleI GAGTC 2 cut(s) 246, 290
PluTI GGCGCC 1 cut(s) 36
PpsI GAGTC 2 cut(s) 246, 290
PshAI GACNNNNGTC 1 cut(s) 237
PspN4I GGNNCC 1 cut(s) 34
PstI CTGCAG 1 cut(s) 472
SacII CCGCGG 1 cut(s) 91
SatI GCNGC 2 cut(s) 434, 471
SchI GAGTC 2 cut(s) 247, 290
ScrFI CCNGG 1 cut(s) 182
SduI GDGCHC 1 cut(s) 169
SetI ASST 6 cut(s) 44, 54, 133, 223, 537, 546
SfaNI GCATC 3 cut(s) 104, 127, 165
SfcI CTRYAG 1 cut(s) 468
SfoI GGCGCC 1 cut(s) 34
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SsiI CCGC 3 cut(s) 88, 90, 300
SspDI GGCGCC 1 cut(s) 32
SspI AATATT 1 cut(s) 366
SspMI CTAG 1 cut(s) 387
StyD4I CCNGG 1 cut(s) 180
TaqI TCGA 3 cut(s) 408, 427, 500
TfiI GAWTC 2 cut(s) 19, 281
TscAI CASTG 2 cut(s) 169, 214
TseI GCWGC 2 cut(s) 433, 470
TspDTI ATGAA 2 cut(s) 314, 413
TspRI CASTG 2 cut(s) 169, 214
XmiI GTMKAC 1 cut(s) 523
XspI CTAG 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.