RchiOBHm_Chr4g0419481

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000354
Physical Location & Seq
Reverse (-)
44922643 .. 44924880
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38938

Sequence Viewer

Length: 1542 bp
ATGGCTGACAACACCGTCCCACTAATCTTATGGATTCCATTTCTCCTCCTTCTCCCTTTACTACTGCTTTTACTGAGAAAGCAGATCAATAAGCCACAAAAGCACTTCCCACCAAGCCCTCCTAAGCTTCCCATTATAGGCAACCTCCACCAGTTTACTCAATCTGGTTCATCACTTCATCAAAACCTATGGAGACTATCACAGAAATACGGACCACTCATGCTCTTACACATGGGTCGCAGACCTACCCTCATAATCTCTTCAGCTGAAGCAGCAAAACAGACGTTGAAAGATAATGATCTCCACTGTTGCAGTAGACCGGCCTCCTTGGGATCTCGCAGACTCACATTTAACTATCTAGACATAGCATTTTCGCCTTACGGTGAATATTGGCGAGAGATAAGAAAGATATGTGTGCATGAGATTTTCAGTGCGAAAGGGGTTGAGTCGTATAGGTCTATTAGAGAAGAAGAAGTCGTGAAGATGATTGATTCATTCTCTGACGCATCAGCTTCATCTTCTCCTGTTAACCTTACTGAGAAGTTGTTTGCTCTCATGAGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGAGCGATTTGGAGCATGAAAGATTTCTTCGAGTGCTTCTTGATAGTCGAGATATGCTTACAGGCTTCTCATCATGCGCAGCTGATTTCTTTCCTCCATGTATCGGGTGGATCATAGACAGGGTCTCCGGTAAACATAGAGAGTTTGACAGAGTTTCCAGGGAAGTTCATCGCTTTTTTCAGCAAGCGATTGATGACCATCTCAAACCTGGGAGGACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGGTCAAGAAGCAAACTGAGATTGGAGCTGCTCATCTCGGTCATAATAACATCAAGGCAGTTCTCTTGGATTTGTTTTTAGGAGGAGTAGACACCACTGCAACTGCCATGGTTTGGGCAATGGCAGAGCTAGCTACGAATATAAGAGTGATGAAGAAAGCACAGGAAGAAATTAGAAACTGCATTGGAAATAAAGGAAAAGCCACTGAAATTGATACAGAGCAGCTGCAGTATCTCAAGATGATAGTGAAAGAAACACTTCGACTACATCCCTCAGGTCCCCTACTTCTTCCAAGAGAAACCATGTCCCACTTCAAAGTCCTCAGCTATGATGTTGACCCCAAAACAACAATCTTTGTTAATGATTGGGCAATCTCACGAGATCCAGAATTTTGGAACGACCCAGAAAAGTTCATTCCAGAAAGATTTGATGATAGGTCTGTTGATTTTAAAGGGCAACACTTTGACTTCTTGCCGTTTGGAGCTGGTCGAAGAATCTGTCCAGGGATTTATATGGCAGCGACGACAATGGAGCTTATACTTGCCAAATTGTTGTGCTGCTTTGATTGGAAAGTGCCTGATGGAATGAATGAGGAAGATATCAAGATGGAAGAAACAACCCATGGGGTAACTATTTGCTTGAAAAATCCTCTCAACCTTGTCCCTATGAGATATTCTTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

513

Amino Acids

58.64

Weight (kDa)

7.26

Isoelectric Point (pI)

46.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 491 8.6e-104 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
Acc16I TGCGCA 1 cut(s) 679
AccB7I CCANNNNNTGG 1 cut(s) 972
AccI GTMKAC 2 cut(s) 316, 948
AclWI GGATC 3 cut(s) 340, 719, 1235
AcsI RAATTY 1 cut(s) 1247
AcuI CTGAAG 2 cut(s) 246, 288
AfiI CCNNNNNNNGG 3 cut(s) 137, 704, 972
AgsI TTSAA 3 cut(s) 289, 1174, 1501
AjnI CCWGG 3 cut(s) 758, 808, 1360
Alw26I GTCTC 2 cut(s) 187, 730
AlwI GGATC 3 cut(s) 340, 719, 1235
AoxI GGCC 1 cut(s) 321
ApeKI GCWGC 8 cut(s) 272, 680, 850, 887, 1081, 1084, 1376, 1416
ApoI RAATTY 1 cut(s) 1247
ArsI GACNNNNNNTTYG 2 cut(s) 1342, 1374
Asp700I GAANNNNTTC 2 cut(s) 624, 1116
AspLEI GCGC 1 cut(s) 680
AspS9I GGNCC 2 cut(s) 212, 1136
AsuHPI GGTGA 1 cut(s) 395
AsuNHI GCTAGC 1 cut(s) 988
AvaII GGWCC 2 cut(s) 212, 1136
AxyI CCTNAGG 1 cut(s) 1132
BauI CACGAG 1 cut(s) 1236
BbvCI CCTCAGC 1 cut(s) 1181
BbvI GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
BccI CCATC 3 cut(s) 807, 1433, 1459
BceAI ACGGC 1 cut(s) 1318
BciT130I CCWGG 3 cut(s) 760, 810, 1362
BcoDI GTCTC 2 cut(s) 187, 730
BfaI CTAG 2 cut(s) 359, 989
BfmI CTRYAG 1 cut(s) 1085
BisI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
BlsI GCNGC 8 cut(s) 274, 682, 852, 889, 1083, 1086, 1378, 1418
Bme1390I CCNGG 3 cut(s) 760, 810, 1362
Bme18I GGWCC 2 cut(s) 212, 1136
BmgT120I GGNCC 2 cut(s) 212, 1136
BmiI GGNNCC 1 cut(s) 1138
BmrFI CCNGG 3 cut(s) 760, 810, 1362
BmsI GCATC 1 cut(s) 515
BmtI GCTAGC 1 cut(s) 992
Bpu10I CCTNAGC 2 cut(s) 123, 1181
BpuEI CTTGAG 1 cut(s) 1079
BsaBI GATNNNNATC 2 cut(s) 297, 798
BsaI GGTCTC 1 cut(s) 730
BsaJI CCNNGG 7 cut(s) 327, 598, 759, 809, 966, 1361, 1480
BsaWI WCCGGW 1 cut(s) 728
BsaXI ACNNNNNCTCC 2 cut(s) 710, 740
Bsc4I CCNNNNNNNGG 3 cut(s) 137, 704, 972
Bse118I RCCGGY 1 cut(s) 319
Bse1I ACTGG 1 cut(s) 151
Bse21I CCTNAGG 1 cut(s) 1132
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 2 cut(s) 297, 798
BseBI CCWGG 3 cut(s) 760, 810, 1362
BseDI CCNNGG 7 cut(s) 327, 598, 759, 809, 966, 1361, 1480
BseGI GGATG 1 cut(s) 1126
BseJI GATNNNNATC 2 cut(s) 297, 798
BseLI CCNNNNNNNGG 3 cut(s) 137, 704, 972
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 5 cut(s) 65, 528, 867, 1146, 1195
BseNI ACTGG 1 cut(s) 151
BseRI GAGGAG 2 cut(s) 35, 957
BseXI GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
BshFI GGCC 1 cut(s) 323
BsiSI CCGG 2 cut(s) 320, 729
BslFI GGGAC 5 cut(s) 2, 601, 1122, 1150, 1505
BslI CCNNNNNNNGG 3 cut(s) 137, 704, 972
BsmAI GTCTC 2 cut(s) 187, 730
BsmFI GGGAC 5 cut(s) 2, 601, 1122, 1150, 1505
BsnI GGCC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 730
Bsp143I GATC 5 cut(s) 84, 298, 332, 711, 1240
Bsp19I CCATGG 2 cut(s) 966, 1480
BspANI GGCC 1 cut(s) 323
BspCNI CTCAG 5 cut(s) 66, 529, 868, 1145, 1194
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 1138
BspMAI CTGCAG 1 cut(s) 1089
BspOI GCTAGC 1 cut(s) 992
BspPI GGATC 3 cut(s) 340, 719, 1235
BspTNI GGTCTC 1 cut(s) 730
BsrDI GCAATG 1 cut(s) 984
BsrFI RCCGGY 1 cut(s) 319
BsrI ACTGG 1 cut(s) 151
BssAI RCCGGY 1 cut(s) 319
BssECI CCNNGG 7 cut(s) 327, 598, 759, 809, 966, 1361, 1480
BssMI GATC 5 cut(s) 84, 298, 332, 711, 1240
BssSI CACGAG 1 cut(s) 1236
BssT1I CCWWGG 4 cut(s) 327, 598, 966, 1480
Bst2BI CACGAG 1 cut(s) 1236
Bst2UI CCWGG 3 cut(s) 760, 810, 1362
Bst4CI ACNGT 3 cut(s) 16, 308, 383
Bst6I CTCTTC 1 cut(s) 265
BstC8I GCNNGC 2 cut(s) 786, 990
BstDEI CTNAG 6 cut(s) 74, 123, 537, 876, 1132, 1181
BstDSI CCRYGG 2 cut(s) 966, 1480
BstF5I GGATG 1 cut(s) 1126
BstHHI GCGC 1 cut(s) 680
BstKTI GATC 5 cut(s) 87, 301, 335, 714, 1243
BstMAI GTCTC 2 cut(s) 187, 730
BstMBI GATC 5 cut(s) 84, 298, 332, 711, 1240
BstMWI GCNNNNNNNGC 3 cut(s) 100, 272, 989
BstNI CCWGG 3 cut(s) 760, 810, 1362
BstSCI CCNGG 3 cut(s) 758, 808, 1360
BstSFI CTRYAG 1 cut(s) 1085
BstV1I GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
BstX2I RGATCY 2 cut(s) 332, 1240
BstXI CCANNNNNNTGG 1 cut(s) 1251
BstYI RGATCY 2 cut(s) 332, 1240
Bsu36I CCTNAGG 1 cut(s) 1132
BsuRI GGCC 1 cut(s) 323
BtgI CCRYGG 2 cut(s) 966, 1480
BtgZI GCGATG 1 cut(s) 755
BtsCI GGATG 1 cut(s) 1126
BtsI GCAGTG 1 cut(s) 954
BtsIMutI CAGTG 4 cut(s) 304, 436, 954, 1062
Cac8I GCNNGC 2 cut(s) 786, 990
CciI TCATGA 1 cut(s) 555
CfoI GCGC 1 cut(s) 680
Cfr10I RCCGGY 1 cut(s) 319
Cfr13I GGNCC 2 cut(s) 212, 1136
CseI GACGC 1 cut(s) 512
CspCI CAANNNNNGTGG 2 cut(s) 1051, 1086
DdeI CTNAG 6 cut(s) 74, 123, 537, 876, 1132, 1181
DpnI GATC 5 cut(s) 86, 300, 334, 713, 1242
DpnII GATC 5 cut(s) 84, 298, 332, 711, 1240
DraI TTTAAA 1 cut(s) 1309
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
Eam1104I CTCTTC 1 cut(s) 265
EarI CTCTTC 1 cut(s) 265
Eco130I CCWWGG 4 cut(s) 327, 598, 966, 1480
Eco31I GGTCTC 1 cut(s) 730
Eco32I GATATC 1 cut(s) 1459
Eco47I GGWCC 2 cut(s) 212, 1136
Eco57I CTGAAG 2 cut(s) 246, 288
Eco81I CCTNAGG 1 cut(s) 1132
EcoO109I RGGNCCY 1 cut(s) 1136
EcoRII CCWGG 3 cut(s) 758, 808, 1360
EcoRV GATATC 1 cut(s) 1459
EcoT14I CCWWGG 4 cut(s) 327, 598, 966, 1480
ErhI CCWWGG 4 cut(s) 327, 598, 966, 1480
FalI AAGNNNNNCTT 2 cut(s) 1101, 1133
FaqI GGGAC 5 cut(s) 2, 601, 1122, 1150, 1505
FblI GTMKAC 2 cut(s) 316, 948
Fnu4HI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
FokI GGATG 1 cut(s) 1113
Fsp4HI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
FspBI CTAG 2 cut(s) 359, 989
FspI TGCGCA 1 cut(s) 679
GlaI GCGC 1 cut(s) 679
GluI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
HaeIII GGCC 1 cut(s) 323
HapII CCGG 2 cut(s) 320, 729
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 680
Hin6I GCGC 1 cut(s) 678
HinP1I GCGC 1 cut(s) 678
HincII GTYRAC 2 cut(s) 529, 1195
HindII GTYRAC 2 cut(s) 529, 1195
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 5 cut(s) 34, 342, 446, 491, 1353
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 2 cut(s) 320, 729
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 6 cut(s) 156, 317, 529, 734, 949, 1195
Hpy188I TCNGA 1 cut(s) 502
Hpy8I GTNNAC 6 cut(s) 156, 317, 529, 734, 949, 1195
Hpy99I CGWCG 1 cut(s) 1384
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 3 cut(s) 16, 308, 383
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 5 cut(s) 312, 418, 959, 1041, 1087
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 272, 989
HpyF3I CTNAG 6 cut(s) 74, 123, 537, 876, 1132, 1181
HpySE526I ACGT 1 cut(s) 284
HspAI GCGC 1 cut(s) 678
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 5 cut(s) 84, 298, 332, 711, 1240
LmnI GCTCC 6 cut(s) 603, 613, 826, 884, 1340, 1390
Lsp1109I GCAGC 8 cut(s) 284, 692, 837, 874, 1071, 1093, 1388, 1403
LweI GCATC 1 cut(s) 515
MaeI CTAG 2 cut(s) 359, 989
MaeII ACGT 1 cut(s) 284
MaeIII GTNAC 1 cut(s) 1486
MalI GATC 5 cut(s) 86, 300, 334, 713, 1242
MboI GATC 5 cut(s) 84, 298, 332, 711, 1240
MflI RGATCY 2 cut(s) 332, 1240
MluCI AATT 5 cut(s) 567, 1029, 1068, 1247, 1406
MlyI GAGTC 2 cut(s) 336, 455
MroXI GAANNNNTTC 2 cut(s) 624, 1116
MseI TTAA 5 cut(s) 351, 528, 855, 1218, 1308
MspA1I CMGCKG 3 cut(s) 266, 683, 1084
MspI CCGG 2 cut(s) 320, 729
MspR9I CCNGG 3 cut(s) 760, 810, 1362
MvaI CCWGG 3 cut(s) 760, 810, 1362
MwoI GCNNNNNNNGC 3 cut(s) 100, 272, 989
NcoI CCATGG 2 cut(s) 966, 1480
NdeII GATC 5 cut(s) 84, 298, 332, 711, 1240
NheI GCTAGC 1 cut(s) 988
NlaIV GGNNCC 1 cut(s) 1138
NsbI TGCGCA 1 cut(s) 679
PagI TCATGA 1 cut(s) 555
PdmI GAANNNNTTC 2 cut(s) 624, 1116
PfeI GAWTC 3 cut(s) 34, 491, 1353
PflFI GACNNNGTC 1 cut(s) 722
PflMI CCANNNNNTGG 1 cut(s) 972
PkrI GCNGC 8 cut(s) 274, 682, 852, 889, 1083, 1086, 1378, 1418
PleI GAGTC 2 cut(s) 336, 454
PpsI GAGTC 2 cut(s) 336, 454
PpuMI RGGWCCY 1 cut(s) 1136
Psp5II RGGWCCY 1 cut(s) 1136
Psp6I CCWGG 3 cut(s) 758, 808, 1360
PspGI CCWGG 3 cut(s) 758, 808, 1360
PspN4I GGNNCC 1 cut(s) 1138
PspPI GGNCC 2 cut(s) 212, 1136
PspPPI RGGWCCY 1 cut(s) 1136
PstI CTGCAG 1 cut(s) 1089
PsuI RGATCY 2 cut(s) 332, 1240
PsyI GACNNNGTC 1 cut(s) 722
PvuII CAGCTG 3 cut(s) 266, 683, 1084
SaqAI TTAA 5 cut(s) 351, 528, 855, 1218, 1308
SatI GCNGC 8 cut(s) 273, 681, 851, 888, 1082, 1085, 1377, 1417
Sau3AI GATC 5 cut(s) 84, 298, 332, 711, 1240
Sau96I GGNCC 2 cut(s) 212, 1136
SchI GAGTC 2 cut(s) 336, 455
ScrFI CCNGG 3 cut(s) 760, 810, 1362
SfaNI GCATC 1 cut(s) 515
SfcI CTRYAG 1 cut(s) 1085
SinI GGWCC 2 cut(s) 212, 1136
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
Sse9I AATT 5 cut(s) 567, 1029, 1068, 1247, 1406
SspI AATATT 1 cut(s) 389
SspMI CTAG 2 cut(s) 359, 989
StyD4I CCNGG 3 cut(s) 758, 808, 1360
StyI CCWWGG 4 cut(s) 327, 598, 966, 1480
TaaI ACNGT 3 cut(s) 16, 308, 383
TaiI ACGT 1 cut(s) 287
TaqI TCGA 4 cut(s) 631, 649, 1120, 1348
TaqII GACCGA 1 cut(s) 887
TasI AATT 5 cut(s) 567, 1029, 1068, 1247, 1406
TfiI GAWTC 3 cut(s) 34, 491, 1353
Tru1I TTAA 5 cut(s) 351, 528, 855, 1218, 1308
Tru9I TTAA 5 cut(s) 351, 528, 855, 1218, 1308
TscAI CASTG 4 cut(s) 311, 436, 961, 1069
TseI GCWGC 8 cut(s) 272, 680, 850, 887, 1081, 1084, 1376, 1416
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 4 cut(s) 311, 436, 961, 1069
Tth111I GACNNNGTC 1 cut(s) 722
Van91I CCANNNNNTGG 1 cut(s) 972
VpaK11BI GGWCC 2 cut(s) 212, 1136
XapI RAATTY 1 cut(s) 1247
XbaI TCTAGA 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 3 cut(s) 27, 705, 806
XmiI GTMKAC 2 cut(s) 316, 948
XmnI GAANNNNTTC 2 cut(s) 624, 1116
XspI CTAG 2 cut(s) 359, 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.