Rmu_ssc0000467.1_g000029

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000467.1
OG0000354
Physical Location & Seq
Forward (+)
89137 .. 89565
429 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000467.1_g000029.1.cds

Sequence Viewer

Length: 429 bp
atgtggacaaaggggtcattcagtccactgtattgtatcatttttagcattttcgcatgcgctggcctgacggcctataggatcctggcggtgaatggcctaggccttgatgtgaacaaagggttttgtgtcggcgcttgggcgcttgccttcacccgggttagcctttgctctagttgccgcattctttctaggattagggcagttgcatcaccagcgggcccagtttgggtgttccgctgtgccagctcccacttgggggcaggcatattgcctttagttcttactttggttgcagagcggtcggtgcgcggttatgactccgcttcttgctgtattatcaattgtggcgggggaggtggaccccattcccaacagttccgaggggttcagcggtccttgcatctatatgatttgtgtgggctctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

142

Amino Acids

15.05

Weight (kDa)

9.21

Isoelectric Point (pI)

43.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 301
AccII CGCG 1 cut(s) 312
AciI CCGC 9 cut(s) 89, 181, 218, 238, 301, 312, 324, 351, 394
AclWI GGATC 2 cut(s) 76, 89
AfiI CCNNNNNNNGG 4 cut(s) 156, 229, 258, 259
AjnI CCWGG 1 cut(s) 84
AluBI AGCT 1 cut(s) 249
AluI AGCT 1 cut(s) 249
AlwI GGATC 2 cut(s) 76, 89
Ama87I CYCGRG 1 cut(s) 156
AoxI GGCC 5 cut(s) 64, 72, 97, 103, 220
ApaI GGGCCC 1 cut(s) 224
AspA2I CCTAGG 1 cut(s) 100
AspLEI GCGC 4 cut(s) 62, 137, 145, 312
AspS9I GGNCC 4 cut(s) 220, 221, 362, 396
AsuC2I CCSGG 2 cut(s) 157, 158
AsuHPI GGTGA 3 cut(s) 103, 145, 204
AvaI CYCGRG 1 cut(s) 156
AvaII GGWCC 2 cut(s) 362, 396
AvrII CCTAGG 1 cut(s) 100
BaeGI GKGCMC 1 cut(s) 224
BamHI GGATCC 1 cut(s) 81
BanII GRGCYC 2 cut(s) 224, 426
BceAI ACGGC 1 cut(s) 87
BcgI CGANNNNNNTGC 2 cut(s) 285, 319
BciT130I CCWGG 1 cut(s) 86
BcnI CCSGG 2 cut(s) 157, 158
BfaI CTAG 3 cut(s) 101, 174, 192
BfmI CTRYAG 1 cut(s) 76
BfoI RGCGCY 2 cut(s) 138, 146
BisI GCNGC 1 cut(s) 181
BlnI CCTAGG 1 cut(s) 100
BlsI GCNGC 1 cut(s) 182
Bme1390I CCNGG 3 cut(s) 86, 157, 158
Bme18I GGWCC 2 cut(s) 362, 396
BmeT110I CYCGRG 1 cut(s) 156
BmgT120I GGNCC 4 cut(s) 220, 221, 362, 396
BmiI GGNNCC 3 cut(s) 83, 222, 364
BmrFI CCNGG 3 cut(s) 86, 157, 158
BmrI ACTGGG 1 cut(s) 218
BmsI GCATC 2 cut(s) 218, 412
BmuI ACTGGG 1 cut(s) 218
BpuMI CCSGG 2 cut(s) 157, 158
BsaJI CCNNGG 3 cut(s) 100, 156, 382
Bsc4I CCNNNNNNNGG 4 cut(s) 156, 229, 258, 259
Bse1I ACTGG 1 cut(s) 224
BseBI CCWGG 1 cut(s) 86
BseDI CCNNGG 3 cut(s) 100, 156, 382
BseLI CCNNNNNNNGG 4 cut(s) 156, 229, 258, 259
BseNI ACTGG 1 cut(s) 224
BseSI GKGCMC 1 cut(s) 224
Bsh1236I CGCG 1 cut(s) 312
Bsh1285I CGRYCG 1 cut(s) 305
BshFI GGCC 5 cut(s) 66, 74, 99, 105, 222
BsiEI CGRYCG 1 cut(s) 305
BsiHKCI CYCGRG 1 cut(s) 156
BsiSI CCGG 1 cut(s) 157
BslI CCNNNNNNNGG 4 cut(s) 156, 229, 258, 259
BsmI GAATGC 1 cut(s) 183
BsnI GGCC 5 cut(s) 66, 74, 99, 105, 222
BsoBI CYCGRG 1 cut(s) 156
Bsp120I GGGCCC 1 cut(s) 220
Bsp1286I GDGCHC 2 cut(s) 224, 426
Bsp143I GATC 1 cut(s) 81
BspACI CCGC 9 cut(s) 89, 181, 218, 238, 301, 312, 324, 351, 394
BspANI GGCC 5 cut(s) 66, 74, 99, 105, 222
BspFNI CGCG 1 cut(s) 312
BspLI GGNNCC 3 cut(s) 83, 222, 364
BspPI GGATC 2 cut(s) 76, 89
BsrBI CCGCTC 1 cut(s) 301
BsrI ACTGG 1 cut(s) 224
BssECI CCNNGG 3 cut(s) 100, 156, 382
BssMI GATC 1 cut(s) 81
BssT1I CCWWGG 1 cut(s) 100
Bst2UI CCWGG 1 cut(s) 86
Bst4CI ACNGT 2 cut(s) 30, 378
BstC8I GCNNGC 6 cut(s) 58, 64, 147, 220, 247, 265
BstFNI CGCG 1 cut(s) 312
BstH2I RGCGCY 2 cut(s) 138, 146
BstHHI GCGC 4 cut(s) 62, 137, 145, 312
BstKTI GATC 1 cut(s) 84
BstMBI GATC 1 cut(s) 81
BstMCI CGRYCG 1 cut(s) 305
BstMWI GCNNNNNNNGC 5 cut(s) 177, 215, 246, 307, 400
BstNI CCWGG 1 cut(s) 86
BstNSI RCATGY 1 cut(s) 60
BstSCI CCNGG 3 cut(s) 84, 155, 156
BstSFI CTRYAG 1 cut(s) 76
BstSLI GKGCMC 1 cut(s) 224
BstUI CGCG 1 cut(s) 312
BstX2I RGATCY 1 cut(s) 81
BstYI RGATCY 1 cut(s) 81
BsuRI GGCC 5 cut(s) 66, 74, 99, 105, 222
BtsIMutI CAGTG 1 cut(s) 26
Cac8I GCNNGC 6 cut(s) 58, 64, 147, 220, 247, 265
CfoI GCGC 4 cut(s) 62, 137, 145, 312
Cfr13I GGNCC 4 cut(s) 220, 221, 362, 396
Cfr9I CCCGGG 1 cut(s) 156
CviAII CATG 1 cut(s) 57
CviJI RGCY 8 cut(s) 66, 74, 99, 105, 165, 222, 249, 424
CviKI_1 RGCY 8 cut(s) 66, 74, 99, 105, 165, 222, 249, 424
DpnI GATC 1 cut(s) 83
DpnII GATC 1 cut(s) 81
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
Eco130I CCWWGG 1 cut(s) 100
Eco147I AGGCCT 1 cut(s) 105
Eco24I GRGCYC 2 cut(s) 224, 426
Eco47I GGWCC 2 cut(s) 362, 396
Eco88I CYCGRG 1 cut(s) 156
EcoRII CCWGG 1 cut(s) 84
EcoT14I CCWWGG 1 cut(s) 100
EcoT38I GRGCYC 2 cut(s) 224, 426
ErhI CCWWGG 1 cut(s) 100
FaeI CATG 1 cut(s) 60
FaiI YATR 6 cut(s) 58, 78, 269, 318, 409, 411
FatI CATG 1 cut(s) 56
FauI CCCGC 2 cut(s) 211, 344
Fnu4HI GCNGC 1 cut(s) 181
FriOI GRGCYC 2 cut(s) 224, 426
Fsp4HI GCNGC 1 cut(s) 181
FspBI CTAG 3 cut(s) 101, 174, 192
GlaI GCGC 4 cut(s) 61, 136, 144, 311
GluI GCNGC 1 cut(s) 181
HaeII RGCGCY 2 cut(s) 138, 146
HaeIII GGCC 5 cut(s) 66, 74, 99, 105, 222
HapII CCGG 1 cut(s) 157
HhaI GCGC 4 cut(s) 62, 137, 145, 312
Hin1II CATG 1 cut(s) 60
Hin6I GCGC 4 cut(s) 60, 135, 143, 310
HinP1I GCGC 4 cut(s) 60, 135, 143, 310
HinfI GANTC 1 cut(s) 320
HpaII CCGG 1 cut(s) 157
HphI GGTGA 3 cut(s) 103, 145, 204
Hpy166II GTNNAC 4 cut(s) 6, 26, 115, 362
Hpy188I TCNGA 1 cut(s) 383
Hpy8I GTNNAC 4 cut(s) 6, 26, 115, 362
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 2 cut(s) 30, 378
HpyCH4V TGCA 3 cut(s) 209, 296, 403
HpyF10VI GCNNNNNNNGC 5 cut(s) 177, 215, 246, 307, 400
Hsp92II CATG 1 cut(s) 60
HspAI GCGC 4 cut(s) 60, 135, 143, 310
Kzo9I GATC 1 cut(s) 81
LmnI GCTCC 1 cut(s) 254
LpnPI CCDG 9 cut(s) 48, 71, 80, 98, 170, 228, 237, 249, 259
LweI GCATC 2 cut(s) 218, 412
MaeI CTAG 3 cut(s) 101, 174, 192
MalI GATC 1 cut(s) 83
MbiI CCGCTC 1 cut(s) 301
MboI GATC 1 cut(s) 81
MfeI CAATTG 1 cut(s) 343
MflI RGATCY 1 cut(s) 81
MhlI GDGCHC 2 cut(s) 224, 426
MluCI AATT 1 cut(s) 343
MlyI GAGTC 1 cut(s) 314
MnlI CCTC 2 cut(s) 350, 377
MslI CAYNNNNRTG 1 cut(s) 408
MspA1I CMGCKG 3 cut(s) 218, 240, 394
MspI CCGG 1 cut(s) 157
MspR9I CCNGG 3 cut(s) 86, 157, 158
MunI CAATTG 1 cut(s) 343
Mva1269I GAATGC 1 cut(s) 183
MvaI CCWGG 1 cut(s) 86
MvnI CGCG 1 cut(s) 312
MwoI GCNNNNNNNGC 5 cut(s) 177, 215, 246, 307, 400
NciI CCSGG 2 cut(s) 157, 158
NdeII GATC 1 cut(s) 81
NlaIII CATG 1 cut(s) 60
NlaIV GGNNCC 3 cut(s) 83, 222, 364
NspI RCATGY 1 cut(s) 60
PaeI GCATGC 1 cut(s) 60
PceI AGGCCT 1 cut(s) 105
PctI GAATGC 1 cut(s) 183
PkrI GCNGC 1 cut(s) 182
PleI GAGTC 1 cut(s) 314
PpsI GAGTC 1 cut(s) 314
Psp6I CCWGG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 84
PspN4I GGNNCC 3 cut(s) 83, 222, 364
PspOMI GGGCCC 1 cut(s) 220
PspPI GGNCC 4 cut(s) 220, 221, 362, 396
PsuI RGATCY 1 cut(s) 81
RseI CAYNNNNRTG 1 cut(s) 408
SatI GCNGC 1 cut(s) 181
Sau3AI GATC 1 cut(s) 81
Sau96I GGNCC 4 cut(s) 220, 221, 362, 396
SchI GAGTC 1 cut(s) 314
ScrFI CCNGG 3 cut(s) 86, 157, 158
SduI GDGCHC 2 cut(s) 224, 426
SetI ASST 2 cut(s) 251, 361
SfaNI GCATC 2 cut(s) 218, 412
SfcI CTRYAG 1 cut(s) 76
SinI GGWCC 2 cut(s) 362, 396
SmaI CCCGGG 1 cut(s) 158
SmiMI CAYNNNNRTG 1 cut(s) 408
SphI GCATGC 1 cut(s) 60
Sse9I AATT 1 cut(s) 343
SseBI AGGCCT 1 cut(s) 105
SsiI CCGC 9 cut(s) 89, 181, 218, 238, 301, 312, 324, 351, 394
SspMI CTAG 3 cut(s) 101, 174, 192
StuI AGGCCT 1 cut(s) 105
StyD4I CCNGG 3 cut(s) 84, 155, 156
StyI CCWWGG 1 cut(s) 100
TaaI ACNGT 2 cut(s) 30, 378
TasI AATT 1 cut(s) 343
TauI GCSGC 1 cut(s) 183
TscAI CASTG 1 cut(s) 33
TspMI CCCGGG 1 cut(s) 156
TspRI CASTG 1 cut(s) 33
VpaK11BI GGWCC 2 cut(s) 362, 396
XceI RCATGY 1 cut(s) 60
XcmI CCANNNNNNNNNTGG 1 cut(s) 253
XmaI CCCGGG 1 cut(s) 156
XmaJI CCTAGG 1 cut(s) 100
XspI CTAG 3 cut(s) 101, 174, 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.