RLG00000006820

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000354
Physical Location & Seq
Forward (+)
10788204 .. 10790689
2486 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000006820

Sequence Viewer

Length: 816 bp
ATGAAGCCGACGGCGGTCCAATCTTTCGACCTTGTTATCCAATTAGGTAAATTGGTGGAGCAGCCGATCGATGGTTACAAGTCCGGTCAGAAGTACTCAATCTCAGTAGCGTCGGTGTTAGCTCGGTCTGATCTTCGAACCGGTCTGATTACGGTTGCTCAGTCCGAGATACTCGTTTTCGGTAGCGTCGGCGTAGGCTTCGGATTTGAATCTCTGTCGGTTCCAAAGCGATCTGTGAGGGAAAACTTCTTGGGTTCGGCTAGCACATCTCAGTCGAGGTGGGTGTTAAGCAGGCGGGATTTGTTTCTGGCTGGAATAGATACTAGTGCAATTACCATGGTGTGGGCGATGGCAGAGCTTGCGAGGAAGCCGAGAGTGATGAACAAAGCACAGGAAGAAGTTACAAACTTGGTTGGAAAGAAAGGAAAAATGATAGTTAAAGAAACACTTCGGCTGCATCCTCCAGTTCCTCTAATTCTTCCAAGAGAGACCATGTCCCCTTTTAAAGTTCTTGAATTTTGGAGAGACCCAGAAGAGTTCATCCCAGAAAGGTTCGATGATAGCTCCGTAGATTTTAAAGGGCAGCACTTTGAGTTCTTGCCATTTAGAGCTGGTCGGAGAATGTGTCCGGGGATCTACATGGGGACAGCTACAGTGGAGCTCGGACTTGCAAACATGCTGTACTGTTTTGATTGGAAATTGTCGGAGGGAATGAAGGAGGAAGATATTAACATGGAAGAAACAACTGGGTCATTTTCCATTACTGTCTCTAAGAAAACTTCTCTTGACCTTGTCCCCCTAAAAGTCTATTGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

272

Amino Acids

30.36

Weight (kDa)

8.35

Isoelectric Point (pI)

46.51

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 100 - 170 5.4e-16 Cytochrome P450
p450 PF00067 172 - 247 4.3e-18 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 342
AciI CCGC 2 cut(s) 14, 295
AclWI GGATC 1 cut(s) 641
AcsI RAATTY 1 cut(s) 515
AfaI GTAC 2 cut(s) 95, 683
AfiI CCNNNNNNNGG 2 cut(s) 71, 342
AgeI ACCGGT 1 cut(s) 140
AgsI TTSAA 2 cut(s) 209, 515
AhlI ACTAGT 1 cut(s) 323
AluBI AGCT 6 cut(s) 122, 358, 564, 611, 650, 661
AluI AGCT 6 cut(s) 122, 358, 564, 611, 650, 661
Alw21I GWGCWC 1 cut(s) 663
Alw26I GTCTC 3 cut(s) 482, 519, 772
AlwI GGATC 1 cut(s) 641
ApeKI GCWGC 3 cut(s) 61, 454, 583
ApoI RAATTY 1 cut(s) 515
AsiGI ACCGGT 1 cut(s) 140
Asp700I GAANNNNTTC 1 cut(s) 447
AspS9I GGNCC 1 cut(s) 16
AsuC2I CCSGG 1 cut(s) 630
AsuII TTCGAA 1 cut(s) 136
AsuNHI GCTAGC 1 cut(s) 260
AvaII GGWCC 1 cut(s) 16
BanII GRGCYC 1 cut(s) 663
Bbv12I GWGCWC 1 cut(s) 663
BbvI GCAGC 3 cut(s) 73, 441, 595
BccI CCATC 2 cut(s) 65, 343
BceAI ACGGC 1 cut(s) 27
BcnI CCSGG 1 cut(s) 630
BcoDI GTCTC 3 cut(s) 482, 519, 772
BcuI ACTAGT 1 cut(s) 323
BfaI CTAG 2 cut(s) 261, 324
BfmI CTRYAG 1 cut(s) 651
BisI GCNGC 3 cut(s) 62, 455, 584
BlsI GCNGC 3 cut(s) 63, 456, 585
BmcAI AGTACT 1 cut(s) 95
Bme1390I CCNGG 1 cut(s) 630
Bme18I GGWCC 1 cut(s) 16
BmgT120I GGNCC 1 cut(s) 16
BmiI GGNNCC 1 cut(s) 222
BmrFI CCNGG 1 cut(s) 630
BmrI ACTGGG 1 cut(s) 756
BmsI GCATC 1 cut(s) 466
BmtI GCTAGC 1 cut(s) 264
BmuI ACTGGG 1 cut(s) 756
BoxI GACNNNNGTC 1 cut(s) 14
BpmI CTGGAG 1 cut(s) 447
Bpu14I TTCGAA 1 cut(s) 136
BpuMI CCSGG 1 cut(s) 630
Bsa29I ATCGAT 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 208
BsaI GGTCTC 2 cut(s) 482, 519
BsaJI CCNNGG 2 cut(s) 336, 629
BsaWI WCCGGW 2 cut(s) 83, 140
BsaXI ACNNNNNCTCC 2 cut(s) 610, 640
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 342
Bse118I RCCGGY 1 cut(s) 140
Bse1I ACTGG 2 cut(s) 464, 751
Bse8I GATNNNNATC 1 cut(s) 208
BseCI ATCGAT 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 336, 629
BseGI GGATG 2 cut(s) 457, 540
BseJI GATNNNNATC 1 cut(s) 208
BseLI CCNNNNNNNGG 2 cut(s) 71, 342
BseMII CTCAG 3 cut(s) 117, 173, 284
BseNI ACTGG 2 cut(s) 464, 751
BseXI GCAGC 3 cut(s) 73, 441, 595
Bsh1285I CGRYCG 1 cut(s) 69
BshTI ACCGGT 1 cut(s) 140
BshVI ATCGAT 1 cut(s) 69
BsiEI CGRYCG 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 663
BsiSI CCGG 3 cut(s) 84, 141, 629
BslFI GGGAC 3 cut(s) 481, 658, 779
BslI CCNNNNNNNGG 2 cut(s) 71, 342
BsmAI GTCTC 3 cut(s) 482, 519, 772
BsmFI GGGAC 3 cut(s) 481, 658, 779
Bso31I GGTCTC 2 cut(s) 482, 519
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 663
Bsp143I GATC 4 cut(s) 66, 130, 230, 633
Bsp19I CCATGG 1 cut(s) 336
BspACI CCGC 2 cut(s) 14, 295
BspCNI CTCAG 3 cut(s) 116, 172, 283
BspDI ATCGAT 1 cut(s) 69
BspLI GGNNCC 1 cut(s) 222
BspOI GCTAGC 1 cut(s) 264
BspPI GGATC 1 cut(s) 641
BspT104I TTCGAA 1 cut(s) 136
BspTNI GGTCTC 2 cut(s) 482, 519
BsrFI RCCGGY 1 cut(s) 140
BsrI ACTGG 2 cut(s) 464, 751
BssAI RCCGGY 1 cut(s) 140
BssECI CCNNGG 2 cut(s) 336, 629
BssMI GATC 4 cut(s) 66, 130, 230, 633
BssT1I CCWWGG 1 cut(s) 336
Bst4CI ACNGT 4 cut(s) 154, 655, 686, 766
Bst6I CTCTTC 1 cut(s) 528
BstAPI GCANNNNNTGC 1 cut(s) 359
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 3 cut(s) 262, 293, 360
BstDEI CTNAG 4 cut(s) 103, 159, 270, 771
BstDSI CCRYGG 1 cut(s) 336
BstF5I GGATG 2 cut(s) 457, 540
BstKTI GATC 4 cut(s) 69, 133, 233, 636
BstMAI GTCTC 3 cut(s) 482, 519, 772
BstMBI GATC 4 cut(s) 66, 130, 230, 633
BstMCI CGRYCG 1 cut(s) 69
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNSI RCATGY 1 cut(s) 679
BstPAI GACNNNNGTC 1 cut(s) 14
BstSCI CCNGG 1 cut(s) 628
BstSFI CTRYAG 1 cut(s) 651
BstV1I GCAGC 3 cut(s) 73, 441, 595
BstX2I RGATCY 1 cut(s) 633
BstYI RGATCY 1 cut(s) 633
Bsu15I ATCGAT 1 cut(s) 69
BsuTUI ATCGAT 1 cut(s) 69
BtgI CCRYGG 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 362
BtsCI GGATG 2 cut(s) 457, 540
BtsIMutI CAGTG 1 cut(s) 660
Cac8I GCNNGC 3 cut(s) 262, 293, 360
Cfr10I RCCGGY 1 cut(s) 140
Cfr13I GGNCC 1 cut(s) 16
ClaI ATCGAT 1 cut(s) 69
CseI GACGC 2 cut(s) 99, 175
Csp6I GTAC 2 cut(s) 94, 682
CspAI ACCGGT 1 cut(s) 140
CviAII CATG 5 cut(s) 337, 493, 640, 676, 733
CviQI GTAC 2 cut(s) 94, 682
DdeI CTNAG 4 cut(s) 103, 159, 270, 771
DpnI GATC 4 cut(s) 68, 132, 232, 635
DpnII GATC 4 cut(s) 66, 130, 230, 633
DraI TTTAAA 2 cut(s) 505, 577
Eam1104I CTCTTC 1 cut(s) 528
EarI CTCTTC 1 cut(s) 528
Ecl136II GAGCTC 1 cut(s) 661
Eco130I CCWWGG 1 cut(s) 336
Eco24I GRGCYC 1 cut(s) 663
Eco31I GGTCTC 2 cut(s) 482, 519
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 661
EcoICRI GAGCTC 1 cut(s) 661
EcoT14I CCWWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 663
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 5 cut(s) 340, 496, 643, 679, 736
FaiI YATR 5 cut(s) 338, 494, 641, 677, 734
FalI AAGNNNNNCTT 2 cut(s) 432, 464
FaqI GGGAC 3 cut(s) 481, 658, 779
FatI CATG 5 cut(s) 336, 492, 639, 675, 732
FauI CCCGC 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 62, 455, 584
FokI GGATG 2 cut(s) 444, 527
FriOI GRGCYC 1 cut(s) 663
Fsp4HI GCNGC 3 cut(s) 62, 455, 584
FspBI CTAG 2 cut(s) 261, 324
GluI GCNGC 3 cut(s) 62, 455, 584
GsuI CTGGAG 1 cut(s) 447
HapII CCGG 3 cut(s) 84, 141, 629
HgaI GACGC 2 cut(s) 99, 175
Hin1II CATG 5 cut(s) 340, 496, 643, 679, 736
HinfI GANTC 1 cut(s) 209
HpaII CCGG 3 cut(s) 84, 141, 629
Hpy188I TCNGA 8 cut(s) 90, 130, 147, 166, 203, 618, 665, 706
Hpy188III TCNNGA 2 cut(s) 512, 785
Hpy99I CGWCG 3 cut(s) 13, 115, 191
HpyAV CCTTC 1 cut(s) 709
HpyCH4III ACNGT 4 cut(s) 154, 655, 686, 766
HpyCH4V TGCA 3 cut(s) 329, 457, 671
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
HpyF3I CTNAG 4 cut(s) 103, 159, 270, 771
Hsp92II CATG 5 cut(s) 340, 496, 643, 679, 736
Kzo9I GATC 4 cut(s) 66, 130, 230, 633
LmnI GCTCC 3 cut(s) 58, 569, 658
Lsp1109I GCAGC 3 cut(s) 73, 441, 595
LweI GCATC 1 cut(s) 466
MaeI CTAG 2 cut(s) 261, 324
MaeIII GTNAC 2 cut(s) 74, 400
MalI GATC 4 cut(s) 68, 132, 232, 635
MboI GATC 4 cut(s) 66, 130, 230, 633
MboII GAAGA 6 cut(s) 125, 407, 470, 545, 734, 749
MflI RGATCY 1 cut(s) 633
MhlI GDGCHC 1 cut(s) 663
MluCI AATT 6 cut(s) 41, 50, 330, 474, 515, 698
MmeI TCCRAC 3 cut(s) 394, 596, 684
MnlI CCTC 7 cut(s) 231, 270, 357, 471, 480, 700, 712
MroXI GAANNNNTTC 1 cut(s) 447
MseI TTAA 5 cut(s) 287, 438, 504, 576, 729
MspI CCGG 3 cut(s) 84, 141, 629
MspR9I CCNGG 1 cut(s) 630
MwoI GCNNNNNNNGC 1 cut(s) 359
NciI CCSGG 1 cut(s) 630
NcoI CCATGG 1 cut(s) 336
NdeII GATC 4 cut(s) 66, 130, 230, 633
NheI GCTAGC 1 cut(s) 260
NlaIII CATG 5 cut(s) 340, 496, 643, 679, 736
NlaIV GGNNCC 1 cut(s) 222
NmeAIII GCCGAG 1 cut(s) 396
NspI RCATGY 1 cut(s) 679
NspV TTCGAA 1 cut(s) 136
PdmI GAANNNNTTC 1 cut(s) 447
PfeI GAWTC 1 cut(s) 209
PflFI GACNNNGTC 2 cut(s) 493, 791
PflMI CCANNNNNTGG 1 cut(s) 342
PinAI ACCGGT 1 cut(s) 140
PkrI GCNGC 3 cut(s) 63, 456, 585
Ple19I CGATCG 1 cut(s) 69
PshAI GACNNNNGTC 1 cut(s) 14
Psp124BI GAGCTC 1 cut(s) 663
PspN4I GGNNCC 1 cut(s) 222
PspPI GGNCC 1 cut(s) 16
PsuI RGATCY 1 cut(s) 633
PsyI GACNNNGTC 2 cut(s) 493, 791
PvuI CGATCG 1 cut(s) 69
RsaI GTAC 2 cut(s) 95, 683
RsaNI GTAC 2 cut(s) 94, 682
SacI GAGCTC 1 cut(s) 663
SaqAI TTAA 5 cut(s) 287, 438, 504, 576, 729
SatI GCNGC 3 cut(s) 62, 455, 584
Sau3AI GATC 4 cut(s) 66, 130, 230, 633
Sau96I GGNCC 1 cut(s) 16
ScaI AGTACT 1 cut(s) 95
ScrFI CCNGG 1 cut(s) 630
SduI GDGCHC 1 cut(s) 663
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 1 cut(s) 651
SfuI TTCGAA 1 cut(s) 136
SinI GGWCC 1 cut(s) 16
SpeI ACTAGT 1 cut(s) 323
Sse9I AATT 6 cut(s) 41, 50, 330, 474, 515, 698
SsiI CCGC 2 cut(s) 14, 295
SspMI CTAG 2 cut(s) 261, 324
SstI GAGCTC 1 cut(s) 663
StyD4I CCNGG 1 cut(s) 628
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 4 cut(s) 154, 655, 686, 766
TaqI TCGA 5 cut(s) 27, 69, 136, 275, 555
TaqII GACCGA 1 cut(s) 114
TasI AATT 6 cut(s) 41, 50, 330, 474, 515, 698
TatI WGTACW 2 cut(s) 93, 681
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 5 cut(s) 287, 438, 504, 576, 729
Tru9I TTAA 5 cut(s) 287, 438, 504, 576, 729
TscAI CASTG 1 cut(s) 660
TseI GCWGC 3 cut(s) 61, 454, 583
TspDTI ATGAA 4 cut(s) 17, 395, 529, 728
TspGWI ACGGA 1 cut(s) 556
TspRI CASTG 1 cut(s) 660
Tth111I GACNNNGTC 2 cut(s) 493, 791
Van91I CCANNNNNTGG 1 cut(s) 342
VpaK11BI GGWCC 1 cut(s) 16
XapI RAATTY 1 cut(s) 515
XceI RCATGY 1 cut(s) 679
XmnI GAANNNNTTC 1 cut(s) 447
XspI CTAG 2 cut(s) 261, 324
ZrmI AGTACT 1 cut(s) 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.