AT3G53305

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
19763618 .. 19765268
1651 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G53305.1

Sequence Viewer

Length: 1017 bp
ATGCTTCTCCGTTTTGGAGTTGTCCCTGTGGTCGTGTTCTCTTCCAAGGAAGCAGCTAAAGAAGTTCTCAAAACTCATGACTTAGATACTTGCACCCGACCTAAGCTAGTCGCGAATGGGTTGTTTTCTCGCAACTTCAAAGACATTGGTTTCACTCAGTACGGTGAAGACTGGCGAGAGATGAAAAAGCTGGTGGGGCTTGAGCTCTTTAGTCCGAAAAAGCATAAGTCTTTCAGGTATATCAGAGAGGAAGAAGGTGACTTGCTGGTCAAGAAAATATCAAATTCCGCTCAAACACAGACCCTAATAGATTTGAGAAAAGCCTCTTTCTCCTTCACCGCCGGTACAATCTTCAGACTAGCCTTTGGACAGAACTTCCACCAGTGCGATTTCATGGATATGGACAGACTTGAAGAGCTGGTGCTAGAGGCGGAAACCAACGGATGCATCTTGGCACTCACAGACTTCTTACCCACGGGTCTTGGTTGGCTTGTAGACCGGATATCTGGATGTGGTTTTGGCGGGAGTGAATGCGGGAACAATCACAATGATCTACAAAAAGTCGAGTACTTGAATATGGTGATCAAAGAAACATTCAGATTACATCCACCATCTCCCCTCTTGCTACCAAGAGAAACAATGTCCGATATCGAGATTCAAGGCTACCACATTCCCAAGAACGCCCTTATCAGGATCAACACTTACACTATAGGACGTGATCTGAAATGTTGGTCTAACCCTGAGAGGTTTTTGAATACCTCAATCAACTACAAAGGTCAGGATTACAAGCTCTTGCCCTTCGGAGCAGGCCGTAGAAGCTGTCCTGGTATGAACTTGGGAATCACCATTCTTGAGCTAGGCCTTCTTAACATTCTTTACTTCTTTGATTGGAGTTTTCCCAATGGAATGACCATTGAAGACATTGACATGGAGGAAAACGGAGCTTTAAACAAAACCCTTGAGCTCATACCAACTCTTCCATCAGCACTGTCAGATGGATCATCTGGATGGAGATGA

Protein Analysis

338

Amino Acids

38.27

Weight (kDa)

5.94

Isoelectric Point (pI)

39.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 131 3.5e-13 Cytochrome P450
p450 PF00067 180 - 319 9.7e-42 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AccBSI CCGCTC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 495
AccII CGCG 1 cut(s) 113
AciI CCGC 5 cut(s) 288, 339, 431, 522, 534
AclWI GGATC 2 cut(s) 701, 1006
AcsI RAATTY 1 cut(s) 283
AcuI CTGAAG 1 cut(s) 337
AfaI GTAC 3 cut(s) 161, 346, 569
AfiI CCNNNNNNNGG 1 cut(s) 690
AgsI TTSAA 6 cut(s) 139, 413, 574, 659, 754, 917
AjiI CACGTC 1 cut(s) 716
AjnI CCWGG 1 cut(s) 823
Alw21I GWGCWC 2 cut(s) 207, 966
AlwI GGATC 2 cut(s) 701, 1006
AoxI GGCC 2 cut(s) 808, 859
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 1 cut(s) 283
AsuHPI GGTGA 5 cut(s) 176, 269, 328, 592, 835
BanII GRGCYC 2 cut(s) 207, 966
BbsI GAAGAC 2 cut(s) 174, 924
Bbv12I GWGCWC 2 cut(s) 207, 966
BbvI GCAGC 1 cut(s) 65
BccI CCATC 4 cut(s) 619, 988, 989, 1002
BceAI ACGGC 1 cut(s) 795
BciT130I CCWGG 1 cut(s) 825
BclI TGATCA 1 cut(s) 582
BfaI CTAG 4 cut(s) 107, 359, 425, 857
BfmI CTRYAG 1 cut(s) 708
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmcAI AGTACT 1 cut(s) 569
Bme1390I CCNGG 1 cut(s) 825
BmgBI CACGTC 1 cut(s) 716
BmrFI CCNGG 1 cut(s) 825
BmsI GCATC 2 cut(s) 434, 456
BpiI GAAGAC 2 cut(s) 174, 924
Bpu10I CCTNAGC 1 cut(s) 102
BpuEI CTTGAG 3 cut(s) 221, 872, 980
BsaJI CCNNGG 2 cut(s) 45, 474
BsaWI WCCGGW 1 cut(s) 498
Bsc4I CCNNNNNNNGG 1 cut(s) 690
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 176, 382
BseBI CCWGG 1 cut(s) 825
BseDI CCNNGG 2 cut(s) 45, 474
BseGI GGATG 4 cut(s) 449, 515, 604, 1013
BseLI CCNNNNNNNGG 1 cut(s) 690
BseMII CTCAG 2 cut(s) 170, 732
BseNI ACTGG 2 cut(s) 176, 382
BseXI GCAGC 1 cut(s) 65
Bsh1236I CGCG 1 cut(s) 113
BshFI GGCC 2 cut(s) 810, 861
BsiHKAI GWGCWC 2 cut(s) 207, 966
BsiSI CCGG 2 cut(s) 342, 499
BslFI GGGAC 1 cut(s) 8
BslI CCNNNNNNNGG 1 cut(s) 690
BsmFI GGGAC 1 cut(s) 8
BsmI GAATGC 1 cut(s) 536
BsnI GGCC 2 cut(s) 810, 861
Bsp1286I GDGCHC 2 cut(s) 207, 966
Bsp143I GATC 5 cut(s) 550, 582, 693, 718, 998
Bsp68I TCGCGA 1 cut(s) 113
BspACI CCGC 5 cut(s) 288, 339, 431, 522, 534
BspANI GGCC 2 cut(s) 810, 861
BspCNI CTCAG 2 cut(s) 169, 733
BspFNI CGCG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 76
BspPI GGATC 2 cut(s) 701, 1006
BspQI GCTCTTC 1 cut(s) 408
BsrBI CCGCTC 1 cut(s) 290
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 176, 382
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 2 cut(s) 45, 474
BssMI GATC 5 cut(s) 550, 582, 693, 718, 998
BssT1I CCWWGG 1 cut(s) 45
Bst2UI CCWGG 1 cut(s) 825
Bst4CI ACNGT 2 cut(s) 164, 990
Bst6I CTCTTC 3 cut(s) 46, 408, 981
BstC8I GCNNGC 1 cut(s) 808
BstDEI CTNAG 4 cut(s) 82, 102, 156, 741
BstDSI CCRYGG 1 cut(s) 474
BstF5I GGATG 4 cut(s) 449, 515, 604, 1013
BstFNI CGCG 1 cut(s) 113
BstKTI GATC 5 cut(s) 553, 585, 696, 721, 1001
BstMBI GATC 5 cut(s) 550, 582, 693, 718, 998
BstMWI GCNNNNNNNGC 2 cut(s) 196, 816
BstNI CCWGG 1 cut(s) 825
BstSCI CCNGG 1 cut(s) 823
BstSFI CTRYAG 1 cut(s) 708
BstUI CGCG 1 cut(s) 113
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 2 cut(s) 174, 924
BsuRI GGCC 2 cut(s) 810, 861
BtgI CCRYGG 1 cut(s) 474
BtrI CACGTC 1 cut(s) 716
BtsCI GGATG 4 cut(s) 449, 515, 604, 1013
BtsIMutI CAGTG 2 cut(s) 389, 986
BtuMI TCGCGA 1 cut(s) 113
Cac8I GCNNGC 1 cut(s) 808
CciI TCATGA 1 cut(s) 76
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 3 cut(s) 160, 345, 568
CspCI CAANNNNNGTGG 2 cut(s) 463, 498
CviAII CATG 3 cut(s) 77, 394, 928
CviQI GTAC 3 cut(s) 160, 345, 568
DdeI CTNAG 4 cut(s) 82, 102, 156, 741
DpnI GATC 5 cut(s) 552, 584, 695, 720, 1000
DpnII GATC 5 cut(s) 550, 582, 693, 718, 998
DraI TTTAAA 1 cut(s) 948
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eam1104I CTCTTC 3 cut(s) 46, 408, 981
EarI CTCTTC 3 cut(s) 46, 408, 981
EciI GGCGGA 1 cut(s) 446
Ecl136II GAGCTC 2 cut(s) 205, 964
Eco130I CCWWGG 1 cut(s) 45
Eco147I AGGCCT 1 cut(s) 861
Eco24I GRGCYC 2 cut(s) 207, 966
Eco32I GATATC 2 cut(s) 504, 649
Eco53kI GAGCTC 2 cut(s) 205, 964
Eco57I CTGAAG 1 cut(s) 337
EcoICRI GAGCTC 2 cut(s) 205, 964
EcoRII CCWGG 1 cut(s) 823
EcoRV GATATC 2 cut(s) 504, 649
EcoT14I CCWWGG 1 cut(s) 45
EcoT22I ATGCAT 1 cut(s) 449
EcoT38I GRGCYC 2 cut(s) 207, 966
ErhI CCWWGG 1 cut(s) 45
FaeI CATG 3 cut(s) 80, 397, 931
FaqI GGGAC 1 cut(s) 8
FatI CATG 3 cut(s) 76, 393, 927
FauI CCCGC 2 cut(s) 515, 527
FbaI TGATCA 1 cut(s) 582
FblI GTMKAC 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 3 cut(s) 456, 522, 591
FriOI GRGCYC 2 cut(s) 207, 966
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 4 cut(s) 107, 359, 425, 857
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 2 cut(s) 810, 861
HapII CCGG 2 cut(s) 342, 499
Hin1II CATG 3 cut(s) 80, 397, 931
HinfI GANTC 2 cut(s) 655, 840
HpaII CCGG 2 cut(s) 342, 499
HphI GGTGA 5 cut(s) 176, 269, 328, 592, 835
Hpy166II GTNNAC 1 cut(s) 496
Hpy188I TCNGA 8 cut(s) 216, 245, 356, 599, 646, 723, 803, 994
Hpy188III TCNNGA 9 cut(s) 77, 112, 271, 507, 652, 691, 779, 851, 1005
Hpy8I GTNNAC 1 cut(s) 496
HpyAV CCTTC 4 cut(s) 248, 343, 808, 872
HpyCH4III ACNGT 2 cut(s) 164, 990
HpyCH4IV ACGT 1 cut(s) 715
HpyCH4V TGCA 2 cut(s) 93, 447
HpyF10VI GCNNNNNNNGC 2 cut(s) 196, 816
HpyF3I CTNAG 4 cut(s) 82, 102, 156, 741
HpySE526I ACGT 1 cut(s) 715
Hsp92II CATG 3 cut(s) 80, 397, 931
Ksp22I TGATCA 1 cut(s) 582
Kzo9I GATC 5 cut(s) 550, 582, 693, 718, 998
LguI GCTCTTC 1 cut(s) 408
LmnI GCTCC 2 cut(s) 803, 941
Lsp1109I GCAGC 1 cut(s) 65
LweI GCATC 2 cut(s) 434, 456
MaeI CTAG 4 cut(s) 107, 359, 425, 857
MaeII ACGT 1 cut(s) 715
MaeIII GTNAC 1 cut(s) 257
MalI GATC 5 cut(s) 552, 584, 695, 720, 1000
MbiI CCGCTC 1 cut(s) 290
MboI GATC 5 cut(s) 550, 582, 693, 718, 998
MboII GAAGA 7 cut(s) 33, 179, 263, 343, 425, 929, 968
MhlI GDGCHC 2 cut(s) 207, 966
MluCI AATT 1 cut(s) 283
MnlI CCTC 7 cut(s) 241, 334, 421, 629, 738, 769, 925
Mph1103I ATGCAT 1 cut(s) 449
MseI TTAA 2 cut(s) 867, 947
MslI CAYNNNNRTG 3 cut(s) 398, 926, 1006
MspI CCGG 2 cut(s) 342, 499
MspR9I CCNGG 1 cut(s) 825
Mva1269I GAATGC 1 cut(s) 536
MvaI CCWGG 1 cut(s) 825
MvnI CGCG 1 cut(s) 113
MwoI GCNNNNNNNGC 2 cut(s) 196, 816
NdeII GATC 5 cut(s) 550, 582, 693, 718, 998
NlaIII CATG 3 cut(s) 80, 397, 931
NmuCI GTSAC 1 cut(s) 257
NruI TCGCGA 1 cut(s) 113
NsiI ATGCAT 1 cut(s) 449
PagI TCATGA 1 cut(s) 76
PceI AGGCCT 1 cut(s) 861
PciSI GCTCTTC 1 cut(s) 408
PctI GAATGC 1 cut(s) 536
PfeI GAWTC 2 cut(s) 655, 840
PkrI GCNGC 1 cut(s) 55
Psp124BI GAGCTC 2 cut(s) 207, 966
Psp6I CCWGG 1 cut(s) 823
PspGI CCWGG 1 cut(s) 823
RruI TCGCGA 1 cut(s) 113
RsaI GTAC 3 cut(s) 161, 346, 569
RsaNI GTAC 3 cut(s) 160, 345, 568
RseI CAYNNNNRTG 3 cut(s) 398, 926, 1006
SacI GAGCTC 2 cut(s) 207, 966
SapI GCTCTTC 1 cut(s) 408
SaqAI TTAA 2 cut(s) 867, 947
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 5 cut(s) 550, 582, 693, 718, 998
ScaI AGTACT 1 cut(s) 569
ScrFI CCNGG 1 cut(s) 825
SduI GDGCHC 2 cut(s) 207, 966
SfaNI GCATC 2 cut(s) 434, 456
SfcI CTRYAG 1 cut(s) 708
SmiMI CAYNNNNRTG 3 cut(s) 398, 926, 1006
SmlI CTYRAG 3 cut(s) 200, 851, 959
SmoI CTYRAG 3 cut(s) 200, 851, 959
Sse9I AATT 1 cut(s) 283
SseBI AGGCCT 1 cut(s) 861
SsiI CCGC 5 cut(s) 288, 339, 431, 522, 534
SspMI CTAG 4 cut(s) 107, 359, 425, 857
SstI GAGCTC 2 cut(s) 207, 966
StuI AGGCCT 1 cut(s) 861
StyD4I CCNGG 1 cut(s) 823
StyI CCWWGG 1 cut(s) 45
TaaI ACNGT 2 cut(s) 164, 990
TaiI ACGT 1 cut(s) 718
TaqI TCGA 2 cut(s) 564, 651
TasI AATT 1 cut(s) 283
TatI WGTACW 1 cut(s) 567
TfiI GAWTC 2 cut(s) 655, 840
Tru1I TTAA 2 cut(s) 867, 947
Tru9I TTAA 2 cut(s) 867, 947
TscAI CASTG 2 cut(s) 389, 993
TseFI GTSAC 1 cut(s) 257
TseI GCWGC 1 cut(s) 53
Tsp45I GTSAC 1 cut(s) 257
TspDTI ATGAA 3 cut(s) 197, 382, 845
TspGWI ACGGA 2 cut(s) 456, 954
TspRI CASTG 2 cut(s) 389, 993
XapI RAATTY 1 cut(s) 283
XmiI GTMKAC 1 cut(s) 495
XspI CTAG 4 cut(s) 107, 359, 425, 857
ZrmI AGTACT 1 cut(s) 569
Zsp2I ATGCAT 1 cut(s) 449
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.