Rroxscaffold_1G00053390

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000354
Physical Location & Seq
Reverse (-)
74270264 .. 74272311
2048 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00053390.1

Sequence Viewer

Length: 789 bp
ATGCTCTTACAAGTCGGTTGCATACCGACTCTCATAATCTCCTCAACCGAAGCAGCTCAACAGGTCTTGAAAGATAATGACATCCTCTGCTATAATAGACCCGCCTCCACGGGGTCTCAAAAAATCACTTACAATTATCTAGACATGGAATTTGAGCCATACAATAAGTATTGGCGAGAGATAAGAAAGATATGTGTGCTTGAGCTTTTCGGTGTGCAAAGAGTGCACTCATATCTGTCCATTAGGGAAGACGAAGTGGCTAAGATGATTGATTCAATCTCTAATGACTCCGCTTCTTCTTCTTCTTCTATTCATCTTATCGACAAGTTGTTTGCTCTCATGGGAAGCATAATATTCAGGATTGTGATTGATGATCATCTCAAGCATGGGAAGACACAACAAGAGCATGAAGACATAGTTGATGTACTAATTAAATTTGCAAAGGACACTGGTTCCGGAACTACTCGGCTTGGTCATAATAACATCAAGGCTGTCATCATGATTTCCATAAGTGGAATAGATACTGGTGCAATCACCATGGAGTGGACGATGGTTGAGCTTGCTAGGAAGCCGAGACTTATGAAGAAAGCACAAGAAGAAGTTAGAAACCTCATAAGAAATAAAGGGAAAGTCTTTGAAAGTGATATCGAACAACTTCAATATCTCAAGATGATTGTGAATGTAGATACCTCTACTAGCAAGGCTATTTTTTACATCACCAAGCATAAGGATCTATATGGGGACGACGATGGTGGAGCTCGGCCTTGCAAGCCTGCTCTACTGCTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

262

Amino Acids

29.66

Weight (kDa)

6.66

Isoelectric Point (pI)

28.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 3 - 128 3.8e-07 Cytochrome P450
p450 PF00067 133 - 227 5.7e-14 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 543
AccIII TCCGGA 1 cut(s) 455
AciI CCGC 2 cut(s) 102, 291
AclWI GGATC 1 cut(s) 738
AcsI RAATTY 2 cut(s) 149, 434
AfaI GTAC 1 cut(s) 426
AfiI CCNNNNNNNGG 2 cut(s) 111, 543
AgsI TTSAA 4 cut(s) 70, 276, 638, 659
AluBI AGCT 4 cut(s) 56, 205, 559, 758
AluI AGCT 4 cut(s) 56, 205, 559, 758
Alw21I GWGCWC 2 cut(s) 228, 760
Alw26I GTCTC 2 cut(s) 120, 568
Alw44I GTGCAC 1 cut(s) 224
AlwI GGATC 1 cut(s) 738
Aor13HI TCCGGA 1 cut(s) 455
AoxI GGCC 1 cut(s) 761
ApaLI GTGCAC 1 cut(s) 224
ApeKI GCWGC 1 cut(s) 53
ApoI RAATTY 2 cut(s) 149, 434
ArsI GACNNNNNNTTYG 4 cut(s) 134, 166, 314, 346
Asp700I GAANNNNTTC 1 cut(s) 654
AsuHPI GGTGA 2 cut(s) 526, 709
BaeGI GKGCMC 1 cut(s) 228
BanII GRGCYC 1 cut(s) 760
BbsI GAAGAC 3 cut(s) 255, 398, 417
Bbv12I GWGCWC 2 cut(s) 228, 760
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 544, 743
BclI TGATCA 1 cut(s) 373
BcoDI GTCTC 2 cut(s) 120, 568
BfaI CTAG 3 cut(s) 140, 564, 696
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 454
BpiI GAAGAC 3 cut(s) 255, 398, 417
BpuEI CTTGAG 3 cut(s) 221, 365, 650
BsaBI GATNNNNATC 1 cut(s) 375
BsaI GGTCTC 1 cut(s) 120
BsaJI CCNNGG 2 cut(s) 108, 537
BsaWI WCCGGW 1 cut(s) 455
Bsc4I CCNNNNNNNGG 2 cut(s) 111, 543
Bse1I ACTGG 2 cut(s) 454, 529
Bse8I GATNNNNATC 1 cut(s) 375
BseAI TCCGGA 1 cut(s) 455
BseDI CCNNGG 2 cut(s) 108, 537
BseGI GGATG 1 cut(s) 81
BseJI GATNNNNATC 1 cut(s) 375
BseLI CCNNNNNNNGG 2 cut(s) 111, 543
BseNI ACTGG 2 cut(s) 454, 529
BseRI GAGGAG 1 cut(s) 31
BseSI GKGCMC 1 cut(s) 228
BseXI GCAGC 1 cut(s) 65
BshFI GGCC 1 cut(s) 763
BsiHKAI GWGCWC 2 cut(s) 228, 760
BsiSI CCGG 1 cut(s) 456
BslFI GGGAC 1 cut(s) 755
BslI CCNNNNNNNGG 2 cut(s) 111, 543
BsmAI GTCTC 2 cut(s) 120, 568
BsmFI GGGAC 1 cut(s) 755
BsnI GGCC 1 cut(s) 763
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 2 cut(s) 228, 760
Bsp13I TCCGGA 1 cut(s) 455
Bsp143I GATC 2 cut(s) 373, 730
Bsp19I CCATGG 1 cut(s) 537
BspACI CCGC 2 cut(s) 102, 291
BspANI GGCC 1 cut(s) 763
BspEI TCCGGA 1 cut(s) 455
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 1 cut(s) 454
BspPI GGATC 1 cut(s) 738
BspTNI GGTCTC 1 cut(s) 120
BsrI ACTGG 2 cut(s) 454, 529
BssECI CCNNGG 2 cut(s) 108, 537
BssMI GATC 2 cut(s) 373, 730
BssT1I CCWWGG 1 cut(s) 537
BstAPI GCANNNNNTGC 1 cut(s) 223
BstC8I GCNNGC 3 cut(s) 561, 770, 774
BstDEI CTNAG 1 cut(s) 261
BstDSI CCRYGG 2 cut(s) 108, 537
BstF5I GGATG 1 cut(s) 81
BstKTI GATC 2 cut(s) 376, 733
BstMAI GTCTC 2 cut(s) 120, 568
BstMBI GATC 2 cut(s) 373, 730
BstMWI GCNNNNNNNGC 2 cut(s) 223, 769
BstSLI GKGCMC 1 cut(s) 228
BstV1I GCAGC 1 cut(s) 65
BstV2I GAAGAC 3 cut(s) 255, 398, 417
BstX2I RGATCY 1 cut(s) 730
BstYI RGATCY 1 cut(s) 730
BsuRI GGCC 1 cut(s) 763
BtgI CCRYGG 2 cut(s) 108, 537
BtsCI GGATG 1 cut(s) 81
BtsIMutI CAGTG 1 cut(s) 447
Cac8I GCNNGC 3 cut(s) 561, 770, 774
CciI TCATGA 1 cut(s) 498
Csp6I GTAC 1 cut(s) 425
CviAII CATG 6 cut(s) 145, 340, 386, 407, 499, 538
CviQI GTAC 1 cut(s) 425
DdeI CTNAG 1 cut(s) 261
DpnI GATC 2 cut(s) 375, 732
DpnII GATC 2 cut(s) 373, 730
Ecl136II GAGCTC 1 cut(s) 758
Eco130I CCWWGG 1 cut(s) 537
Eco24I GRGCYC 1 cut(s) 760
Eco31I GGTCTC 1 cut(s) 120
Eco32I GATATC 1 cut(s) 646
Eco53kI GAGCTC 1 cut(s) 758
EcoICRI GAGCTC 1 cut(s) 758
EcoRV GATATC 1 cut(s) 646
EcoT14I CCWWGG 1 cut(s) 537
EcoT38I GRGCYC 1 cut(s) 760
ErhI CCWWGG 1 cut(s) 537
FaeI CATG 6 cut(s) 148, 343, 389, 410, 502, 541
FaqI GGGAC 1 cut(s) 755
FatI CATG 6 cut(s) 144, 339, 385, 406, 498, 537
FauI CCCGC 1 cut(s) 109
FbaI TGATCA 1 cut(s) 373
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 68
FriOI GRGCYC 1 cut(s) 760
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 3 cut(s) 140, 564, 696
GluI GCNGC 1 cut(s) 54
HaeIII GGCC 1 cut(s) 763
HapII CCGG 1 cut(s) 456
Hin1II CATG 6 cut(s) 148, 343, 389, 410, 502, 541
HinfI GANTC 3 cut(s) 28, 272, 287
HpaII CCGG 1 cut(s) 456
HphI GGTGA 2 cut(s) 526, 709
Hpy166II GTNNAC 2 cut(s) 226, 546
Hpy188III TCNNGA 6 cut(s) 67, 140, 358, 456, 499, 667
Hpy8I GTNNAC 2 cut(s) 226, 546
Hpy99I CGWCG 1 cut(s) 749
HpyCH4V TGCA 6 cut(s) 21, 217, 226, 440, 530, 768
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 769
HpyF3I CTNAG 1 cut(s) 261
Hsp92II CATG 6 cut(s) 148, 343, 389, 410, 502, 541
Kpn2I TCCGGA 1 cut(s) 455
Ksp22I TGATCA 1 cut(s) 373
Kzo9I GATC 2 cut(s) 373, 730
LmnI GCTCC 1 cut(s) 755
LpnPI CCDG 5 cut(s) 47, 343, 435, 469, 510
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 3 cut(s) 140, 564, 696
MalI GATC 2 cut(s) 375, 732
MboI GATC 2 cut(s) 373, 730
MboII GAAGA 9 cut(s) 260, 288, 291, 294, 297, 403, 422, 595, 608
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 2 cut(s) 228, 760
MluCI AATT 4 cut(s) 133, 149, 429, 434
MlyI GAGTC 2 cut(s) 22, 281
MnlI CCTC 5 cut(s) 52, 95, 115, 620, 700
MroI TCCGGA 1 cut(s) 455
MroXI GAANNNNTTC 1 cut(s) 654
MseI TTAA 2 cut(s) 432, 787
MspI CCGG 1 cut(s) 456
MwoI GCNNNNNNNGC 2 cut(s) 223, 769
NcoI CCATGG 1 cut(s) 537
NdeII GATC 2 cut(s) 373, 730
NlaIII CATG 6 cut(s) 148, 343, 389, 410, 502, 541
NlaIV GGNNCC 1 cut(s) 454
NmeAIII GCCGAG 3 cut(s) 445, 597, 739
PagI TCATGA 1 cut(s) 498
PdmI GAANNNNTTC 1 cut(s) 654
PfeI GAWTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 543
PkrI GCNGC 1 cut(s) 55
PleI GAGTC 2 cut(s) 22, 281
PpsI GAGTC 2 cut(s) 22, 281
Psp124BI GAGCTC 1 cut(s) 760
PspN4I GGNNCC 1 cut(s) 454
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 1 cut(s) 426
RsaNI GTAC 1 cut(s) 425
SacI GAGCTC 1 cut(s) 760
SaqAI TTAA 2 cut(s) 432, 787
SatI GCNGC 1 cut(s) 54
Sau3AI GATC 2 cut(s) 373, 730
SchI GAGTC 2 cut(s) 22, 281
SduI GDGCHC 2 cut(s) 228, 760
SetI ASST 7 cut(s) 58, 66, 207, 561, 612, 692, 760
SmlI CTYRAG 3 cut(s) 200, 380, 665
SmoI CTYRAG 3 cut(s) 200, 380, 665
Sse9I AATT 4 cut(s) 133, 149, 429, 434
SsiI CCGC 2 cut(s) 102, 291
SspI AATATT 1 cut(s) 354
SspMI CTAG 3 cut(s) 140, 564, 696
SstI GAGCTC 1 cut(s) 760
StyI CCWWGG 1 cut(s) 537
TaqI TCGA 2 cut(s) 321, 648
TasI AATT 4 cut(s) 133, 149, 429, 434
TatI WGTACW 1 cut(s) 424
TfiI GAWTC 1 cut(s) 272
Tru1I TTAA 2 cut(s) 432, 787
Tru9I TTAA 2 cut(s) 432, 787
TscAI CASTG 1 cut(s) 454
TseI GCWGC 1 cut(s) 53
TspDTI ATGAA 3 cut(s) 302, 423, 596
TspRI CASTG 1 cut(s) 454
Van91I CCANNNNNTGG 1 cut(s) 543
VneI GTGCAC 1 cut(s) 224
XapI RAATTY 2 cut(s) 149, 434
XbaI TCTAGA 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 654
XspI CTAG 3 cut(s) 140, 564, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.