RchiOBHm_Chr4g0419571

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000354
Physical Location & Seq
Reverse (-)
45044415 .. 45046662
2248 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38945

Sequence Viewer

Length: 1482 bp
ATGGCTGACAACACCGTCCTACTAATCTTATGGATTCCATTTCTCCTCCTTCTCCCTTTACTACTGCTTTTACTGAGAAAGCAGATCAATAAGCCACAAAAGCACTTTCCACCAAGCCCTCCTAAGCTTCCCATTATAGGCAACCTCCACCAGTTTACTCAATCTGGTTCATCACTTCATCAAAACCTATGGAGACTATCACAGAAATACGGACCACTCATGCTCTTACACATGGGTAGCAGACCGACCCTCATAATCTCATCAGCTGAAGCAGCAAAACAGACCTTGAAAGATAATGATCTCCACTGTTGCAGTAGACCGACCTCCTCGGGATCTCGCAGACTCACATTTAACCATCTAGACATAGCATTTTCGCCTTACAGTGAATATTGGCGAGAGATAAGAAAGATATGTGTGCTTGAGATTTTCAGTGCGAAAAGGGTTCAGTCGTATAGGTCTGTTAGAGAAGAAGAAGTCGTGAAGATGATTGATTCAATCTCTGACGCATCAGCTTCATCTTCTCCTGTTAACCTTACTGAGAAGTTGTTTGCTCTCATGGGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGAGCGATTTGGAGCATGAAAGATTTCTTCGAGTGGTTCATGATCTTACAGGCTTCTCATCAGGCGCAGTTGATTTCTTTCCTCCATGTATCGGGTGGATCATAGACAGGGTCTCCGGTAAACATAGAGAGTTTGACAGACTTTCCAGGGAAGTTCATCGCTTTTTTCAGCAGGCGATTGATGATCATCTCAGGCCTGGGAGGACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGGTGAAGAAGCAAACTGGGATTGGAGCTGCTCAGATTGGTCATAAGAACATCAAGGCAGTTCTCCTGGATATGTTTCTAGGAGGAGTAGACACCACTGCAACTACCATGGTTTGGGCAATGGCCGAGCTGGCTACGAATACAAGAGTGATGAAGAAAGCACAGGAAGAAATTAGAAACTGCATTGGAAATAAAGGAAAAGCCACTGAAATTGATACAGAGCAGCTGCAGTACCTCAAGATGATAGTGAAAGAAACACTTCGACTACATCCACCTCCCCTACTTCTTCCAAGAGAAACCATGTCCCACTTCAAAGTCCTTGGCTATGATGTTGACCCCAAAACAACAGTCCTTGTTAATGATTGGGCAATCTCACGAGATCCAGAATTTGGAACGACCCAGAAAAGGCAACACTTTGACTTCTTGCCATTTGGAGCTGGTCGAAGAATTTGTCCAGGGATTTATATGGCAGCGACGACAATGGAGCTTGCACTTGCCAAATTGTTGTGCTGCTTTGATTGGAAAGTGCCTGATGGAATGAATGAGGAAGATATGAAGATGGAAGAAACAACCCATGGGGTAGTTATTTCCTTGAAAAATTCTCTCAACCTTATCCCTGTGAGATATTCTTATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

493

Amino Acids

56.06

Weight (kDa)

8.86

Isoelectric Point (pI)

44.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 37 - 475 1.1e-86 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 14
AccB7I CCANNNNNTGG 2 cut(s) 960, 1235
AccI GTMKAC 2 cut(s) 316, 936
AclWI GGATC 3 cut(s) 340, 707, 1220
AcoI YGGCCR 1 cut(s) 969
AcsI RAATTY 3 cut(s) 1232, 1293, 1444
AcuI CTGAAG 1 cut(s) 288
AfaI GTAC 1 cut(s) 1079
AfiI CCNNNNNNNGG 5 cut(s) 137, 692, 960, 1235, 1251
AgsI TTSAA 4 cut(s) 289, 495, 1159, 1441
AjnI CCWGG 4 cut(s) 746, 796, 912, 1300
AluBI AGCT 8 cut(s) 127, 266, 512, 875, 976, 1072, 1283, 1333
AluI AGCT 8 cut(s) 127, 266, 512, 875, 976, 1072, 1283, 1333
Alw26I GTCTC 2 cut(s) 187, 718
AlwI GGATC 3 cut(s) 340, 707, 1220
Ama87I CYCGRG 1 cut(s) 328
AoxI GGCC 2 cut(s) 794, 969
ApeKI GCWGC 7 cut(s) 272, 838, 875, 1069, 1072, 1316, 1356
ApoI RAATTY 3 cut(s) 1232, 1293, 1444
ArsI GACNNNNNNTTYG 4 cut(s) 1179, 1211, 1282, 1314
Asp700I GAANNNNTTC 2 cut(s) 624, 1104
AspLEI GCGC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 1 cut(s) 862
AvaI CYCGRG 1 cut(s) 328
AvaII GGWCC 1 cut(s) 212
BauI CACGAG 1 cut(s) 1221
BbvI GCAGC 7 cut(s) 284, 825, 862, 1059, 1081, 1328, 1343
BccI CCATC 3 cut(s) 363, 1373, 1399
BciT130I CCWGG 4 cut(s) 748, 798, 914, 1302
BclI TGATCA 1 cut(s) 784
BcoDI GTCTC 2 cut(s) 187, 718
BfaI CTAG 2 cut(s) 359, 926
BfmI CTRYAG 1 cut(s) 1073
BglI GCCNNNNNGGC 1 cut(s) 977
BisI GCNGC 7 cut(s) 273, 839, 876, 1070, 1073, 1317, 1357
BlsI GCNGC 7 cut(s) 274, 840, 877, 1071, 1074, 1318, 1358
Bme1390I CCNGG 4 cut(s) 748, 798, 914, 1302
Bme18I GGWCC 1 cut(s) 212
BmeT110I CYCGRG 1 cut(s) 328
BmgT120I GGNCC 1 cut(s) 212
BmrFI CCNGG 4 cut(s) 748, 798, 914, 1302
BmrI ACTGGG 1 cut(s) 873
BmsI GCATC 1 cut(s) 515
BmuI ACTGGG 1 cut(s) 873
Bpu10I CCTNAGC 1 cut(s) 123
BpuEI CTTGAG 2 cut(s) 440, 1067
BsaBI GATNNNNATC 2 cut(s) 297, 786
BsaI GGTCTC 1 cut(s) 718
BsaJI CCNNGG 8 cut(s) 327, 598, 747, 797, 954, 1165, 1301, 1420
BsaWI WCCGGW 1 cut(s) 716
BsaXI ACNNNNNCTCC 2 cut(s) 698, 728
Bsc4I CCNNNNNNNGG 5 cut(s) 137, 692, 960, 1235, 1251
Bse1I ACTGG 2 cut(s) 151, 868
Bse3DI GCAATG 1 cut(s) 972
Bse8I GATNNNNATC 2 cut(s) 297, 786
BseBI CCWGG 4 cut(s) 748, 798, 914, 1302
BseDI CCNNGG 8 cut(s) 327, 598, 747, 797, 954, 1165, 1301, 1420
BseGI GGATG 1 cut(s) 1114
BseJI GATNNNNATC 2 cut(s) 297, 786
BseLI CCNNNNNNNGG 5 cut(s) 137, 692, 960, 1235, 1251
BseMI GCAATG 1 cut(s) 972
BseMII CTCAG 4 cut(s) 65, 528, 805, 893
BseNI ACTGG 2 cut(s) 151, 868
BseRI GAGGAG 3 cut(s) 35, 316, 945
BseXI GCAGC 7 cut(s) 284, 825, 862, 1059, 1081, 1328, 1343
BshFI GGCC 2 cut(s) 796, 971
BsiHKCI CYCGRG 1 cut(s) 328
BsiSI CCGG 1 cut(s) 717
BslFI GGGAC 2 cut(s) 601, 1135
BslI CCNNNNNNNGG 5 cut(s) 137, 692, 960, 1235, 1251
BsmAI GTCTC 2 cut(s) 187, 718
BsmFI GGGAC 2 cut(s) 601, 1135
BsnI GGCC 2 cut(s) 796, 971
Bso31I GGTCTC 1 cut(s) 718
BsoBI CYCGRG 1 cut(s) 328
Bsp143I GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
Bsp19I CCATGG 2 cut(s) 954, 1420
BspANI GGCC 2 cut(s) 796, 971
BspCNI CTCAG 4 cut(s) 66, 529, 804, 892
BspHI TCATGA 1 cut(s) 640
BspMAI CTGCAG 1 cut(s) 1077
BspPI GGATC 3 cut(s) 340, 707, 1220
BspTNI GGTCTC 1 cut(s) 718
BsrDI GCAATG 1 cut(s) 972
BsrI ACTGG 2 cut(s) 151, 868
BssECI CCNNGG 8 cut(s) 327, 598, 747, 797, 954, 1165, 1301, 1420
BssMI GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
BssSI CACGAG 1 cut(s) 1221
BssT1I CCWWGG 4 cut(s) 598, 954, 1165, 1420
Bst2BI CACGAG 1 cut(s) 1221
Bst2UI CCWGG 4 cut(s) 748, 798, 914, 1302
Bst4CI ACNGT 4 cut(s) 16, 308, 383, 1195
BstC8I GCNNGC 3 cut(s) 774, 978, 1335
BstDEI CTNAG 5 cut(s) 74, 123, 537, 791, 879
BstDSI CCRYGG 2 cut(s) 954, 1420
BstF5I GGATG 1 cut(s) 1114
BstHHI GCGC 1 cut(s) 668
BstKTI GATC 7 cut(s) 87, 301, 335, 646, 702, 787, 1228
BstMAI GTCTC 2 cut(s) 187, 718
BstMBI GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
BstMWI GCNNNNNNNGC 3 cut(s) 100, 272, 977
BstNI CCWGG 4 cut(s) 748, 798, 914, 1302
BstSCI CCNGG 4 cut(s) 746, 796, 912, 1300
BstSFI CTRYAG 1 cut(s) 1073
BstV1I GCAGC 7 cut(s) 284, 825, 862, 1059, 1081, 1328, 1343
BstX2I RGATCY 2 cut(s) 332, 1225
BstYI RGATCY 2 cut(s) 332, 1225
BsuRI GGCC 2 cut(s) 796, 971
BtgI CCRYGG 2 cut(s) 954, 1420
BtgZI GCGATG 1 cut(s) 743
BtsCI GGATG 1 cut(s) 1114
BtsI GCAGTG 1 cut(s) 942
BtsIMutI CAGTG 5 cut(s) 304, 388, 436, 942, 1050
Cac8I GCNNGC 3 cut(s) 774, 978, 1335
CciI TCATGA 1 cut(s) 640
CfoI GCGC 1 cut(s) 668
Cfr13I GGNCC 1 cut(s) 212
CseI GACGC 1 cut(s) 512
Csp6I GTAC 1 cut(s) 1078
CspCI CAANNNNNGTGG 2 cut(s) 1039, 1074
CviQI GTAC 1 cut(s) 1078
DdeI CTNAG 5 cut(s) 74, 123, 537, 791, 879
DpnI GATC 7 cut(s) 86, 300, 334, 645, 701, 786, 1227
DpnII GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
DrdI GACNNNNNNGTC 1 cut(s) 14
DseDI GACNNNNNNGTC 1 cut(s) 14
EaeI YGGCCR 1 cut(s) 969
Eco130I CCWWGG 4 cut(s) 598, 954, 1165, 1420
Eco147I AGGCCT 1 cut(s) 796
Eco31I GGTCTC 1 cut(s) 718
Eco47I GGWCC 1 cut(s) 212
Eco57I CTGAAG 1 cut(s) 288
Eco88I CYCGRG 1 cut(s) 328
EcoRII CCWGG 4 cut(s) 746, 796, 912, 1300
EcoT14I CCWWGG 4 cut(s) 598, 954, 1165, 1420
ErhI CCWWGG 4 cut(s) 598, 954, 1165, 1420
FalI AAGNNNNNCTT 2 cut(s) 1089, 1121
FaqI GGGAC 2 cut(s) 601, 1135
FbaI TGATCA 1 cut(s) 784
FblI GTMKAC 2 cut(s) 316, 936
Fnu4HI GCNGC 7 cut(s) 273, 839, 876, 1070, 1073, 1317, 1357
FokI GGATG 1 cut(s) 1101
Fsp4HI GCNGC 7 cut(s) 273, 839, 876, 1070, 1073, 1317, 1357
FspBI CTAG 2 cut(s) 359, 926
GlaI GCGC 1 cut(s) 667
GluI GCNGC 7 cut(s) 273, 839, 876, 1070, 1073, 1317, 1357
HaeIII GGCC 2 cut(s) 796, 971
HapII CCGG 1 cut(s) 717
HgaI GACGC 1 cut(s) 512
HhaI GCGC 1 cut(s) 668
Hin6I GCGC 1 cut(s) 666
HinP1I GCGC 1 cut(s) 666
HincII GTYRAC 2 cut(s) 529, 1180
HindII GTYRAC 2 cut(s) 529, 1180
HindIII AAGCTT 1 cut(s) 125
HinfI GANTC 3 cut(s) 34, 342, 491
HpaI GTTAAC 1 cut(s) 529
HpaII CCGG 1 cut(s) 717
HphI GGTGA 1 cut(s) 862
Hpy166II GTNNAC 6 cut(s) 156, 317, 529, 722, 937, 1180
Hpy188I TCNGA 2 cut(s) 502, 882
Hpy188III TCNNGA 9 cut(s) 330, 359, 478, 574, 586, 641, 1084, 1221, 1229
Hpy8I GTNNAC 6 cut(s) 156, 317, 529, 722, 937, 1180
Hpy99I CGWCG 1 cut(s) 1324
HpyAV CCTTC 1 cut(s) 59
HpyCH4III ACNGT 4 cut(s) 16, 308, 383, 1195
HpyCH4V TGCA 5 cut(s) 312, 947, 1029, 1075, 1337
HpyF10VI GCNNNNNNNGC 3 cut(s) 100, 272, 977
HpyF3I CTNAG 5 cut(s) 74, 123, 537, 791, 879
HspAI GCGC 1 cut(s) 666
Ksp22I TGATCA 1 cut(s) 784
KspAI GTTAAC 1 cut(s) 529
Kzo9I GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
LmnI GCTCC 6 cut(s) 603, 613, 814, 872, 1280, 1330
Lsp1109I GCAGC 7 cut(s) 284, 825, 862, 1059, 1081, 1328, 1343
LweI GCATC 1 cut(s) 515
MaeI CTAG 2 cut(s) 359, 926
MalI GATC 7 cut(s) 86, 300, 334, 645, 701, 786, 1227
MboI GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
MflI RGATCY 2 cut(s) 332, 1225
MluCI AATT 7 cut(s) 567, 1017, 1056, 1232, 1293, 1346, 1444
MlyI GAGTC 1 cut(s) 336
MroXI GAANNNNTTC 2 cut(s) 624, 1104
MseI TTAA 4 cut(s) 351, 528, 843, 1203
MspA1I CMGCKG 2 cut(s) 266, 1072
MspI CCGG 1 cut(s) 717
MspR9I CCNGG 4 cut(s) 748, 798, 914, 1302
MvaI CCWGG 4 cut(s) 748, 798, 914, 1302
MwoI GCNNNNNNNGC 3 cut(s) 100, 272, 977
NcoI CCATGG 2 cut(s) 954, 1420
NdeII GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
NmeAIII GCCGAG 1 cut(s) 997
PagI TCATGA 1 cut(s) 640
PceI AGGCCT 1 cut(s) 796
PdmI GAANNNNTTC 2 cut(s) 624, 1104
PfeI GAWTC 2 cut(s) 34, 491
PflFI GACNNNGTC 1 cut(s) 710
PflMI CCANNNNNTGG 2 cut(s) 960, 1235
PfoI TCCNGGA 1 cut(s) 912
PkrI GCNGC 7 cut(s) 274, 840, 877, 1071, 1074, 1318, 1358
PleI GAGTC 1 cut(s) 336
PpsI GAGTC 1 cut(s) 336
Psp6I CCWGG 4 cut(s) 746, 796, 912, 1300
PspGI CCWGG 4 cut(s) 746, 796, 912, 1300
PspPI GGNCC 1 cut(s) 212
PstI CTGCAG 1 cut(s) 1077
PsuI RGATCY 2 cut(s) 332, 1225
PsyI GACNNNGTC 1 cut(s) 710
PvuII CAGCTG 2 cut(s) 266, 1072
RsaI GTAC 1 cut(s) 1079
RsaNI GTAC 1 cut(s) 1078
SaqAI TTAA 4 cut(s) 351, 528, 843, 1203
SatI GCNGC 7 cut(s) 273, 839, 876, 1070, 1073, 1317, 1357
Sau3AI GATC 7 cut(s) 84, 298, 332, 643, 699, 784, 1225
Sau96I GGNCC 1 cut(s) 212
SchI GAGTC 1 cut(s) 336
ScrFI CCNGG 4 cut(s) 748, 798, 914, 1302
SfaNI GCATC 1 cut(s) 515
SfcI CTRYAG 1 cut(s) 1073
SinI GGWCC 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 419, 1082
SmoI CTYRAG 2 cut(s) 419, 1082
Sse9I AATT 7 cut(s) 567, 1017, 1056, 1232, 1293, 1346, 1444
SseBI AGGCCT 1 cut(s) 796
SspI AATATT 1 cut(s) 389
SspMI CTAG 2 cut(s) 359, 926
StuI AGGCCT 1 cut(s) 796
StyD4I CCNGG 4 cut(s) 746, 796, 912, 1300
StyI CCWWGG 4 cut(s) 598, 954, 1165, 1420
TaaI ACNGT 4 cut(s) 16, 308, 383, 1195
TaqI TCGA 3 cut(s) 631, 1108, 1288
TaqII GACCGA 2 cut(s) 259, 334
TasI AATT 7 cut(s) 567, 1017, 1056, 1232, 1293, 1346, 1444
TfiI GAWTC 2 cut(s) 34, 491
Tru1I TTAA 4 cut(s) 351, 528, 843, 1203
Tru9I TTAA 4 cut(s) 351, 528, 843, 1203
TscAI CASTG 5 cut(s) 311, 388, 436, 949, 1057
TseI GCWGC 7 cut(s) 272, 838, 875, 1069, 1072, 1316, 1356
TspGWI ACGGA 1 cut(s) 225
TspRI CASTG 5 cut(s) 311, 388, 436, 949, 1057
Tth111I GACNNNGTC 1 cut(s) 710
Van91I CCANNNNNTGG 2 cut(s) 960, 1235
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 3 cut(s) 1232, 1293, 1444
XbaI TCTAGA 1 cut(s) 358
XcmI CCANNNNNNNNNTGG 1 cut(s) 693
XmiI GTMKAC 2 cut(s) 316, 936
XmnI GAANNNNTTC 2 cut(s) 624, 1104
XspI CTAG 2 cut(s) 359, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.