RLG00000032878

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000354
Physical Location & Seq
Forward (+)
20261391 .. 20270938
9548 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032878

Sequence Viewer

Length: 711 bp
ATGATTGTGAAAGAAACACTTCGGTTGCATCCTCCAGCTCCTGTTCTTCCTAGAGAGACCATTTCTCCCTTTAAAGTCCTTGGTTATGATGTGAAACCAAAAATACTAATCCTTGTTAATGAGTGGGCAATCCCAAGAGATCCAAAAAGTTGGAAAGACCCAGAAGAGTTTATTCCAAAAAGGTTTTATCATAGCTCTGTGGATTTTAAAGGGCAACAGTTTGAGTTTTTTCTATTTGGTGCTGGTCAAAGAATGTGTCTGGGGATCTATACGGGGACGACGATGGTGGAGCTCGGCCTTGCAAACCTGCTTTACTGCTTTAATTGGAAATTGCCAGACGGAATGACGGAGGAAGATATAAATATGGAAGAAACAACTGGGGCACTTTCCATTTCTATACATAAGAAAACTACTCTTGACCTTGTCCCGGAGATCGATCTAGCCAACGCCTGCATGAGAGCGAGTGGCGACTTTGTTATCGTTCTTGGATTAGAGCCGTCGTGTCGGGCGGATGAAACGGCCAACTGGCTAGGGGAGCTGTCAGTATGGGTGGAATTGCGGAGAAGGTTAGCGACTTTTTCTCATGCAATAGTAAGGATAGTATCAGCACGTGAGGTCATGTGTTTTGCTAGGGCAGCCGCACCATGCATCCGAGTGGCACAAACTGCCTTACGCAAGATCGATCTTCTCTCCTTTAGATGTTGCGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

237

Amino Acids

26.71

Weight (kDa)

6.45

Isoelectric Point (pI)

37.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 127 1.7e-32 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 315
AciI CCGC 3 cut(s) 509, 559, 639
AclWI GGATC 2 cut(s) 134, 272
AcoI YGGCCR 1 cut(s) 519
AcvI CACGTG 1 cut(s) 611
AfiI CCNNNNNNNGG 1 cut(s) 427
AluBI AGCT 4 cut(s) 38, 195, 292, 538
AluI AGCT 4 cut(s) 38, 195, 292, 538
Alw21I GWGCWC 1 cut(s) 294
Alw26I GTCTC 1 cut(s) 50
AlwI GGATC 2 cut(s) 134, 272
AlwNI CAGNNNCTG 1 cut(s) 41
AoxI GGCC 2 cut(s) 295, 519
ApeKI GCWGC 1 cut(s) 635
ArsI GACNNNNNNTTYG 2 cut(s) 241, 273
Asp700I GAANNNNTTC 1 cut(s) 18
AsuC2I CCSGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 385
BanII GRGCYC 1 cut(s) 294
BbrPI CACGTG 1 cut(s) 611
Bbv12I GWGCWC 1 cut(s) 294
BbvI GCAGC 1 cut(s) 647
BccI CCATC 1 cut(s) 277
BceAI ACGGC 2 cut(s) 481, 534
BcnI CCSGG 1 cut(s) 428
BcoDI GTCTC 1 cut(s) 50
BfaI CTAG 4 cut(s) 51, 440, 530, 630
BfuAI ACCTGC 1 cut(s) 315
BisI GCNGC 2 cut(s) 636, 639
BlsI GCNGC 2 cut(s) 637, 640
Bme1390I CCNGG 1 cut(s) 428
BmrFI CCNGG 1 cut(s) 428
BmrI ACTGGG 1 cut(s) 387
BmsI GCATC 2 cut(s) 37, 657
BmuI ACTGGG 1 cut(s) 387
BpmI CTGGAG 1 cut(s) 18
BpuMI CCSGG 1 cut(s) 428
Bsa29I ATCGAT 2 cut(s) 435, 681
BsaAI YACGTR 1 cut(s) 611
BsaI GGTCTC 1 cut(s) 50
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 427
Bse1I ACTGG 2 cut(s) 382, 530
BseCI ATCGAT 2 cut(s) 435, 681
BseDI CCNNGG 1 cut(s) 79
BseGI GGATG 3 cut(s) 28, 517, 648
BseLI CCNNNNNNNGG 1 cut(s) 427
BseNI ACTGG 2 cut(s) 382, 530
BseSI GKGCMC 1 cut(s) 385
BseXI GCAGC 1 cut(s) 647
BshFI GGCC 2 cut(s) 297, 521
BshVI ATCGAT 2 cut(s) 435, 681
BsiHKAI GWGCWC 1 cut(s) 294
BsiSI CCGG 1 cut(s) 428
BslFI GGGAC 2 cut(s) 289, 410
BslI CCNNNNNNNGG 1 cut(s) 427
BsmAI GTCTC 1 cut(s) 50
BsmFI GGGAC 2 cut(s) 289, 410
BsnI GGCC 2 cut(s) 297, 521
Bso31I GGTCTC 1 cut(s) 50
Bsp1286I GDGCHC 2 cut(s) 294, 385
Bsp143I GATC 6 cut(s) 139, 264, 432, 436, 678, 682
BspACI CCGC 3 cut(s) 509, 559, 639
BspANI GGCC 2 cut(s) 297, 521
BspDI ATCGAT 2 cut(s) 435, 681
BspMI ACCTGC 1 cut(s) 315
BspPI GGATC 2 cut(s) 134, 272
BspTNI GGTCTC 1 cut(s) 50
BsrI ACTGG 2 cut(s) 382, 530
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 6 cut(s) 139, 264, 432, 436, 678, 682
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 219
Bst6I CTCTTC 1 cut(s) 159
BstAPI GCANNNNNTGC 1 cut(s) 665
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 1 cut(s) 451
BstF5I GGATG 3 cut(s) 28, 517, 648
BstKTI GATC 6 cut(s) 142, 267, 435, 439, 681, 685
BstMAI GTCTC 1 cut(s) 50
BstMBI GATC 6 cut(s) 139, 264, 432, 436, 678, 682
BstMWI GCNNNNNNNGC 3 cut(s) 535, 635, 665
BstSCI CCNGG 1 cut(s) 426
BstSLI GKGCMC 1 cut(s) 385
BstV1I GCAGC 1 cut(s) 647
BstX2I RGATCY 2 cut(s) 139, 264
BstXI CCANNNNNNTGG 1 cut(s) 150
BstYI RGATCY 2 cut(s) 139, 264
Bsu15I ATCGAT 2 cut(s) 435, 681
BsuRI GGCC 2 cut(s) 297, 521
BsuTUI ATCGAT 2 cut(s) 435, 681
BtsCI GGATG 3 cut(s) 28, 517, 648
BveI ACCTGC 1 cut(s) 315
Cac8I GCNNGC 1 cut(s) 451
CaiI CAGNNNCTG 1 cut(s) 41
ClaI ATCGAT 2 cut(s) 435, 681
CviAII CATG 4 cut(s) 454, 584, 619, 645
DpnI GATC 6 cut(s) 141, 266, 434, 438, 680, 684
DpnII GATC 6 cut(s) 139, 264, 432, 436, 678, 682
DraI TTTAAA 2 cut(s) 73, 208
EaeI YGGCCR 1 cut(s) 519
Eam1104I CTCTTC 1 cut(s) 159
EarI CTCTTC 1 cut(s) 159
EciI GGCGGA 1 cut(s) 524
Ecl136II GAGCTC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 79
Eco24I GRGCYC 1 cut(s) 294
Eco31I GGTCTC 1 cut(s) 50
Eco53kI GAGCTC 1 cut(s) 292
Eco72I CACGTG 1 cut(s) 611
EcoICRI GAGCTC 1 cut(s) 292
EcoT14I CCWWGG 1 cut(s) 79
EcoT22I ATGCAT 1 cut(s) 650
EcoT38I GRGCYC 1 cut(s) 294
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 4 cut(s) 457, 587, 622, 648
FalI AAGNNNNNCTT 1 cut(s) 35
FaqI GGGAC 2 cut(s) 289, 410
FatI CATG 4 cut(s) 453, 583, 618, 644
Fnu4HI GCNGC 2 cut(s) 636, 639
FokI GGATG 3 cut(s) 15, 524, 635
FriOI GRGCYC 1 cut(s) 294
Fsp4HI GCNGC 2 cut(s) 636, 639
FspBI CTAG 4 cut(s) 51, 440, 530, 630
GluI GCNGC 2 cut(s) 636, 639
GsuI CTGGAG 1 cut(s) 18
HaeIII GGCC 2 cut(s) 297, 521
HapII CCGG 1 cut(s) 428
Hin1II CATG 4 cut(s) 457, 587, 622, 648
HpaII CCGG 1 cut(s) 428
Hpy188I TCNGA 1 cut(s) 653
Hpy188III TCNNGA 1 cut(s) 416
Hpy99I CGWCG 2 cut(s) 283, 502
HpyAV CCTTC 1 cut(s) 558
HpyCH4III ACNGT 1 cut(s) 219
HpyCH4IV ACGT 1 cut(s) 610
HpyCH4V TGCA 5 cut(s) 28, 302, 453, 587, 648
HpyF10VI GCNNNNNNNGC 3 cut(s) 535, 635, 665
HpySE526I ACGT 1 cut(s) 610
Hsp92II CATG 4 cut(s) 457, 587, 622, 648
Kzo9I GATC 6 cut(s) 139, 264, 432, 436, 678, 682
LmnI GCTCC 3 cut(s) 43, 289, 535
Lsp1109I GCAGC 1 cut(s) 647
LweI GCATC 2 cut(s) 37, 657
MaeI CTAG 4 cut(s) 51, 440, 530, 630
MaeII ACGT 1 cut(s) 610
MalI GATC 6 cut(s) 141, 266, 434, 438, 680, 684
MboI GATC 6 cut(s) 139, 264, 432, 436, 678, 682
MboII GAAGA 5 cut(s) 38, 176, 365, 380, 677
MflI RGATCY 2 cut(s) 139, 264
MhlI GDGCHC 2 cut(s) 294, 385
MluCI AATT 3 cut(s) 322, 329, 554
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 3 cut(s) 42, 343, 607
Mph1103I ATGCAT 1 cut(s) 650
MroXI GAANNNNTTC 1 cut(s) 18
MseI TTAA 4 cut(s) 72, 117, 207, 321
MslI CAYNNNNRTG 1 cut(s) 653
MspI CCGG 1 cut(s) 428
MspR9I CCNGG 1 cut(s) 428
MwoI GCNNNNNNNGC 3 cut(s) 535, 635, 665
NciI CCSGG 1 cut(s) 428
NdeII GATC 6 cut(s) 139, 264, 432, 436, 678, 682
NlaIII CATG 4 cut(s) 457, 587, 622, 648
NmeAIII GCCGAG 1 cut(s) 273
NsiI ATGCAT 1 cut(s) 650
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PdmI GAANNNNTTC 1 cut(s) 18
PflFI GACNNNGTC 1 cut(s) 422
PfoI TCCNGGA 1 cut(s) 426
PkrI GCNGC 2 cut(s) 637, 640
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
Ppu21I YACGTR 1 cut(s) 611
Psp124BI GAGCTC 1 cut(s) 294
PspCI CACGTG 1 cut(s) 611
PstNI CAGNNNCTG 1 cut(s) 41
PsuI RGATCY 2 cut(s) 139, 264
PsyI GACNNNGTC 1 cut(s) 422
RseI CAYNNNNRTG 1 cut(s) 653
SacI GAGCTC 1 cut(s) 294
SaqAI TTAA 4 cut(s) 72, 117, 207, 321
SatI GCNGC 2 cut(s) 636, 639
Sau3AI GATC 6 cut(s) 139, 264, 432, 436, 678, 682
ScrFI CCNGG 1 cut(s) 428
SduI GDGCHC 2 cut(s) 294, 385
SfaNI GCATC 2 cut(s) 37, 657
SmiMI CAYNNNNRTG 1 cut(s) 653
Sse9I AATT 3 cut(s) 322, 329, 554
SsiI CCGC 3 cut(s) 509, 559, 639
SspMI CTAG 4 cut(s) 51, 440, 530, 630
SstI GAGCTC 1 cut(s) 294
StyD4I CCNGG 1 cut(s) 426
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 219
TaiI ACGT 1 cut(s) 613
TaqI TCGA 2 cut(s) 435, 681
TasI AATT 3 cut(s) 322, 329, 554
TauI GCSGC 1 cut(s) 641
Tru1I TTAA 4 cut(s) 72, 117, 207, 321
Tru9I TTAA 4 cut(s) 72, 117, 207, 321
TseI GCWGC 1 cut(s) 635
TspDTI ATGAA 1 cut(s) 528
TspGWI ACGGA 2 cut(s) 354, 362
Tth111I GACNNNGTC 1 cut(s) 422
XmnI GAANNNNTTC 1 cut(s) 18
XspI CTAG 4 cut(s) 51, 440, 530, 630
Zsp2I ATGCAT 1 cut(s) 650
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.