Rh4BG222000

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000354
Physical Location & Seq
Reverse (-)
38304012 .. 38304395
384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG222000.1

Sequence Viewer

Length: 384 bp
ATGTCCCACTTCAAAGTCCTCAGCTATGATGTCGACCCCAGAACAACAATCATTGTTAATGACTGGGCAATCTCACGAGATCCAGAATTTTGGAACGACCCAGAAAAGTTCATTCCGGAAAGATTTGATGATAGGTCTGTTGATTTTAAAGGGCAACACTTTGACTTCTTGCCATTTGGAGCTGGTCGAAGAATTTGTCCAGGGATTTATATGGCAACGACGATAATGGAGCTTACACTTGCCAATTTGTTGTGCTGCTTTGATTGGAAAGTGCCTGATGGAATGAACGAGGAAGATATCAAGATGGAAGAAACAACCCATGGGGTAACTAATTCCTTGAAAAATCCTCTCAACCTTGTCCCTGACATGGTTGAGGGTCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

127

Amino Acids

14.64

Weight (kDa)

4.56

Isoelectric Point (pI)

34.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 5 - 107 4.2e-30 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 33
AccIII TCCGGA 1 cut(s) 115
AclWI GGATC 1 cut(s) 74
AcsI RAATTY 2 cut(s) 86, 192
AfiI CCNNNNNNNGG 1 cut(s) 367
AgsI TTSAA 2 cut(s) 13, 340
AjnI CCWGG 1 cut(s) 199
AluBI AGCT 3 cut(s) 24, 182, 232
AluI AGCT 3 cut(s) 24, 182, 232
AlwI GGATC 1 cut(s) 74
Aor13HI TCCGGA 1 cut(s) 115
ApeKI GCWGC 1 cut(s) 255
ApoI RAATTY 2 cut(s) 86, 192
ArsI GACNNNNNNTTYG 2 cut(s) 181, 213
AspS9I GGNCC 1 cut(s) 377
AvaII GGWCC 1 cut(s) 377
BauI CACGAG 1 cut(s) 75
BbvCI CCTCAGC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 242
BccI CCATC 2 cut(s) 272, 298
BciT130I CCWGG 1 cut(s) 201
BisI GCNGC 1 cut(s) 256
BlsI GCNGC 1 cut(s) 257
Bme1390I CCNGG 1 cut(s) 201
Bme18I GGWCC 1 cut(s) 377
BmgT120I GGNCC 1 cut(s) 377
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 1 cut(s) 201
BmrI ACTGGG 1 cut(s) 73
BmuI ACTGGG 1 cut(s) 73
Bpu10I CCTNAGC 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 200, 319
BsaWI WCCGGW 1 cut(s) 115
Bsc4I CCNNNNNNNGG 1 cut(s) 367
Bse1I ACTGG 1 cut(s) 68
BseAI TCCGGA 1 cut(s) 115
BseBI CCWGG 1 cut(s) 201
BseDI CCNNGG 2 cut(s) 200, 319
BseLI CCNNNNNNNGG 1 cut(s) 367
BseMII CTCAG 1 cut(s) 34
BseNI ACTGG 1 cut(s) 68
BseXI GCAGC 1 cut(s) 242
BsiSI CCGG 1 cut(s) 116
BslFI GGGAC 1 cut(s) 344
BslI CCNNNNNNNGG 1 cut(s) 367
BsmFI GGGAC 1 cut(s) 344
Bsp13I TCCGGA 1 cut(s) 115
Bsp143I GATC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 319
BspCNI CTCAG 1 cut(s) 33
BspEI TCCGGA 1 cut(s) 115
BspLI GGNNCC 1 cut(s) 378
BspPI GGATC 1 cut(s) 74
BsrI ACTGG 1 cut(s) 68
BssECI CCNNGG 2 cut(s) 200, 319
BssMI GATC 1 cut(s) 79
BssSI CACGAG 1 cut(s) 75
BssT1I CCWWGG 1 cut(s) 319
Bst2BI CACGAG 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 201
BstDEI CTNAG 1 cut(s) 20
BstDSI CCRYGG 1 cut(s) 319
BstKTI GATC 1 cut(s) 82
BstMBI GATC 1 cut(s) 79
BstNI CCWGG 1 cut(s) 201
BstSCI CCNGG 1 cut(s) 199
BstV1I GCAGC 1 cut(s) 242
BstX2I RGATCY 1 cut(s) 79
BstXI CCANNNNNNTGG 1 cut(s) 90
BstYI RGATCY 1 cut(s) 79
BtgI CCRYGG 1 cut(s) 319
Cfr13I GGNCC 1 cut(s) 377
CviAII CATG 2 cut(s) 320, 367
CviJI RGCY 3 cut(s) 24, 182, 232
CviKI_1 RGCY 3 cut(s) 24, 182, 232
DdeI CTNAG 1 cut(s) 20
DpnI GATC 1 cut(s) 81
DpnII GATC 1 cut(s) 79
DraI TTTAAA 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 319
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 377
EcoO109I RGGNCCY 1 cut(s) 377
EcoRII CCWGG 1 cut(s) 199
EcoRV GATATC 1 cut(s) 298
EcoT14I CCWWGG 1 cut(s) 319
ErhI CCWWGG 1 cut(s) 319
FaeI CATG 2 cut(s) 323, 370
FaiI YATR 5 cut(s) 27, 210, 212, 321, 368
FaqI GGGAC 1 cut(s) 344
FatI CATG 2 cut(s) 319, 366
FblI GTMKAC 1 cut(s) 33
Fnu4HI GCNGC 1 cut(s) 256
Fsp4HI GCNGC 1 cut(s) 256
GluI GCNGC 1 cut(s) 256
HapII CCGG 1 cut(s) 116
Hin1II CATG 2 cut(s) 323, 370
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HpaII CCGG 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 34
Hpy188III TCNNGA 4 cut(s) 75, 83, 116, 301
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 1 cut(s) 223
HpyF3I CTNAG 1 cut(s) 20
Hsp92II CATG 2 cut(s) 323, 370
Kpn2I TCCGGA 1 cut(s) 115
Kzo9I GATC 1 cut(s) 79
LmnI GCTCC 2 cut(s) 179, 229
Lsp1109I GCAGC 1 cut(s) 242
MaeIII GTNAC 1 cut(s) 325
MalI GATC 1 cut(s) 81
MboI GATC 1 cut(s) 79
MboII GAAGA 3 cut(s) 201, 305, 320
MflI RGATCY 1 cut(s) 79
MluCI AATT 4 cut(s) 86, 192, 244, 331
MnlI CCTC 4 cut(s) 29, 283, 357, 367
MroI TCCGGA 1 cut(s) 115
MseI TTAA 3 cut(s) 57, 147, 382
MspI CCGG 1 cut(s) 116
MspR9I CCNGG 1 cut(s) 201
MvaI CCWGG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 319
NdeII GATC 1 cut(s) 79
NlaIII CATG 2 cut(s) 323, 370
NlaIV GGNNCC 1 cut(s) 378
PkrI GCNGC 1 cut(s) 257
PpuMI RGGWCCY 1 cut(s) 377
Psp5II RGGWCCY 1 cut(s) 377
Psp6I CCWGG 1 cut(s) 199
PspGI CCWGG 1 cut(s) 199
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 1 cut(s) 377
PspPPI RGGWCCY 1 cut(s) 377
PsuI RGATCY 1 cut(s) 79
SalI GTCGAC 1 cut(s) 32
SaqAI TTAA 3 cut(s) 57, 147, 382
SatI GCNGC 1 cut(s) 256
Sau3AI GATC 1 cut(s) 79
Sau96I GGNCC 1 cut(s) 377
ScrFI CCNGG 1 cut(s) 201
SetI ASST 5 cut(s) 26, 137, 184, 234, 357
SinI GGWCC 1 cut(s) 377
Sse9I AATT 4 cut(s) 86, 192, 244, 331
StyD4I CCNGG 1 cut(s) 199
StyI CCWWGG 1 cut(s) 319
TaqI TCGA 2 cut(s) 33, 187
TasI AATT 4 cut(s) 86, 192, 244, 331
Tru1I TTAA 3 cut(s) 57, 147, 382
Tru9I TTAA 3 cut(s) 57, 147, 382
TseI GCWGC 1 cut(s) 255
TspDTI ATGAA 2 cut(s) 100, 299
VpaK11BI GGWCC 1 cut(s) 377
XapI RAATTY 2 cut(s) 86, 192
XmiI GTMKAC 1 cut(s) 33
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.