AT5G57260

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
23198589 .. 23200318
1730 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G57260.1

Sequence Viewer

Length: 1509 bp
ATGACTGTGCTTTGGTTTGTATCACTTATCTTACTCATCTCTATCCTTCTCGTTGCCGTCAAACACTCTAAGCGGCGATGGGTCCGGCAACCACCGTCTCCTCCAGGCTTACCAATCATTGGAAACTTGCACCAGCTTGGAGAATTACCACATCAATCTCTATGTAAGCTCTCAAAGAAGTATGGTCCTGTAATGTTACTGAAACTTGGAAGAGTTCCAACAGTTATAGTTTCTACTCCTGAAACAGCAAAACAAGTTCTTAAAGACTATGACCTCCACTGTTGTAGCCGTCCAAGCTTGGAAGGTACAAGAAAGCTTTCTTACAACTATCTAGACATTGCTTTCTCTAGATTTGATGATTATTGGAAAGAATTAAGGAAGCTTTGTGTTGAAGAACTCTTTTGTAATAAACGAATTAACTCGATTCAACCAATCAAGGAGGCGGAGATGGAGAAACTGATTGACTCAATTGCTGAATCTGCTTCTCAGAAAACTCTGGTTAACTTGAGTGATACGTTTCTTTCTTTAAACGTTAACGTAATTTGCAAGGCAGTATTTGGTGTGAATTTCCAAGGAACTGTGCTTAACAATGATAAGTTCCAAGATTTAGTCCACGAGGCACTTGAGATGTTGGGGAGCTTCTCTGCTTCGGATTTCTTCCCGTATGTCGGTTGGATTGTCGATTGGTTCACGGGTTTACACGCTCGGAGGGAGAGAAGCGTACGAGATCTTGATGCTTTCTATGAACAAATGATTGATTTACATCTACAGAAAAACAGAGAAGAAAGTGAAGATGATTTTGTGGACTTGCTCTTGAGGTTGGAAAAGGAAGAAGCTGTTCTTGGATATGGCAAACTCACAAGAAACCACATCAAAGCAATCTTGATGAACATTCTTTTGGGGGGAATCAATACTTCTGCAATAACCATGACATGGGCAATGGCGGAACTCATAAGAAACCCACGAGTGATGAAGAAAGTTCAATCCGAAATCAGAGCCCAAATAGGGAAAAACAACAAAACAAGAATCATAAGTTTAGATGAGATAAATCATCTCAGTTACCTAAATATGGTTATCAAAGAAACATGCCGGTTACATCCAGTAGCACCTCTTCTAGTCCCAAGAGAAGTGATATCTGAATTCAAGATCAACGGCTACACGATTCAACCGAAGACAAGGCTTCATGTCAACGTATGGGCTATCGGACGTGATCCCGAGATATGGAAAGATCCAGAAGAGTTTCTCCCAGAGAGGTTTATGGACTGTGACATTGATGTTAAAGGACAAGACTATGAGTTGTTACCATTTGGAAGTGGTCGAAGAATTTGTCCAGCAGTGTACATGGGGATAACAACAGTTGAGTTTGGTCTTGCTAATCTCTTGTATCACTTTGATTGGAAGTTACCAGAAGGTGTTGCCGTTGAAGATATTTACATGGATGAAGCTTCTGGACTCACTTCTCATAAGAAACATGACCTTTTACTTGTTCCTGTGAAATCTTTAGTGTAA

Protein Analysis

502

Amino Acids

57.5

Weight (kDa)

6.72

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 31 - 492 7.6e-103 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 119, 933
AciI CCGC 3 cut(s) 73, 443, 944
AclI AACGTT 1 cut(s) 531
AclWI GGATC 2 cut(s) 1205, 1223
AcsI RAATTY 3 cut(s) 565, 1139, 1323
AfaI GTAC 3 cut(s) 307, 723, 1340
AfiI CCNNNNNNNGG 6 cut(s) 119, 668, 933, 1005, 1069, 1221
AgsI TTSAA 6 cut(s) 392, 428, 983, 1144, 1166, 1424
AjiI CACGTC 1 cut(s) 1208
AjnI CCWGG 1 cut(s) 103
AjuI GAANNNNNNNTTGG 4 cut(s) 825, 857, 881, 913
AluBI AGCT 8 cut(s) 136, 169, 297, 316, 382, 639, 836, 1445
AluI AGCT 8 cut(s) 136, 169, 297, 316, 382, 639, 836, 1445
Alw26I GTCTC 1 cut(s) 102
AlwI GGATC 2 cut(s) 1205, 1223
Ama87I CYCGRG 1 cut(s) 1214
ApoI RAATTY 3 cut(s) 565, 1139, 1323
ArsI GACNNNNNNTTYG 2 cut(s) 1312, 1344
Asp700I GAANNNNTTC 3 cut(s) 316, 837, 1239
AspS9I GGNCC 2 cut(s) 82, 185
AvaI CYCGRG 1 cut(s) 1214
AvaII GGWCC 2 cut(s) 82, 185
BanII GRGCYC 1 cut(s) 1000
BarI GAAGNNNNNNTAC 2 cut(s) 1095, 1127
BauI CACGAG 2 cut(s) 614, 963
BbsI GAAGAC 1 cut(s) 1178
BccI CCATC 2 cut(s) 72, 442
BceAI ACGGC 4 cut(s) 41, 273, 1168, 1403
BciT130I CCWGG 1 cut(s) 105
BcoDI GTCTC 1 cut(s) 102
BfaI CTAG 3 cut(s) 332, 348, 1115
BfmI CTRYAG 1 cut(s) 767
BglII AGATCT 1 cut(s) 727
BisI GCNGC 1 cut(s) 74
BlsI GCNGC 1 cut(s) 75
Bme1390I CCNGG 1 cut(s) 105
Bme18I GGWCC 2 cut(s) 82, 185
BmeT110I CYCGRG 1 cut(s) 1214
BmgBI CACGTC 1 cut(s) 1208
BmgT120I GGNCC 2 cut(s) 82, 185
BmiI GGNNCC 1 cut(s) 83
BmrFI CCNGG 1 cut(s) 105
BmsI GCATC 1 cut(s) 724
BpiI GAAGAC 1 cut(s) 1178
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 3 cut(s) 526, 644, 835
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 1 cut(s) 571
Bsc4I CCNNNNNNNGG 6 cut(s) 119, 668, 933, 1005, 1069, 1221
Bse118I RCCGGY 1 cut(s) 1089
Bse1I ACTGG 1 cut(s) 1100
Bse3DI GCAATG 2 cut(s) 336, 945
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 571
BseGI GGATG 2 cut(s) 1096, 1444
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 6 cut(s) 119, 668, 933, 1005, 1069, 1221
BseMI GCAATG 2 cut(s) 336, 945
BseMII CTCAG 2 cut(s) 500, 1069
BseNI ACTGG 1 cut(s) 1100
BseRI GAGGAG 1 cut(s) 90
BsiHKCI CYCGRG 1 cut(s) 1214
BsiSI CCGG 2 cut(s) 85, 1090
BsiWI CGTACG 1 cut(s) 721
BslFI GGGAC 1 cut(s) 1103
BslI CCNNNNNNNGG 6 cut(s) 119, 668, 933, 1005, 1069, 1221
BsmAI GTCTC 1 cut(s) 102
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 1103
BsoBI CYCGRG 1 cut(s) 1214
Bsp1286I GDGCHC 1 cut(s) 1000
Bsp1407I TGTACA 1 cut(s) 1338
Bsp143I GATC 4 cut(s) 727, 1146, 1210, 1228
BspACI CCGC 3 cut(s) 73, 443, 944
BspCNI CTCAG 2 cut(s) 499, 1068
BspLI GGNNCC 1 cut(s) 83
BspPI GGATC 2 cut(s) 1205, 1223
BsrDI GCAATG 2 cut(s) 336, 945
BsrFI RCCGGY 1 cut(s) 1089
BsrGI TGTACA 1 cut(s) 1338
BsrI ACTGG 1 cut(s) 1100
BssAI RCCGGY 1 cut(s) 1089
BssECI CCNNGG 1 cut(s) 571
BssMI GATC 4 cut(s) 727, 1146, 1210, 1228
BssSI CACGAG 2 cut(s) 614, 963
BssT1I CCWWGG 1 cut(s) 571
Bst2BI CACGAG 2 cut(s) 614, 963
Bst2UI CCWGG 1 cut(s) 105
Bst4CI ACNGT 7 cut(s) 7, 96, 223, 281, 580, 1265, 1357
Bst6I CTCTTC 3 cut(s) 205, 1116, 1230
BstAUI TGTACA 1 cut(s) 1338
BstDEI CTNAG 3 cut(s) 69, 486, 1055
BstF5I GGATG 2 cut(s) 1096, 1444
BstKTI GATC 4 cut(s) 730, 1149, 1213, 1231
BstMAI GTCTC 1 cut(s) 102
BstMBI GATC 4 cut(s) 727, 1146, 1210, 1228
BstMWI GCNNNNNNNGC 2 cut(s) 294, 479
BstNI CCWGG 1 cut(s) 105
BstNSI RCATGY 1 cut(s) 1089
BstSCI CCNGG 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 767
BstV2I GAAGAC 1 cut(s) 1178
BstX2I RGATCY 2 cut(s) 727, 1228
BstYI RGATCY 2 cut(s) 727, 1228
BtgZI GCGATG 1 cut(s) 91
BtrI CACGTC 1 cut(s) 1208
BtsCI GGATG 2 cut(s) 1096, 1444
BtsI GCAGTG 1 cut(s) 1341
BtsIMutI CAGTG 2 cut(s) 277, 1341
Cfr10I RCCGGY 1 cut(s) 1089
Cfr13I GGNCC 2 cut(s) 82, 185
Csp6I GTAC 3 cut(s) 306, 722, 1339
CviAII CATG 7 cut(s) 928, 933, 1086, 1184, 1342, 1435, 1472
CviQI GTAC 3 cut(s) 306, 722, 1339
DdeI CTNAG 3 cut(s) 69, 486, 1055
DpnI GATC 4 cut(s) 729, 1148, 1212, 1230
DpnII GATC 4 cut(s) 727, 1146, 1210, 1228
DraI TTTAAA 1 cut(s) 528
Eam1104I CTCTTC 3 cut(s) 205, 1116, 1230
EarI CTCTTC 3 cut(s) 205, 1116, 1230
EciI GGCGGA 2 cut(s) 458, 959
Eco130I CCWWGG 1 cut(s) 571
Eco24I GRGCYC 1 cut(s) 1000
Eco32I GATATC 1 cut(s) 1134
Eco47I GGWCC 2 cut(s) 82, 185
Eco88I CYCGRG 1 cut(s) 1214
EcoRI GAATTC 1 cut(s) 1139
EcoRII CCWGG 1 cut(s) 103
EcoRV GATATC 1 cut(s) 1134
EcoT14I CCWWGG 1 cut(s) 571
EcoT38I GRGCYC 1 cut(s) 1000
ErhI CCWWGG 1 cut(s) 571
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 7 cut(s) 931, 936, 1089, 1187, 1345, 1438, 1475
FalI AAGNNNNNCTT 2 cut(s) 825, 857
FaqI GGGAC 1 cut(s) 1103
FatI CATG 7 cut(s) 927, 932, 1085, 1183, 1341, 1434, 1471
Fnu4HI GCNGC 1 cut(s) 74
FokI GGATG 2 cut(s) 1083, 1451
FriOI GRGCYC 1 cut(s) 1000
Fsp4HI GCNGC 1 cut(s) 74
FspBI CTAG 3 cut(s) 332, 348, 1115
GluI GCNGC 1 cut(s) 74
GsuI CTGGAG 1 cut(s) 87
HapII CCGG 2 cut(s) 85, 1090
Hin1II CATG 7 cut(s) 931, 936, 1089, 1187, 1345, 1438, 1475
HincII GTYRAC 3 cut(s) 502, 535, 1189
HindII GTYRAC 3 cut(s) 502, 535, 1189
HindIII AAGCTT 4 cut(s) 295, 314, 380, 1443
HinfI GANTC 7 cut(s) 424, 464, 476, 906, 1026, 1162, 1452
HpaI GTTAAC 2 cut(s) 502, 535
HpaII CCGG 2 cut(s) 85, 1090
Hpy166II GTNNAC 8 cut(s) 502, 535, 613, 690, 698, 805, 1189, 1339
Hpy188I TCNGA 7 cut(s) 489, 652, 708, 988, 995, 1138, 1205
Hpy8I GTNNAC 8 cut(s) 502, 535, 613, 690, 698, 805, 1189, 1339
HpyAV CCTTC 3 cut(s) 56, 296, 1403
HpyCH4III ACNGT 7 cut(s) 7, 96, 223, 281, 580, 1265, 1357
HpyCH4IV ACGT 5 cut(s) 515, 531, 537, 1191, 1207
HpyCH4V TGCA 3 cut(s) 130, 546, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 479
HpyF3I CTNAG 3 cut(s) 69, 486, 1055
HpySE526I ACGT 5 cut(s) 515, 531, 537, 1191, 1207
Hsp92II CATG 7 cut(s) 931, 936, 1089, 1187, 1345, 1438, 1475
KspAI GTTAAC 2 cut(s) 502, 535
Kzo9I GATC 4 cut(s) 727, 1146, 1210, 1228
LmnI GCTCC 1 cut(s) 636
LweI GCATC 1 cut(s) 724
MaeI CTAG 3 cut(s) 332, 348, 1115
MaeII ACGT 5 cut(s) 515, 531, 537, 1191, 1207
MaeIII GTNAC 6 cut(s) 195, 1058, 1092, 1265, 1299, 1401
MalI GATC 4 cut(s) 729, 1148, 1212, 1230
MboI GATC 4 cut(s) 727, 1146, 1210, 1228
MfeI CAATTG 1 cut(s) 468
MflI RGATCY 2 cut(s) 727, 1228
MhlI GDGCHC 1 cut(s) 1000
MluCI AATT 8 cut(s) 143, 371, 414, 468, 540, 565, 1139, 1323
MlyI GAGTC 2 cut(s) 458, 1446
MmeI TCCRAC 3 cut(s) 242, 653, 801
MnlI CCTC 8 cut(s) 111, 284, 433, 610, 702, 810, 1119, 1245
MroXI GAANNNNTTC 3 cut(s) 316, 837, 1239
MseI TTAA 8 cut(s) 261, 374, 417, 501, 527, 534, 585, 1278
MspI CCGG 2 cut(s) 85, 1090
MspR9I CCNGG 1 cut(s) 105
MunI CAATTG 1 cut(s) 468
MvaI CCWGG 1 cut(s) 105
MwoI GCNNNNNNNGC 2 cut(s) 294, 479
NdeII GATC 4 cut(s) 727, 1146, 1210, 1228
NlaIII CATG 7 cut(s) 931, 936, 1089, 1187, 1345, 1438, 1475
NlaIV GGNNCC 1 cut(s) 83
NmuCI GTSAC 1 cut(s) 1265
NspI RCATGY 1 cut(s) 1089
PcsI WCGNNNNNNNCGW 1 cut(s) 1166
PdmI GAANNNNTTC 3 cut(s) 316, 837, 1239
PfeI GAWTC 5 cut(s) 424, 476, 906, 1026, 1162
Pfl23II CGTACG 1 cut(s) 721
PflMI CCANNNNNTGG 2 cut(s) 119, 933
PkrI GCNGC 1 cut(s) 75
PleI GAGTC 2 cut(s) 458, 1446
PpsI GAGTC 2 cut(s) 458, 1446
Psp1406I AACGTT 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 103
PspGI CCWGG 1 cut(s) 103
PspLI CGTACG 1 cut(s) 721
PspN4I GGNNCC 1 cut(s) 83
PspPI GGNCC 2 cut(s) 82, 185
PsuI RGATCY 2 cut(s) 727, 1228
RsaI GTAC 3 cut(s) 307, 723, 1340
RsaNI GTAC 3 cut(s) 306, 722, 1339
SaqAI TTAA 8 cut(s) 261, 374, 417, 501, 527, 534, 585, 1278
SatI GCNGC 1 cut(s) 74
Sau3AI GATC 4 cut(s) 727, 1146, 1210, 1228
Sau96I GGNCC 2 cut(s) 82, 185
SchI GAGTC 2 cut(s) 458, 1446
ScrFI CCNGG 1 cut(s) 105
SduI GDGCHC 1 cut(s) 1000
SfaNI GCATC 1 cut(s) 724
SfcI CTRYAG 1 cut(s) 767
SinI GGWCC 2 cut(s) 82, 185
SmlI CTYRAG 3 cut(s) 505, 623, 814
SmoI CTYRAG 3 cut(s) 505, 623, 814
Sse9I AATT 8 cut(s) 143, 371, 414, 468, 540, 565, 1139, 1323
SsiI CCGC 3 cut(s) 73, 443, 944
SspMI CTAG 3 cut(s) 332, 348, 1115
StyD4I CCNGG 1 cut(s) 103
StyI CCWWGG 1 cut(s) 571
TaaI ACNGT 7 cut(s) 7, 96, 223, 281, 580, 1265, 1357
TaiI ACGT 5 cut(s) 518, 534, 540, 1194, 1210
TaqI TCGA 3 cut(s) 422, 681, 1318
TasI AATT 8 cut(s) 143, 371, 414, 468, 540, 565, 1139, 1323
TatI WGTACW 1 cut(s) 1338
TauI GCSGC 1 cut(s) 76
TfiI GAWTC 5 cut(s) 424, 476, 906, 1026, 1162
Tru1I TTAA 8 cut(s) 261, 374, 417, 501, 527, 534, 585, 1278
Tru9I TTAA 8 cut(s) 261, 374, 417, 501, 527, 534, 585, 1278
TscAI CASTG 2 cut(s) 284, 1341
TseFI GTSAC 1 cut(s) 1265
Tsp45I GTSAC 1 cut(s) 1265
TspDTI ATGAA 5 cut(s) 759, 902, 986, 1172, 1455
TspRI CASTG 2 cut(s) 284, 1341
Van91I CCANNNNNTGG 2 cut(s) 119, 933
VpaK11BI GGWCC 2 cut(s) 82, 185
XapI RAATTY 3 cut(s) 565, 1139, 1323
XbaI TCTAGA 2 cut(s) 331, 347
XceI RCATGY 1 cut(s) 1089
XmnI GAANNNNTTC 3 cut(s) 316, 837, 1239
XspI CTAG 3 cut(s) 332, 348, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.