AT1G13090

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
4461738 .. 4463469
1732 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G13090.2

Sequence Viewer

Length: 897 bp
ATGTCAGTCTTCCTCTGTTTCCTCTGCCTCTTACCCCTTATCTTAATCTTCTTGAAAAATCTCAAACCATCGAAATGGAAGCTTCCTCCAGGCCCAAAGAAGCTTCCGATCATCGGGAACTTACACCAACGCCGGGAATTACATCCCAGGAACAGTCGGAATCTTTCCGAAAAGTACGGACCAATCGTGTTTCTCCGATACGGATTCGTCCCCGTGGTCGTGATCTCGTCAAAAGAAGCAGCAGAGGAAGTTCTCAAGACCCACGATCTTGAGTGTTGTAGCCGACCAGAGACGGTTGGGACCAGAGCAATCTCTTACAACTTTAAAGACATCGGATTCGCACCGTACGGTGAAGATTGGAGAACGATGCGGAAGCTCTCGGTGGTCGAGCTCTTCAGCTCGAAAAAGCTTCAATCTTTCAGGTATATCAGAGAGGAAGAGAACGACTTGTGTGTCAAGAAACTCTCTGATTTAGCTTCGAGACGATCTTTGGTGAATCTTGAGAAAACCCTTTTTACTTTAGTCGGAAGTATAGTGTGTAGGATAGGGTTTGGGATAAATCTCCGTGAGTGTGAGTTCGTTGATGAAGATAGCATCGATGATCTTGTGCACAAGTCTGAAGATGTCATAAGGAATTCTATCTTCTCTGATTTCTTTCCCGGATTAATGGGTAGGCTCATCGAGTGGATCTTCAGTGAGAGGAAGAGATTGAATAGACTTTACTCGGAAGTAGACACTTTCTTTCAGAATATTCTTGATGATCATCTCAAGCCTGGAAGAGAGAGCTCTGATATCATCGATGTGATGATTGATATGATGAAGAAGCAAGAGAAAGAGGGAGACTCTTTCAAGTTCACCACTGATCATCTCAAAGGGATGATCTCGGTAAATCTATAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

298

Amino Acids

34.55

Weight (kDa)

8.38

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 29 - 478 1.3e-99 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 452
AccI GTMKAC 1 cut(s) 732
AciI CCGC 1 cut(s) 370
AclWI GGATC 1 cut(s) 695
AcsI RAATTY 1 cut(s) 634
AcuI CTGAAG 3 cut(s) 379, 639, 676
AfaI GTAC 2 cut(s) 176, 347
AfiI CCNNNNNNNGG 2 cut(s) 113, 133
AgsI TTSAA 4 cut(s) 55, 413, 712, 850
AjnI CCWGG 3 cut(s) 88, 146, 772
AluBI AGCT 8 cut(s) 82, 103, 376, 391, 399, 409, 476, 786
AluI AGCT 8 cut(s) 82, 103, 376, 391, 399, 409, 476, 786
Alw21I GWGCWC 3 cut(s) 393, 612, 788
Alw26I GTCTC 3 cut(s) 284, 475, 834
Alw44I GTGCAC 1 cut(s) 608
AlwI GGATC 1 cut(s) 695
AoxI GGCC 1 cut(s) 91
ApaLI GTGCAC 1 cut(s) 608
ApeKI GCWGC 1 cut(s) 239
ApoI RAATTY 1 cut(s) 634
ArsI GACNNNNNNTTYG 2 cut(s) 320, 352
AseI ATTAAT 1 cut(s) 665
AspS9I GGNCC 3 cut(s) 92, 179, 300
AsuC2I CCSGG 2 cut(s) 134, 660
AsuHPI GGTGA 3 cut(s) 362, 505, 847
AvaII GGWCC 2 cut(s) 179, 300
BaeGI GKGCMC 1 cut(s) 612
BanII GRGCYC 2 cut(s) 393, 788
Bbv12I GWGCWC 3 cut(s) 393, 612, 788
BbvI GCAGC 1 cut(s) 251
BccI CCATC 1 cut(s) 76
BciT130I CCWGG 3 cut(s) 90, 148, 774
BclI TGATCA 2 cut(s) 760, 862
BcnI CCSGG 2 cut(s) 134, 660
BcoDI GTCTC 3 cut(s) 284, 475, 834
BisI GCNGC 1 cut(s) 240
BlsI GCNGC 1 cut(s) 241
Bme1390I CCNGG 5 cut(s) 90, 134, 148, 660, 774
Bme18I GGWCC 2 cut(s) 179, 300
BmgT120I GGNCC 3 cut(s) 92, 179, 300
BmiI GGNNCC 1 cut(s) 301
BmrFI CCNGG 5 cut(s) 90, 134, 148, 660, 774
BmsI GCATC 2 cut(s) 357, 603
BplI GAGNNNNNCTC 2 cut(s) 827, 859
BpmI CTGGAG 1 cut(s) 72
BpuEI CTTGAG 4 cut(s) 239, 290, 521, 752
BpuMI CCSGG 2 cut(s) 134, 660
Bsa29I ATCGAT 2 cut(s) 597, 798
BsaBI GATNNNNATC 1 cut(s) 762
BsaJI CCNNGG 2 cut(s) 146, 213
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 133
Bse8I GATNNNNATC 1 cut(s) 762
BseBI CCWGG 3 cut(s) 90, 148, 774
BseCI ATCGAT 2 cut(s) 597, 798
BseDI CCNNGG 2 cut(s) 146, 213
BseGI GGATG 2 cut(s) 142, 882
BseJI GATNNNNATC 1 cut(s) 762
BseLI CCNNNNNNNGG 2 cut(s) 113, 133
BseSI GKGCMC 1 cut(s) 612
BseXI GCAGC 1 cut(s) 251
BshFI GGCC 1 cut(s) 93
BshVI ATCGAT 2 cut(s) 597, 798
BsiHKAI GWGCWC 3 cut(s) 393, 612, 788
BsiSI CCGG 2 cut(s) 133, 660
BsiWI CGTACG 1 cut(s) 345
BslFI GGGAC 2 cut(s) 194, 313
BslI CCNNNNNNNGG 2 cut(s) 113, 133
BsmAI GTCTC 3 cut(s) 284, 475, 834
BsmBI CGTCTC 2 cut(s) 284, 475
BsmFI GGGAC 2 cut(s) 194, 313
BsnI GGCC 1 cut(s) 93
Bsp1286I GDGCHC 3 cut(s) 393, 612, 788
Bsp143I GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
BspACI CCGC 1 cut(s) 370
BspANI GGCC 1 cut(s) 93
BspDI ATCGAT 2 cut(s) 597, 798
BspLI GGNNCC 1 cut(s) 301
BspPI GGATC 1 cut(s) 695
BspQI GCTCTTC 1 cut(s) 398
BssECI CCNNGG 2 cut(s) 146, 213
BssMI GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
Bst2UI CCWGG 3 cut(s) 90, 148, 774
Bst4CI ACNGT 4 cut(s) 155, 295, 345, 350
Bst6I CTCTTC 4 cut(s) 398, 432, 698, 772
BstDSI CCRYGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 142, 882
BstKTI GATC 9 cut(s) 111, 225, 268, 488, 604, 690, 763, 865, 882
BstMAI GTCTC 3 cut(s) 284, 475, 834
BstMBI GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
BstNI CCWGG 3 cut(s) 90, 148, 774
BstSCI CCNGG 5 cut(s) 88, 132, 146, 658, 772
BstSLI GKGCMC 1 cut(s) 612
BstV1I GCAGC 1 cut(s) 251
BstX2I RGATCY 1 cut(s) 687
BstXI CCANNNNNNTGG 1 cut(s) 75
BstYI RGATCY 1 cut(s) 687
Bsu15I ATCGAT 2 cut(s) 597, 798
BsuRI GGCC 1 cut(s) 93
BsuTUI ATCGAT 2 cut(s) 597, 798
BtgI CCRYGG 1 cut(s) 213
BtsCI GGATG 2 cut(s) 142, 882
BtsIMutI CAGTG 2 cut(s) 700, 858
Cfr13I GGNCC 3 cut(s) 92, 179, 300
ClaI ATCGAT 2 cut(s) 597, 798
Csp6I GTAC 2 cut(s) 175, 346
CviQI GTAC 2 cut(s) 175, 346
DpnI GATC 9 cut(s) 110, 224, 267, 487, 603, 689, 762, 864, 881
DpnII GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
DraI TTTAAA 1 cut(s) 325
DrdI GACNNNNNNGTC 1 cut(s) 452
DseDI GACNNNNNNGTC 1 cut(s) 452
Eam1104I CTCTTC 4 cut(s) 398, 432, 698, 772
EarI CTCTTC 4 cut(s) 398, 432, 698, 772
Ecl136II GAGCTC 2 cut(s) 391, 786
Eco24I GRGCYC 2 cut(s) 393, 788
Eco32I GATATC 1 cut(s) 793
Eco47I GGWCC 2 cut(s) 179, 300
Eco53kI GAGCTC 2 cut(s) 391, 786
Eco57I CTGAAG 3 cut(s) 379, 639, 676
EcoICRI GAGCTC 2 cut(s) 391, 786
EcoRI GAATTC 1 cut(s) 634
EcoRII CCWGG 3 cut(s) 88, 146, 772
EcoRV GATATC 1 cut(s) 793
EcoT38I GRGCYC 2 cut(s) 393, 788
Esp3I CGTCTC 2 cut(s) 284, 475
FaiI YATR 5 cut(s) 426, 533, 629, 815, 895
FaqI GGGAC 2 cut(s) 194, 313
FbaI TGATCA 2 cut(s) 760, 862
FblI GTMKAC 1 cut(s) 732
Fnu4HI GCNGC 1 cut(s) 240
FokI GGATG 2 cut(s) 129, 889
FriOI GRGCYC 2 cut(s) 393, 788
Fsp4HI GCNGC 1 cut(s) 240
GluI GCNGC 1 cut(s) 240
GsuI CTGGAG 1 cut(s) 72
HaeIII GGCC 1 cut(s) 93
HapII CCGG 2 cut(s) 133, 660
HindIII AAGCTT 3 cut(s) 80, 101, 407
HinfI GANTC 5 cut(s) 160, 204, 336, 496, 842
HpaII CCGG 2 cut(s) 133, 660
HphI GGTGA 3 cut(s) 362, 505, 847
Hpy166II GTNNAC 3 cut(s) 610, 733, 855
Hpy188III TCNNGA 9 cut(s) 52, 115, 220, 256, 269, 457, 480, 500, 755
Hpy8I GTNNAC 3 cut(s) 610, 733, 855
HpyCH4III ACNGT 4 cut(s) 155, 295, 345, 350
HpyCH4V TGCA 1 cut(s) 610
Ksp22I TGATCA 2 cut(s) 760, 862
Kzo9I GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
LguI GCTCTTC 1 cut(s) 398
Lsp1109I GCAGC 1 cut(s) 251
LweI GCATC 2 cut(s) 357, 603
MalI GATC 9 cut(s) 110, 224, 267, 487, 603, 689, 762, 864, 881
MboI GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
MflI RGATCY 1 cut(s) 687
MhlI GDGCHC 3 cut(s) 393, 612, 788
MluCI AATT 2 cut(s) 137, 634
MlyI GAGTC 1 cut(s) 836
MmeI TCCRAC 2 cut(s) 137, 505
MnlI CCTC 8 cut(s) 23, 32, 38, 96, 238, 427, 693, 829
MseI TTAA 3 cut(s) 44, 324, 665
MslI CAYNNNNRTG 2 cut(s) 73, 800
MspI CCGG 2 cut(s) 133, 660
MspR9I CCNGG 5 cut(s) 90, 134, 148, 660, 774
MvaI CCWGG 3 cut(s) 90, 148, 774
NciI CCSGG 2 cut(s) 134, 660
NdeII GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
NlaIV GGNNCC 1 cut(s) 301
PciSI GCTCTTC 1 cut(s) 398
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 4 cut(s) 160, 204, 336, 496
Pfl23II CGTACG 1 cut(s) 345
PfoI TCCNGGA 1 cut(s) 658
PkrI GCNGC 1 cut(s) 241
PleI GAGTC 1 cut(s) 836
PpsI GAGTC 1 cut(s) 836
PshBI ATTAAT 1 cut(s) 665
Psp124BI GAGCTC 2 cut(s) 393, 788
Psp6I CCWGG 3 cut(s) 88, 146, 772
PspGI CCWGG 3 cut(s) 88, 146, 772
PspLI CGTACG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 301
PspPI GGNCC 3 cut(s) 92, 179, 300
PsuI RGATCY 1 cut(s) 687
RsaI GTAC 2 cut(s) 176, 347
RsaNI GTAC 2 cut(s) 175, 346
RseI CAYNNNNRTG 2 cut(s) 73, 800
SacI GAGCTC 2 cut(s) 393, 788
SapI GCTCTTC 1 cut(s) 398
SaqAI TTAA 3 cut(s) 44, 324, 665
SatI GCNGC 1 cut(s) 240
Sau3AI GATC 9 cut(s) 108, 222, 265, 485, 601, 687, 760, 862, 879
Sau96I GGNCC 3 cut(s) 92, 179, 300
SchI GAGTC 1 cut(s) 836
ScrFI CCNGG 5 cut(s) 90, 134, 148, 660, 774
SduI GDGCHC 3 cut(s) 393, 612, 788
SetI ASST 9 cut(s) 84, 105, 378, 393, 401, 411, 425, 478, 788
SfaNI GCATC 2 cut(s) 357, 603
SinI GGWCC 2 cut(s) 179, 300
SmiMI CAYNNNNRTG 2 cut(s) 73, 800
SmlI CTYRAG 4 cut(s) 254, 269, 500, 767
SmoI CTYRAG 4 cut(s) 254, 269, 500, 767
Sse9I AATT 2 cut(s) 137, 634
SsiI CCGC 1 cut(s) 370
SspI AATATT 1 cut(s) 751
SstI GAGCTC 2 cut(s) 393, 788
StyD4I CCNGG 5 cut(s) 88, 132, 146, 658, 772
TaaI ACNGT 4 cut(s) 155, 295, 345, 350
TaqI TCGA 7 cut(s) 71, 387, 401, 479, 597, 681, 798
TasI AATT 2 cut(s) 137, 634
TfiI GAWTC 4 cut(s) 160, 204, 336, 496
Tru1I TTAA 3 cut(s) 44, 324, 665
Tru9I TTAA 3 cut(s) 44, 324, 665
TscAI CASTG 2 cut(s) 700, 865
TseI GCWGC 1 cut(s) 239
TspDTI ATGAA 2 cut(s) 600, 833
TspGWI ACGGA 3 cut(s) 192, 216, 554
TspRI CASTG 2 cut(s) 700, 865
VneI GTGCAC 1 cut(s) 608
VpaK11BI GGWCC 2 cut(s) 179, 300
VspI ATTAAT 1 cut(s) 665
XapI RAATTY 1 cut(s) 634
XmiI GTMKAC 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.