RchiOBHm_Chr4g0432701

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000354
Physical Location & Seq
Reverse (-)
56812330 .. 56812530
201 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ40127

Sequence Viewer

Length: 201 bp
ATGTGTCCGGGGATCTACATGGGGACAACTACAGTGGAGCTCGGACTTGCAAACATGCTGTACTGTTTTGATTGGAAATTGTCGGAGGGAATGAAGGAGGAAGATATTAACATGGAAGAAACAACTGGGTCATTTTCCATTACTGTCTCTAAGAATACTTCTCTTGACCTTGTCCCCCTAAAAGTTTTTTTTTTTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

66

Amino Acids

7.44

Weight (kDa)

4.25

Isoelectric Point (pI)

30.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 20
AfaI GTAC 1 cut(s) 62
AluBI AGCT 1 cut(s) 40
AluI AGCT 1 cut(s) 40
Alw21I GWGCWC 1 cut(s) 42
Alw26I GTCTC 1 cut(s) 151
AlwI GGATC 1 cut(s) 20
AsuC2I CCSGG 1 cut(s) 9
BanII GRGCYC 1 cut(s) 42
Bbv12I GWGCWC 1 cut(s) 42
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 1 cut(s) 151
BfmI CTRYAG 1 cut(s) 30
Bme1390I CCNGG 1 cut(s) 9
BmrFI CCNGG 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 135
BmuI ACTGGG 1 cut(s) 135
BpuMI CCSGG 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 8
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 1 cut(s) 8
BseNI ACTGG 1 cut(s) 130
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 37, 158
BsmAI GTCTC 1 cut(s) 151
BsmFI GGGAC 2 cut(s) 37, 158
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 12
BspPI GGATC 1 cut(s) 20
BsrI ACTGG 1 cut(s) 130
BssECI CCNNGG 1 cut(s) 8
BssMI GATC 1 cut(s) 12
Bst4CI ACNGT 3 cut(s) 34, 65, 145
BstDEI CTNAG 1 cut(s) 150
BstKTI GATC 1 cut(s) 15
BstMAI GTCTC 1 cut(s) 151
BstMBI GATC 1 cut(s) 12
BstNSI RCATGY 1 cut(s) 58
BstSCI CCNGG 1 cut(s) 7
BstSFI CTRYAG 1 cut(s) 30
BstX2I RGATCY 1 cut(s) 12
BstYI RGATCY 1 cut(s) 12
BtsIMutI CAGTG 1 cut(s) 39
Csp6I GTAC 1 cut(s) 61
CspCI CAANNNNNGTGG 2 cut(s) 15, 50
CviAII CATG 3 cut(s) 19, 55, 112
CviJI RGCY 1 cut(s) 40
CviKI_1 RGCY 1 cut(s) 40
CviQI GTAC 1 cut(s) 61
DdeI CTNAG 1 cut(s) 150
DpnI GATC 1 cut(s) 14
DpnII GATC 1 cut(s) 12
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco53kI GAGCTC 1 cut(s) 40
EcoICRI GAGCTC 1 cut(s) 40
EcoT38I GRGCYC 1 cut(s) 42
FaeI CATG 3 cut(s) 22, 58, 115
FaiI YATR 3 cut(s) 20, 56, 113
FaqI GGGAC 2 cut(s) 37, 158
FatI CATG 3 cut(s) 18, 54, 111
FriOI GRGCYC 1 cut(s) 42
HapII CCGG 1 cut(s) 8
Hin1II CATG 3 cut(s) 22, 58, 115
HpaII CCGG 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 44, 85
Hpy188III TCNNGA 1 cut(s) 164
HpyAV CCTTC 1 cut(s) 88
HpyCH4III ACNGT 3 cut(s) 34, 65, 145
HpyCH4V TGCA 1 cut(s) 50
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 3 cut(s) 22, 58, 115
Kzo9I GATC 1 cut(s) 12
LmnI GCTCC 1 cut(s) 37
LpnPI CCDG 2 cut(s) 21, 111
MalI GATC 1 cut(s) 14
MboI GATC 1 cut(s) 12
MboII GAAGA 2 cut(s) 113, 128
MflI RGATCY 1 cut(s) 12
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 1 cut(s) 77
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 2 cut(s) 79, 91
MseI TTAA 1 cut(s) 108
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 1 cut(s) 9
NciI CCSGG 1 cut(s) 9
NdeII GATC 1 cut(s) 12
NlaIII CATG 3 cut(s) 22, 58, 115
NspI RCATGY 1 cut(s) 58
PflFI GACNNNGTC 1 cut(s) 170
Psp124BI GAGCTC 1 cut(s) 42
PsuI RGATCY 1 cut(s) 12
PsyI GACNNNGTC 1 cut(s) 170
RsaI GTAC 1 cut(s) 62
RsaNI GTAC 1 cut(s) 61
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 108
Sau3AI GATC 1 cut(s) 12
ScrFI CCNGG 1 cut(s) 9
SduI GDGCHC 1 cut(s) 42
SetI ASST 2 cut(s) 42, 171
SfcI CTRYAG 1 cut(s) 30
Sse9I AATT 1 cut(s) 77
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 1 cut(s) 7
TaaI ACNGT 3 cut(s) 34, 65, 145
TasI AATT 1 cut(s) 77
TatI WGTACW 1 cut(s) 60
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TscAI CASTG 1 cut(s) 39
TspDTI ATGAA 1 cut(s) 107
TspRI CASTG 1 cut(s) 39
Tth111I GACNNNGTC 1 cut(s) 170
XceI RCATGY 1 cut(s) 58
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.