Rroxscaffold_5G00374160

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000354
Physical Location & Seq
Reverse (-)
55218977 .. 55220381
1405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00374160.1

Sequence Viewer

Length: 810 bp
ATGACTAACTCAATCTCCCAGAAATCCACTACAACTGTGGATCTTACTGAGCAGTTGTTTGCTCTCATGGGAAGCATAACTTTCAGGATTGATTGTCTGCATGCATCTGATTACTTGCCTTCTTATATTGAGTGTATTACAGACAGAATCTCGGGTCGGATTAGAAATTTCGAAAGAGTTTCCAGGGAAGTTGATCGCTTTTTTCAGCAGGTGATTGATGATCATCTCAAGCCTGGGAGGACGTCACAACGAGAGCATGACGACATAGTTGATGTGCTGCTTAAAATAGTGAGGGAGCAAACTGCGTATGGAGCTGCTCAGCTTGGTCATAATAACATCAAAGCTGTCCTCCTGGATTTGTTTCTGGCTGGAATAGATACTAGTGCAATTACCATGGTGTGGGCGATGACAGAGCTTGCTAGGAAGCCGAGAGTGATGAACAAAGCACAGGAAGAAGTTAGAAACTTGGTTGGAAAGAAAGGAAAAGTCACCGAGAAACCTAAAGCACTAATCCTTATTAATGATTGGGCACTCTCGCGGGATTCAGGATTTTGGAGAGACCCAGAAGAGTTCATCCCAGAAAGGTTTGATGATAGCTCCGCAGATTTTAAAGGGCAGCACTTTGAGTTCTTGCCATTTGGAGCAGGTCGGAGAATGTGTCCGGGGATCTACATGGGGACAACTACAGTGGAGCTCGGACTTGCAAACATGCTGTACTGTCTTGATTGGAAATTGTCGGAGGGAATGAAGGAGGAAGATATTAACATGGAAGAAACAACTGGGTCATTTTCCATGCATTACTGTCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

269

Amino Acids

30.69

Weight (kDa)

5.35

Isoelectric Point (pI)

34.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 55 - 165 6e-18 Cytochrome P450
p450 PF00067 169 - 258 1.5e-22 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 199
AatII GACGTC 1 cut(s) 245
Acc36I ACCTGC 2 cut(s) 199, 635
AccB7I CCANNNNNTGG 1 cut(s) 399
AccII CGCG 1 cut(s) 538
AciI CCGC 2 cut(s) 538, 600
AclWI GGATC 2 cut(s) 48, 674
AcsI RAATTY 1 cut(s) 166
AcyI GRCGYC 1 cut(s) 242
AfaI GTAC 1 cut(s) 716
AfiI CCNNNNNNNGG 1 cut(s) 399
AhlI ACTAGT 1 cut(s) 380
AjnI CCWGG 3 cut(s) 182, 232, 351
AluBI AGCT 6 cut(s) 314, 322, 344, 415, 597, 694
AluI AGCT 6 cut(s) 314, 322, 344, 415, 597, 694
Alw21I GWGCWC 1 cut(s) 696
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 2 cut(s) 48, 674
Ama87I CYCGRG 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 277, 314, 616
ApoI RAATTY 1 cut(s) 166
AseI ATTAAT 1 cut(s) 519
AsuC2I CCSGG 1 cut(s) 663
AsuHPI GGTGA 2 cut(s) 223, 481
AsuII TTCGAA 1 cut(s) 171
AvaI CYCGRG 1 cut(s) 151
BaeGI GKGCMC 1 cut(s) 532
BanII GRGCYC 1 cut(s) 696
Bbv12I GWGCWC 1 cut(s) 696
BbvI GCAGC 3 cut(s) 264, 301, 628
BciT130I CCWGG 3 cut(s) 184, 234, 353
BclI TGATCA 1 cut(s) 220
BcnI CCSGG 1 cut(s) 663
BcoDI GTCTC 1 cut(s) 552
BcuI ACTAGT 1 cut(s) 380
BfaI CTAG 2 cut(s) 381, 420
BfmI CTRYAG 1 cut(s) 684
BfuAI ACCTGC 2 cut(s) 199, 635
BisI GCNGC 3 cut(s) 278, 315, 617
BlpI GCTNAGC 1 cut(s) 318
BlsI GCNGC 3 cut(s) 279, 316, 618
Bme1390I CCNGG 4 cut(s) 184, 234, 353, 663
BmeT110I CYCGRG 1 cut(s) 151
BmrFI CCNGG 4 cut(s) 184, 234, 353, 663
BmrI ACTGGG 1 cut(s) 789
BmsI GCATC 1 cut(s) 113
BmuI ACTGGG 1 cut(s) 789
Bpu1102I GCTNAGC 1 cut(s) 318
Bpu14I TTCGAA 1 cut(s) 171
BpuEI CTTGAG 1 cut(s) 212
BpuMI CCSGG 1 cut(s) 663
BsaBI GATNNNNATC 1 cut(s) 222
BsaHI GRCGYC 1 cut(s) 242
BsaI GGTCTC 1 cut(s) 552
BsaJI CCNNGG 4 cut(s) 183, 233, 393, 662
BsaXI ACNNNNNCTCC 3 cut(s) 29, 643, 673
Bsc4I CCNNNNNNNGG 1 cut(s) 399
Bse1I ACTGG 1 cut(s) 784
Bse8I GATNNNNATC 1 cut(s) 222
BseBI CCWGG 3 cut(s) 184, 234, 353
BseDI CCNNGG 4 cut(s) 183, 233, 393, 662
BseGI GGATG 1 cut(s) 573
BseJI GATNNNNATC 1 cut(s) 222
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMII CTCAG 2 cut(s) 39, 332
BseNI ACTGG 1 cut(s) 784
BseSI GKGCMC 1 cut(s) 532
BseXI GCAGC 3 cut(s) 264, 301, 628
Bsh1236I CGCG 1 cut(s) 538
BsiHKAI GWGCWC 1 cut(s) 696
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 662
BslFI GGGAC 1 cut(s) 691
BslI CCNNNNNNNGG 1 cut(s) 399
BsmAI GTCTC 1 cut(s) 552
BsmFI GGGAC 1 cut(s) 691
Bso31I GGTCTC 1 cut(s) 552
BsoBI CYCGRG 1 cut(s) 151
Bsp119I TTCGAA 1 cut(s) 171
Bsp1286I GDGCHC 2 cut(s) 532, 696
Bsp143I GATC 4 cut(s) 40, 193, 220, 666
Bsp1720I GCTNAGC 1 cut(s) 318
Bsp19I CCATGG 1 cut(s) 393
BspACI CCGC 2 cut(s) 538, 600
BspCNI CTCAG 2 cut(s) 40, 331
BspFNI CGCG 1 cut(s) 538
BspMI ACCTGC 2 cut(s) 199, 635
BspPI GGATC 2 cut(s) 48, 674
BspT104I TTCGAA 1 cut(s) 171
BspTNI GGTCTC 1 cut(s) 552
BsrI ACTGG 1 cut(s) 784
BssECI CCNNGG 4 cut(s) 183, 233, 393, 662
BssMI GATC 4 cut(s) 40, 193, 220, 666
BssNI GRCGYC 1 cut(s) 242
BssT1I CCWWGG 1 cut(s) 393
Bst2UI CCWGG 3 cut(s) 184, 234, 353
Bst4CI ACNGT 4 cut(s) 37, 688, 719, 803
Bst6I CTCTTC 1 cut(s) 561
BstACI GRCGYC 1 cut(s) 242
BstBI TTCGAA 1 cut(s) 171
BstC8I GCNNGC 2 cut(s) 102, 417
BstDEI CTNAG 2 cut(s) 48, 318
BstDSI CCRYGG 1 cut(s) 393
BstF5I GGATG 1 cut(s) 573
BstFNI CGCG 1 cut(s) 538
BstKTI GATC 4 cut(s) 43, 196, 223, 669
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 4 cut(s) 40, 193, 220, 666
BstMWI GCNNNNNNNGC 1 cut(s) 311
BstNI CCWGG 3 cut(s) 184, 234, 353
BstNSI RCATGY 2 cut(s) 104, 712
BstSCI CCNGG 4 cut(s) 182, 232, 351, 661
BstSFI CTRYAG 1 cut(s) 684
BstSLI GKGCMC 1 cut(s) 532
BstUI CGCG 1 cut(s) 538
BstV1I GCAGC 3 cut(s) 264, 301, 628
BstX2I RGATCY 2 cut(s) 40, 666
BstYI RGATCY 2 cut(s) 40, 666
BtgI CCRYGG 1 cut(s) 393
BtgZI GCGATG 1 cut(s) 419
BtsCI GGATG 1 cut(s) 573
BtsIMutI CAGTG 1 cut(s) 693
BveI ACCTGC 2 cut(s) 199, 635
Cac8I GCNNGC 2 cut(s) 102, 417
Csp6I GTAC 1 cut(s) 715
CspCI CAANNNNNGTGG 2 cut(s) 669, 704
CviAII CATG 8 cut(s) 67, 101, 257, 394, 673, 709, 766, 793
CviJI RGCY 9 cut(s) 232, 314, 322, 344, 368, 415, 427, 597, 694
CviKI_1 RGCY 9 cut(s) 232, 314, 322, 344, 368, 415, 427, 597, 694
CviQI GTAC 1 cut(s) 715
DdeI CTNAG 2 cut(s) 48, 318
DpnI GATC 4 cut(s) 42, 195, 222, 668
DpnII GATC 4 cut(s) 40, 193, 220, 666
DraI TTTAAA 1 cut(s) 610
Eam1104I CTCTTC 1 cut(s) 561
EarI CTCTTC 1 cut(s) 561
Ecl136II GAGCTC 1 cut(s) 694
Eco130I CCWWGG 1 cut(s) 393
Eco24I GRGCYC 1 cut(s) 696
Eco31I GGTCTC 1 cut(s) 552
Eco53kI GAGCTC 1 cut(s) 694
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 694
EcoRII CCWGG 3 cut(s) 182, 232, 351
EcoT14I CCWWGG 1 cut(s) 393
EcoT22I ATGCAT 2 cut(s) 106, 798
EcoT38I GRGCYC 1 cut(s) 696
ErhI CCWWGG 1 cut(s) 393
FaeI CATG 8 cut(s) 70, 104, 260, 397, 676, 712, 769, 796
FalI AAGNNNNNCTT 2 cut(s) 64, 96
FaqI GGGAC 1 cut(s) 691
FatI CATG 8 cut(s) 66, 100, 256, 393, 672, 708, 765, 792
FauI CCCGC 1 cut(s) 531
FbaI TGATCA 1 cut(s) 220
Fnu4HI GCNGC 3 cut(s) 278, 315, 617
FokI GGATG 1 cut(s) 560
FriOI GRGCYC 1 cut(s) 696
Fsp4HI GCNGC 3 cut(s) 278, 315, 617
FspBI CTAG 2 cut(s) 381, 420
GluI GCNGC 3 cut(s) 278, 315, 617
HapII CCGG 1 cut(s) 662
Hin1I GRCGYC 1 cut(s) 242
Hin1II CATG 8 cut(s) 70, 104, 260, 397, 676, 712, 769, 796
HinfI GANTC 2 cut(s) 147, 542
HpaII CCGG 1 cut(s) 662
HphI GGTGA 2 cut(s) 223, 481
Hpy188I TCNGA 5 cut(s) 109, 159, 651, 698, 739
Hpy188III TCNNGA 3 cut(s) 85, 546, 722
HpyAV CCTTC 2 cut(s) 129, 742
HpyCH4III ACNGT 4 cut(s) 37, 688, 719, 803
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 5 cut(s) 100, 104, 386, 704, 796
HpyF10VI GCNNNNNNNGC 1 cut(s) 311
HpyF3I CTNAG 2 cut(s) 48, 318
HpySE526I ACGT 1 cut(s) 242
Hsp92I GRCGYC 1 cut(s) 242
Hsp92II CATG 8 cut(s) 70, 104, 260, 397, 676, 712, 769, 796
Ksp22I TGATCA 1 cut(s) 220
Kzo9I GATC 4 cut(s) 40, 193, 220, 666
LmnI GCTCC 5 cut(s) 295, 311, 602, 641, 691
Lsp1109I GCAGC 3 cut(s) 264, 301, 628
LweI GCATC 1 cut(s) 113
MaeI CTAG 2 cut(s) 381, 420
MaeII ACGT 1 cut(s) 242
MaeIII GTNAC 2 cut(s) 243, 487
MalI GATC 4 cut(s) 42, 195, 222, 668
MboI GATC 4 cut(s) 40, 193, 220, 666
MboII GAAGA 4 cut(s) 464, 578, 767, 782
MflI RGATCY 2 cut(s) 40, 666
MhlI GDGCHC 2 cut(s) 532, 696
MluCI AATT 3 cut(s) 166, 387, 731
MmeI TCCRAC 4 cut(s) 137, 451, 629, 717
MnlI CCTC 5 cut(s) 231, 285, 359, 733, 745
Mph1103I ATGCAT 2 cut(s) 106, 798
MseI TTAA 4 cut(s) 282, 519, 609, 762
MspI CCGG 1 cut(s) 662
MspR9I CCNGG 4 cut(s) 184, 234, 353, 663
MvaI CCWGG 3 cut(s) 184, 234, 353
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 1 cut(s) 311
NciI CCSGG 1 cut(s) 663
NcoI CCATGG 1 cut(s) 393
NdeII GATC 4 cut(s) 40, 193, 220, 666
NlaIII CATG 8 cut(s) 70, 104, 260, 397, 676, 712, 769, 796
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 2 cut(s) 243, 487
NsiI ATGCAT 2 cut(s) 106, 798
NspI RCATGY 2 cut(s) 104, 712
NspV TTCGAA 1 cut(s) 171
PaeI GCATGC 1 cut(s) 104
PaqCI CACCTGC 1 cut(s) 199
PfeI GAWTC 2 cut(s) 147, 542
PflMI CCANNNNNTGG 1 cut(s) 399
PfoI TCCNGGA 1 cut(s) 351
PkrI GCNGC 3 cut(s) 279, 316, 618
PshBI ATTAAT 1 cut(s) 519
Psp124BI GAGCTC 1 cut(s) 696
Psp6I CCWGG 3 cut(s) 182, 232, 351
PspGI CCWGG 3 cut(s) 182, 232, 351
PsuI RGATCY 2 cut(s) 40, 666
RsaI GTAC 1 cut(s) 716
RsaNI GTAC 1 cut(s) 715
SacI GAGCTC 1 cut(s) 696
SaqAI TTAA 4 cut(s) 282, 519, 609, 762
SatI GCNGC 3 cut(s) 278, 315, 617
Sau3AI GATC 4 cut(s) 40, 193, 220, 666
ScrFI CCNGG 4 cut(s) 184, 234, 353, 663
SduI GDGCHC 2 cut(s) 532, 696
SfaNI GCATC 1 cut(s) 113
SfcI CTRYAG 1 cut(s) 684
SfuI TTCGAA 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 380
SphI GCATGC 1 cut(s) 104
Sse9I AATT 3 cut(s) 166, 387, 731
SsiI CCGC 2 cut(s) 538, 600
SspMI CTAG 2 cut(s) 381, 420
SstI GAGCTC 1 cut(s) 696
StyD4I CCNGG 4 cut(s) 182, 232, 351, 661
StyI CCWWGG 1 cut(s) 393
TaaI ACNGT 4 cut(s) 37, 688, 719, 803
TaiI ACGT 1 cut(s) 245
TaqI TCGA 1 cut(s) 171
TasI AATT 3 cut(s) 166, 387, 731
TatI WGTACW 1 cut(s) 714
TfiI GAWTC 2 cut(s) 147, 542
Tru1I TTAA 4 cut(s) 282, 519, 609, 762
Tru9I TTAA 4 cut(s) 282, 519, 609, 762
TscAI CASTG 1 cut(s) 693
TseFI GTSAC 2 cut(s) 243, 487
TseI GCWGC 3 cut(s) 277, 314, 616
Tsp45I GTSAC 2 cut(s) 243, 487
TspDTI ATGAA 3 cut(s) 452, 562, 761
TspRI CASTG 1 cut(s) 693
Van91I CCANNNNNTGG 1 cut(s) 399
VspI ATTAAT 1 cut(s) 519
XapI RAATTY 1 cut(s) 166
XceI RCATGY 2 cut(s) 104, 712
XcmI CCANNNNNNNNNTGG 1 cut(s) 34
XspI CTAG 2 cut(s) 381, 420
ZraI GACGTC 1 cut(s) 243
Zsp2I ATGCAT 2 cut(s) 106, 798
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.