Rh4CG233200

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0000354
Physical Location & Seq
Reverse (-)
47339274 .. 47348148
8875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG233200.1

Sequence Viewer

Length: 456 bp
ATGATTGATTCAATCTCTGACGCATCAGCTTCATCTTCTCCTGTTAACCTTACTGAGAAGTTGTTTGCTCTCATGAGCAGTATAATTTTCAGGATTGTTTTCGGGACAAGTTTCCAAGGGAGCGATTTGGAGCATGAAAATTTTCTTCGAGTGCTCCTTGATAGTCGAGATATGCTTACAGGCTTCTCATCATGCGCAGCTGATTTCTTTCCTCCCTGTGTCGGGTGGATCATAGACAGGATCTCCGGTAAACATAGAGAGTTTGACAGAGTTTCCAGGGAAGTTCATCGCTTTTTTCAGCAACCGATTGATGATCATCTCAGGCCTGGGAGAACACAACAGGAGCATGAAGATATAGTTGATGTGCTGCTTAAAATGGTCAAGAAGCAAACTGAGATTGGAGCTGCTCAGCTTGGTCATAATAACATCAAGGCAGTTCTCTTGCCTAATAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

151

Amino Acids

17.07

Weight (kDa)

6.04

Isoelectric Point (pI)

46.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 2 - 147 1.8e-09 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 196
AclWI GGATC 2 cut(s) 236, 248
AcsI RAATTY 1 cut(s) 139
AfiI CCNNNNNNNGG 2 cut(s) 221, 222
AgsI TTSAA 1 cut(s) 12
AjnI CCWGG 2 cut(s) 275, 325
AluBI AGCT 4 cut(s) 29, 200, 404, 412
AluI AGCT 4 cut(s) 29, 200, 404, 412
Alw21I GWGCWC 1 cut(s) 156
AlwI GGATC 2 cut(s) 236, 248
AoxI GGCC 1 cut(s) 323
ApeKI GCWGC 3 cut(s) 197, 367, 404
ApoI RAATTY 1 cut(s) 139
Asp700I GAANNNNTTC 1 cut(s) 141
AspLEI GCGC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 209, 354, 391
BciT130I CCWGG 2 cut(s) 277, 327
BclI TGATCA 1 cut(s) 313
BisI GCNGC 3 cut(s) 198, 368, 405
BlpI GCTNAGC 1 cut(s) 408
BlsI GCNGC 3 cut(s) 199, 369, 406
Bme1390I CCNGG 2 cut(s) 277, 327
BmrFI CCNGG 2 cut(s) 277, 327
BmsI GCATC 1 cut(s) 32
Bpu1102I GCTNAGC 1 cut(s) 408
BsaBI GATNNNNATC 1 cut(s) 315
BsaJI CCNNGG 3 cut(s) 115, 276, 326
BsaWI WCCGGW 1 cut(s) 245
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bsc4I CCNNNNNNNGG 2 cut(s) 221, 222
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 277, 327
BseDI CCNNGG 3 cut(s) 115, 276, 326
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 2 cut(s) 221, 222
BseMII CTCAG 4 cut(s) 45, 334, 384, 422
BseXI GCAGC 3 cut(s) 209, 354, 391
BshFI GGCC 1 cut(s) 325
BsiHKAI GWGCWC 1 cut(s) 156
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 1 cut(s) 118
BslI CCNNNNNNNGG 2 cut(s) 221, 222
BsmFI GGGAC 1 cut(s) 118
BsnI GGCC 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 156
Bsp143I GATC 3 cut(s) 228, 240, 313
Bsp1720I GCTNAGC 1 cut(s) 408
BspANI GGCC 1 cut(s) 325
BspCNI CTCAG 4 cut(s) 46, 333, 385, 421
BspHI TCATGA 1 cut(s) 72
BspPI GGATC 2 cut(s) 236, 248
BssECI CCNNGG 3 cut(s) 115, 276, 326
BssMI GATC 3 cut(s) 228, 240, 313
BssT1I CCWWGG 1 cut(s) 115
Bst2UI CCWGG 2 cut(s) 277, 327
BstDEI CTNAG 4 cut(s) 54, 320, 393, 408
BstHHI GCGC 1 cut(s) 197
BstKTI GATC 3 cut(s) 231, 243, 316
BstMBI GATC 3 cut(s) 228, 240, 313
BstNI CCWGG 2 cut(s) 277, 327
BstSCI CCNGG 2 cut(s) 275, 325
BstV1I GCAGC 3 cut(s) 209, 354, 391
BstX2I RGATCY 1 cut(s) 240
BstYI RGATCY 1 cut(s) 240
BsuRI GGCC 1 cut(s) 325
BtgZI GCGATG 1 cut(s) 272
CciI TCATGA 1 cut(s) 72
CfoI GCGC 1 cut(s) 197
CseI GACGC 1 cut(s) 29
CviAII CATG 4 cut(s) 73, 134, 192, 347
CviJI RGCY 6 cut(s) 29, 183, 200, 325, 404, 412
CviKI_1 RGCY 6 cut(s) 29, 183, 200, 325, 404, 412
DdeI CTNAG 4 cut(s) 54, 320, 393, 408
DpnI GATC 3 cut(s) 230, 242, 315
DpnII GATC 3 cut(s) 228, 240, 313
Eco130I CCWWGG 1 cut(s) 115
Eco147I AGGCCT 1 cut(s) 325
EcoRII CCWGG 2 cut(s) 275, 325
EcoT14I CCWWGG 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 115
FaeI CATG 4 cut(s) 76, 137, 195, 350
FaqI GGGAC 1 cut(s) 118
FatI CATG 4 cut(s) 72, 133, 191, 346
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 3 cut(s) 198, 368, 405
Fsp4HI GCNGC 3 cut(s) 198, 368, 405
FspI TGCGCA 1 cut(s) 196
GlaI GCGC 1 cut(s) 196
GluI GCNGC 3 cut(s) 198, 368, 405
HaeIII GGCC 1 cut(s) 325
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 29
HhaI GCGC 1 cut(s) 197
Hin1II CATG 4 cut(s) 76, 137, 195, 350
Hin6I GCGC 1 cut(s) 195
HinP1I GCGC 1 cut(s) 195
HincII GTYRAC 1 cut(s) 46
HindII GTYRAC 1 cut(s) 46
HinfI GANTC 1 cut(s) 8
HpaI GTTAAC 1 cut(s) 46
HpaII CCGG 1 cut(s) 246
Hpy166II GTNNAC 2 cut(s) 46, 251
Hpy188I TCNGA 1 cut(s) 19
Hpy188III TCNNGA 5 cut(s) 73, 91, 103, 167, 382
Hpy8I GTNNAC 2 cut(s) 46, 251
HpyF3I CTNAG 4 cut(s) 54, 320, 393, 408
Hsp92II CATG 4 cut(s) 76, 137, 195, 350
HspAI GCGC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 313
KspAI GTTAAC 1 cut(s) 46
Kzo9I GATC 3 cut(s) 228, 240, 313
LmnI GCTCC 5 cut(s) 120, 130, 159, 343, 401
Lsp1109I GCAGC 3 cut(s) 209, 354, 391
LweI GCATC 1 cut(s) 32
MalI GATC 3 cut(s) 230, 242, 315
MboI GATC 3 cut(s) 228, 240, 313
MboII GAAGA 3 cut(s) 27, 137, 362
MflI RGATCY 1 cut(s) 240
MhlI GDGCHC 1 cut(s) 156
MluCI AATT 2 cut(s) 84, 139
MnlI CCTC 1 cut(s) 222
MroXI GAANNNNTTC 1 cut(s) 141
MseI TTAA 2 cut(s) 45, 372
MspA1I CMGCKG 1 cut(s) 200
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 277, 327
MvaI CCWGG 2 cut(s) 277, 327
NdeII GATC 3 cut(s) 228, 240, 313
NlaIII CATG 4 cut(s) 76, 137, 195, 350
NsbI TGCGCA 1 cut(s) 196
PagI TCATGA 1 cut(s) 72
PceI AGGCCT 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 141
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 199, 369, 406
Psp6I CCWGG 2 cut(s) 275, 325
PspGI CCWGG 2 cut(s) 275, 325
PsuI RGATCY 1 cut(s) 240
PvuII CAGCTG 1 cut(s) 200
SaqAI TTAA 2 cut(s) 45, 372
SatI GCNGC 3 cut(s) 198, 368, 405
Sau3AI GATC 3 cut(s) 228, 240, 313
ScrFI CCNGG 2 cut(s) 277, 327
SduI GDGCHC 1 cut(s) 156
SetI ASST 5 cut(s) 31, 51, 202, 406, 414
SfaNI GCATC 1 cut(s) 32
Sse9I AATT 2 cut(s) 84, 139
SseBI AGGCCT 1 cut(s) 325
StuI AGGCCT 1 cut(s) 325
StyD4I CCNGG 2 cut(s) 275, 325
StyI CCWWGG 1 cut(s) 115
TaqI TCGA 2 cut(s) 148, 166
TasI AATT 2 cut(s) 84, 139
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 2 cut(s) 45, 372
Tru9I TTAA 2 cut(s) 45, 372
TseI GCWGC 3 cut(s) 197, 367, 404
TspDTI ATGAA 4 cut(s) 21, 150, 275, 363
XapI RAATTY 1 cut(s) 139
XmnI GAANNNNTTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.