AT5G25130

cytochrome P450

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Forward (+)
8668232 .. 8670237
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G25130.1

Sequence Viewer

Length: 1491 bp
ATGAGTTTGTGGTATATCATTGTTGCATTCGTCTTCTTTTCATCTATGATCATTGTAAGGATCATTAGAAAGACAAAGAAGAATCTACCACCCGGACCCCCAAGACTTCCTATAATTGGAAACTTGCACCAACTAGGATCAAAACCTCATCGTTCGATGTTCAAATTATCCGAAACATATGGACCTCTAATGTCCCTAAAGTTTGGAAGCGTGTCTACTGTGGTGGCATCTACACCAGAGACAGTGAAGGAAGTCTTAAAAACATTTGACGTAGAATGTTGTTCGCGACCAAATATGACCTATCCCGCAAGAGTTACGTACAATTTAAAAGATCTATGCTTTTCTCCTTATAGCAAATATTGGAGGGAGGTACGAAAGATGACAGTTGTTGAACTCTACACCGCAAAAAGGGTGCAATCATTTCAACATACAAGAAAAGAAGAAGTTGCAGCCCTCGTTGATTTCATCAAACAAGCTGCTTCATTGGAGAAACCAGTTAACTTGAACAAGAAGTTAATGAAACTATCAGGAAGTGTGATTTGTAGAGTTGCATTTGGTATCAATCTTCAAGGAAGTAAACTTGAGAATACTTATGAGGAAGTCATTCAAGGAACTGTGGAGTTGGTGGGGAGTTTTGCAGCAGCAGATTACTTTCCGGTTGTTGGTAGAATCATCGATAGGATCACAGGGTTACATAGCAAATGTGAGAAGCTTTTCAAGGCAATGGATGCATTTTTTGATCAATCTATAAAGCATCACCTAGAAGATGAGATTATTAAAGATGATATAATTGACTTGCTTCTCAAGATGGAAAGGGGAGAGACTACACTTGGGGAGTTTCAACTTACTCGCGACCACACCAAAGGAATTCTTGCCAATATTCTCAACGCTGGAATAGACACTTCTGCACAAGTTATGACATGGGTGATGACATATTTGATTTCAAACCCAAGAGTTTTGAAGAAAGCGCAGGCCGAGGTGAGAGAAGTGATAAAACACAAAGATGATATCATAGAAGAAGATATAGAACGACTCCAATATCTGAAAATGGTAATTAAAGAAACGTTTAGGATAAACCCACTTGTGCCACTTCTAATTCCAAGAGAGGCTTCAAAAGATGTAAAGATCGGAGGTTATAATATTCCAAAGAAAACATGGATCCATGTTAATATATGGGCTATTCATAGGAATCCAAACGTTTGGAAAGATCCAGAAGCTTTCATTCCCGAGAGGTTTATGGATAGCCAGATTGACTATAAAGGGTTGAACTTTGAGTTGTTGCCGTTTGGTAGCGGAAGGAGAATATGCCCTGGTATTGGAATGGGTATGGCCTTGGTTCACTTGACTCTTATCAATCTTCTTTATCGATTCGATTGGAAGCTTCCAGAAGGAATGAAGGTAGCAGATGTTGATCTTGAAGAATCATATGGACTTGTTTGTCCTAAGAAAATCCCACTTCAGCTTATCCCGGTCCTTACCCAATGGACTTGA

Protein Analysis

496

Amino Acids

56.73

Weight (kDa)

9.14

Isoelectric Point (pI)

31.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 483 2.3e-103 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000354)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13080 AT1G13080 AT1G13090 AT1G13090 AT1G13100 AT1G13110 AT2G02580 AT2G24180 AT3G26150 AT3G26160 AT3G26170 AT3G26180 AT3G26180 AT3G26190 AT3G26200 AT3G26210 AT3G26290 AT3G26290 AT3G26300 AT3G26310 AT3G26320 AT3G26330 AT3G26830 AT3G44250 AT3G53280 AT3G53290 AT3G53300 AT3G53305 AT5G25120 AT5G25130 AT5G25140 AT5G25180 AT5G35715 AT5G57260
fragaria_vesca FvH4_4g25390 FvH4_4g25390 FvH4_4g25390
malus_domestica MD13G1103500.v1.1 MD13G1103800.v1.1 MD13G1104100.v1.1 MD16G1103600.v1.1 MD16G1104000.v1.1 MD16G1104200.v1.1 MD16G1104300.v1.1
prunus_persica Prupe.1G170800_v2.0.a1 Prupe.1G242300_v2.0.a1 Prupe.1G242400_v2.0.a1
pyrus_communis pycom13g09040 pycom16g08850 pycom16g08860
rosa_chinensis RchiOBHm_Chr4g0419321 RchiOBHm_Chr4g0419411 RchiOBHm_Chr4g0419461 RchiOBHm_Chr4g0419481 RchiOBHm_Chr4g0419491 RchiOBHm_Chr4g0419571 RchiOBHm_Chr4g0432681 RchiOBHm_Chr4g0432701 RchiOBHm_Chr5g0025811
rosa_laevigata RLG00000003494 RLG00000006819 RLG00000006820 RLG00000006821 RLG00000006823 RLG00000007814 RLG00000007815 RLG00000032878
rosa_multiflora Rmu_co8315439.1_g000001 Rmu_sc0000455.1_g000013 Rmu_sc0000455.1_g000035 Rmu_sc0000455.1_g000058 Rmu_sc0000675.1_g000043 Rmu_sc0001912.1_g000035 Rmu_sc0002401.1_g000014 Rmu_sc0004932.1_g000013 Rmu_sc0008245.1_g000007 Rmu_sc0009481.1_g000005 Rmu_ssc0000467.1_g000029
rosa_roxburghii Rroxscaffold_1G00053390 Rroxscaffold_1G00054350 Rroxscaffold_4G00324380 Rroxscaffold_5G00362300 Rroxscaffold_5G00362360 Rroxscaffold_5G00374140 Rroxscaffold_5G00374160
rosa_rugosa Rorug04G0158300 Rorug04G0261600 Rorug04G0261700 Rorug04G0261800
rosa_samantha Rh4AG220300 Rh4AG316100 Rh4BG221600 Rh4BG222000 Rh4BG222100 Rh4BG222200 Rh4BG324100 Rh4CG233000 Rh4CG233100 Rh4CG233200 Rh4CG233900 Rh4CG339100 Rh4DG319500
rosa_wichuraiana Rw4G018840 Rw4G018880 Rw4G018900 Rw4G018930 Rw4G027500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1137
AasI GACNNNNNNGTC 1 cut(s) 1437
AccI GTMKAC 1 cut(s) 215
AccII CGCG 2 cut(s) 286, 852
AciI CCGC 3 cut(s) 306, 402, 1293
AclI AACGTT 2 cut(s) 1064, 1197
AclWI GGATC 6 cut(s) 68, 145, 689, 1153, 1166, 1202
AcsI RAATTY 1 cut(s) 867
AcuI CTGAAG 1 cut(s) 1442
AfaI GTAC 2 cut(s) 320, 372
AfiI CCNNNNNNNGG 4 cut(s) 116, 408, 662, 1316
AjnI CCWGG 1 cut(s) 1309
AjuI GAANNNNNNNTTGG 2 cut(s) 1093, 1125
AluBI AGCT 5 cut(s) 476, 712, 1217, 1381, 1462
AluI AGCT 5 cut(s) 476, 712, 1217, 1381, 1462
Alw26I GTCTC 2 cut(s) 233, 815
AlwI GGATC 6 cut(s) 68, 145, 689, 1153, 1166, 1202
Ama87I CYCGRG 1 cut(s) 1226
AoxI GGCC 2 cut(s) 972, 1329
ApeKI GCWGC 4 cut(s) 449, 476, 638, 641
ApoI RAATTY 1 cut(s) 867
Asp700I GAANNNNTTC 2 cut(s) 603, 713
AspLEI GCGC 1 cut(s) 970
AspS9I GGNCC 3 cut(s) 95, 182, 1471
AsuC2I CCSGG 2 cut(s) 93, 1469
AsuHPI GGTGA 3 cut(s) 749, 937, 991
AvaI CYCGRG 1 cut(s) 1226
AvaII GGWCC 3 cut(s) 95, 182, 1471
BamHI GGATCC 1 cut(s) 1158
BarI GAAGNNNNNNTAC 2 cut(s) 199, 231
BbsI GAAGAC 1 cut(s) 25
BbvI GCAGC 4 cut(s) 461, 463, 650, 653
BccI CCATC 1 cut(s) 802
BceAI ACGGC 1 cut(s) 1267
BciT130I CCWGG 1 cut(s) 1311
BclI TGATCA 2 cut(s) 48, 739
BcnI CCSGG 2 cut(s) 93, 1469
BcoDI GTCTC 2 cut(s) 233, 815
BfaI CTAG 2 cut(s) 134, 761
BglII AGATCT 1 cut(s) 331
BisI GCNGC 4 cut(s) 450, 477, 639, 642
BlsI GCNGC 4 cut(s) 451, 478, 640, 643
Bme1390I CCNGG 3 cut(s) 93, 1311, 1469
Bme18I GGWCC 3 cut(s) 95, 182, 1471
BmeT110I CYCGRG 1 cut(s) 1226
BmgT120I GGNCC 3 cut(s) 95, 182, 1471
BmiI GGNNCC 2 cut(s) 97, 1160
BmrFI CCNGG 3 cut(s) 93, 1311, 1469
BmsI GCATC 3 cut(s) 236, 718, 763
BpiI GAAGAC 1 cut(s) 25
BpuEI CTTGAG 2 cut(s) 602, 788
BpuMI CCSGG 2 cut(s) 93, 1469
Bsa29I ATCGAT 2 cut(s) 675, 1366
BsaAI YACGTR 1 cut(s) 318
BsaBI GATNNNNATC 1 cut(s) 1410
BsaJI CCNNGG 3 cut(s) 975, 1309, 1332
BsaWI WCCGGW 1 cut(s) 655
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 408, 662, 1316
Bse1I ACTGG 1 cut(s) 494
Bse3DI GCAATG 1 cut(s) 729
Bse8I GATNNNNATC 1 cut(s) 1410
BseBI CCWGG 1 cut(s) 1311
BseCI ATCGAT 2 cut(s) 675, 1366
BseDI CCNNGG 3 cut(s) 975, 1309, 1332
BseGI GGATG 1 cut(s) 733
BseJI GATNNNNATC 1 cut(s) 1410
BseLI CCNNNNNNNGG 4 cut(s) 116, 408, 662, 1316
BseMI GCAATG 1 cut(s) 729
BseNI ACTGG 1 cut(s) 494
BseXI GCAGC 4 cut(s) 461, 463, 650, 653
BsgI GTGCAG 1 cut(s) 891
Bsh1236I CGCG 2 cut(s) 286, 852
BshFI GGCC 2 cut(s) 974, 1331
BshVI ATCGAT 2 cut(s) 675, 1366
BsiHKCI CYCGRG 1 cut(s) 1226
BsiSI CCGG 3 cut(s) 93, 656, 1469
BslFI GGGAC 1 cut(s) 178
BslI CCNNNNNNNGG 4 cut(s) 116, 408, 662, 1316
BsmAI GTCTC 2 cut(s) 233, 815
BsmFI GGGAC 1 cut(s) 178
BsmI GAATGC 1 cut(s) 26
BsnI GGCC 2 cut(s) 974, 1331
BsoBI CYCGRG 1 cut(s) 1226
Bsp68I TCGCGA 2 cut(s) 286, 852
BspACI CCGC 3 cut(s) 306, 402, 1293
BspANI GGCC 2 cut(s) 974, 1331
BspDI ATCGAT 2 cut(s) 675, 1366
BspFNI CGCG 2 cut(s) 286, 852
BspLI GGNNCC 2 cut(s) 97, 1160
BspPI GGATC 6 cut(s) 68, 145, 689, 1153, 1166, 1202
BsrDI GCAATG 1 cut(s) 729
BsrI ACTGG 1 cut(s) 494
BssECI CCNNGG 3 cut(s) 975, 1309, 1332
BssT1I CCWWGG 1 cut(s) 1332
Bst2UI CCWGG 1 cut(s) 1311
Bst4CI ACNGT 4 cut(s) 220, 244, 385, 616
BstAPI GCANNNNNTGC 1 cut(s) 728
BstBAI YACGTR 1 cut(s) 318
BstC8I GCNNGC 1 cut(s) 972
BstDEI CTNAG 1 cut(s) 1443
BstF5I GGATG 1 cut(s) 733
BstFNI CGCG 2 cut(s) 286, 852
BstHHI GCGC 1 cut(s) 970
BstMAI GTCTC 2 cut(s) 233, 815
BstMWI GCNNNNNNNGC 1 cut(s) 728
BstNI CCWGG 1 cut(s) 1311
BstSCI CCNGG 3 cut(s) 91, 1309, 1467
BstSNI TACGTA 1 cut(s) 318
BstUI CGCG 2 cut(s) 286, 852
BstV1I GCAGC 4 cut(s) 461, 463, 650, 653
BstV2I GAAGAC 1 cut(s) 25
BstX2I RGATCY 3 cut(s) 331, 1158, 1207
BstXI CCANNNNNNTGG 1 cut(s) 1200
BstYI RGATCY 3 cut(s) 331, 1158, 1207
Bsu15I ATCGAT 2 cut(s) 675, 1366
BsuRI GGCC 2 cut(s) 974, 1331
BsuTUI ATCGAT 2 cut(s) 675, 1366
BtsCI GGATG 1 cut(s) 733
BtsIMutI CAGTG 1 cut(s) 249
BtuMI TCGCGA 2 cut(s) 286, 852
Cac8I GCNNGC 1 cut(s) 972
CfoI GCGC 1 cut(s) 970
Cfr13I GGNCC 3 cut(s) 95, 182, 1471
ClaI ATCGAT 2 cut(s) 675, 1366
Csp6I GTAC 2 cut(s) 319, 371
CviAII CATG 3 cut(s) 921, 1155, 1163
CviQI GTAC 2 cut(s) 319, 371
DdeI CTNAG 1 cut(s) 1443
DraI TTTAAA 1 cut(s) 327
DrdI GACNNNNNNGTC 1 cut(s) 1437
DseDI GACNNNNNNGTC 1 cut(s) 1437
Eco105I TACGTA 1 cut(s) 318
Eco130I CCWWGG 1 cut(s) 1332
Eco32I GATATC 1 cut(s) 1009
Eco47I GGWCC 3 cut(s) 95, 182, 1471
Eco57I CTGAAG 1 cut(s) 1442
Eco88I CYCGRG 1 cut(s) 1226
EcoRI GAATTC 1 cut(s) 867
EcoRII CCWGG 1 cut(s) 1309
EcoRV GATATC 1 cut(s) 1009
EcoT14I CCWWGG 1 cut(s) 1332
EcoT22I ATGCAT 1 cut(s) 733
ErhI CCWWGG 1 cut(s) 1332
FaeI CATG 3 cut(s) 924, 1158, 1166
FalI AAGNNNNNCTT 6 cut(s) 239, 271, 855, 887, 1093, 1125
FaqI GGGAC 1 cut(s) 178
FatI CATG 3 cut(s) 920, 1154, 1162
FauI CCCGC 1 cut(s) 313
FauNDI CATATG 2 cut(s) 178, 1426
FbaI TGATCA 2 cut(s) 48, 739
FblI GTMKAC 1 cut(s) 215
Fnu4HI GCNGC 4 cut(s) 450, 477, 639, 642
FokI GGATG 1 cut(s) 740
Fsp4HI GCNGC 4 cut(s) 450, 477, 639, 642
FspBI CTAG 2 cut(s) 134, 761
GlaI GCGC 1 cut(s) 969
GluI GCNGC 4 cut(s) 450, 477, 639, 642
HaeIII GGCC 2 cut(s) 974, 1331
HapII CCGG 3 cut(s) 93, 656, 1469
HhaI GCGC 1 cut(s) 970
Hin1II CATG 3 cut(s) 924, 1158, 1166
Hin6I GCGC 1 cut(s) 968
HinP1I GCGC 1 cut(s) 968
HincII GTYRAC 1 cut(s) 499
HindII GTYRAC 1 cut(s) 499
HindIII AAGCTT 3 cut(s) 710, 1215, 1379
HinfI GANTC 7 cut(s) 82, 669, 1032, 1189, 1345, 1368, 1421
HpaI GTTAAC 1 cut(s) 499
HpaII CCGG 3 cut(s) 93, 656, 1469
HphI GGTGA 3 cut(s) 749, 937, 991
Hpy166II GTNNAC 4 cut(s) 216, 499, 578, 1339
Hpy188I TCNGA 3 cut(s) 172, 1044, 1130
Hpy188III TCNNGA 8 cut(s) 285, 528, 805, 851, 1211, 1226, 1385, 1415
Hpy8I GTNNAC 4 cut(s) 216, 499, 578, 1339
HpyAV CCTTC 4 cut(s) 241, 1290, 1382, 1390
HpyCH4III ACNGT 4 cut(s) 220, 244, 385, 616
HpyCH4IV ACGT 4 cut(s) 270, 317, 1064, 1197
HpyCH4V TGCA 8 cut(s) 26, 127, 415, 449, 551, 638, 731, 908
HpyF10VI GCNNNNNNNGC 1 cut(s) 728
HpyF3I CTNAG 1 cut(s) 1443
HpySE526I ACGT 4 cut(s) 270, 317, 1064, 1197
Hsp92II CATG 3 cut(s) 924, 1158, 1166
HspAI GCGC 1 cut(s) 968
Ksp22I TGATCA 2 cut(s) 48, 739
KspAI GTTAAC 1 cut(s) 499
Lsp1109I GCAGC 4 cut(s) 461, 463, 650, 653
LweI GCATC 3 cut(s) 236, 718, 763
MaeI CTAG 2 cut(s) 134, 761
MaeII ACGT 4 cut(s) 270, 317, 1064, 1197
MaeIII GTNAC 2 cut(s) 313, 690
MflI RGATCY 3 cut(s) 331, 1158, 1207
MluCI AATT 7 cut(s) 114, 164, 322, 789, 867, 1053, 1095
MlyI GAGTC 2 cut(s) 1026, 1339
Mph1103I ATGCAT 1 cut(s) 733
MroXI GAANNNNTTC 2 cut(s) 603, 713
MseI TTAA 7 cut(s) 257, 326, 498, 515, 777, 1056, 1167
MslI CAYNNNNRTG 1 cut(s) 1002
MspI CCGG 3 cut(s) 93, 656, 1469
MspR9I CCNGG 3 cut(s) 93, 1311, 1469
Mva1269I GAATGC 1 cut(s) 26
MvaI CCWGG 1 cut(s) 1311
MvnI CGCG 2 cut(s) 286, 852
MwoI GCNNNNNNNGC 1 cut(s) 728
NciI CCSGG 2 cut(s) 93, 1469
NdeI CATATG 2 cut(s) 178, 1426
NlaIII CATG 3 cut(s) 924, 1158, 1166
NlaIV GGNNCC 2 cut(s) 97, 1160
NmeAIII GCCGAG 1 cut(s) 1000
NruI TCGCGA 2 cut(s) 286, 852
NsiI ATGCAT 1 cut(s) 733
PctI GAATGC 1 cut(s) 26
PdmI GAANNNNTTC 2 cut(s) 603, 713
PfeI GAWTC 5 cut(s) 82, 669, 1189, 1368, 1421
PkrI GCNGC 4 cut(s) 451, 478, 640, 643
PleI GAGTC 2 cut(s) 1026, 1339
PpsI GAGTC 2 cut(s) 1026, 1339
Ppu21I YACGTR 1 cut(s) 318
PsiI TTATAA 1 cut(s) 1137
Psp1406I AACGTT 2 cut(s) 1064, 1197
Psp6I CCWGG 1 cut(s) 1309
PspGI CCWGG 1 cut(s) 1309
PspN4I GGNNCC 2 cut(s) 97, 1160
PspPI GGNCC 3 cut(s) 95, 182, 1471
PsuI RGATCY 3 cut(s) 331, 1158, 1207
RruI TCGCGA 2 cut(s) 286, 852
RsaI GTAC 2 cut(s) 320, 372
RsaNI GTAC 2 cut(s) 319, 371
RseI CAYNNNNRTG 1 cut(s) 1002
SaqAI TTAA 7 cut(s) 257, 326, 498, 515, 777, 1056, 1167
SatI GCNGC 4 cut(s) 450, 477, 639, 642
Sau96I GGNCC 3 cut(s) 95, 182, 1471
SchI GAGTC 2 cut(s) 1026, 1339
ScrFI CCNGG 3 cut(s) 93, 1311, 1469
SfaNI GCATC 3 cut(s) 236, 718, 763
SinI GGWCC 3 cut(s) 95, 182, 1471
SmiMI CAYNNNNRTG 1 cut(s) 1002
SmlI CTYRAG 2 cut(s) 581, 803
SmoI CTYRAG 2 cut(s) 581, 803
SnaBI TACGTA 1 cut(s) 318
Sse9I AATT 7 cut(s) 114, 164, 322, 789, 867, 1053, 1095
SsiI CCGC 3 cut(s) 306, 402, 1293
SspI AATATT 3 cut(s) 359, 880, 1141
SspMI CTAG 2 cut(s) 134, 761
StyD4I CCNGG 3 cut(s) 91, 1309, 1467
StyI CCWWGG 1 cut(s) 1332
TaaI ACNGT 4 cut(s) 220, 244, 385, 616
TaiI ACGT 4 cut(s) 273, 320, 1067, 1200
TaqI TCGA 4 cut(s) 155, 675, 1366, 1371
TasI AATT 7 cut(s) 114, 164, 322, 789, 867, 1053, 1095
TfiI GAWTC 5 cut(s) 82, 669, 1189, 1368, 1421
Tru1I TTAA 7 cut(s) 257, 326, 498, 515, 777, 1056, 1167
Tru9I TTAA 7 cut(s) 257, 326, 498, 515, 777, 1056, 1167
TscAI CASTG 1 cut(s) 249
TseI GCWGC 4 cut(s) 449, 476, 638, 641
TspDTI ATGAA 7 cut(s) 30, 454, 471, 533, 1172, 1210, 1409
TspRI CASTG 1 cut(s) 249
VpaK11BI GGWCC 3 cut(s) 95, 182, 1471
XapI RAATTY 1 cut(s) 867
XcmI CCANNNNNNNNNTGG 1 cut(s) 1152
XmiI GTMKAC 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 603, 713
XspI CTAG 2 cut(s) 134, 761
Zsp2I ATGCAT 1 cut(s) 733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.